Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01004 ATGGGTTCCGATGATGTCTCCACCGGCCTTGTTCTTGGTCTGAGCCACCACCCCAAAGCAGAGAAATCTCTCAAATCATGTCATCTGAAAGGGAAGAATCCATCTTCAAATTTTGGAAGTGCCTTTCTCAGTCTAGGTCTCTCAGACGAGACCAACCCAATGGCTACCAACTCCCGCGTCAATACGCAACTTCCCTACGAACCAAATGATGCACTCCGGCGGCAGGCCTCTGCTTCAAACTCATCCAGTTTCAAGCGCGATAGAGACTTCTGCGACGGCGATGAGATGGAAGCAGAGGCTGAGGTGGAGTTAGAGCGCATCTCCTCTAGGCTCAGCGAGGAAGAAGAAGACGGCGTTGGCAGCCCGAGGAAAAAACTGAGACTCACAAAAGATCAATCTGCCATTTTAGAGTGCAGCTTCAAAGAGCATGCCACTCTAAACCCCAAACAAAAACAAGAGTTGGCAAGAAGGTTGAGTTTAAGCACAAGACAAGTGGAAGTCTGGTTCCAAAACAGGAGAGCCAGGACTAAGCTGAAGCAAACAGAAGAGAGCTGCGAGCTGTTGAAGAAATGCTGCGAATCACTAACAGAAGAGAACAAGAGGCTAAAGAAAGAGCTTCAAGACATCAAATCAGTAAAATCAGCAGCTCATCCGCCATTTTATATGCAGCTCCAAACAGCAACTCTCTCCATGTGTCCCTCTTGCGAGAGAATTTGCAGTATCGGCGATGGCTCTTCCCCCACAAGCACTCTCTCAGTTGGTCCAAAATCTAACCTCTGTAATTCCCCTTGA 792 48.23 MGSDDVSTGLVLGLSHHPKAEKSLKSCHLKGKNPSSNFGSAFLSLGLSDETNPMATNSRVNTQLPYEPNDALRRQASASNSSSFKRDRDFCDGDEMEAEAEVELERISSRLSEEEEDGVGSPRKKLRLTKDQSAILECSFKEHATLNPKQKQELARRLSLSTRQVEVWFQNRRARTKLKQTEESCELLKKCCESLTEENKRLKKELQDIKSVKSAAHPPFYMQLQTATLSMCPSCERICSIGDGSSPTSTLSVGPKSNLCNSP 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28027205 28028282 + BLOR05023 Blo12g01004 68265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01004 263 ProSiteProfiles 'Homeobox' domain profile. 119 179 IPR001356 GO:0003677
Blo12g01004 263 ProSitePatterns 'Homeobox' domain signature. 154 177 IPR017970 GO:0000981|GO:0006355
Blo12g01004 263 SMART halz 179 224 IPR003106 GO:0006355|GO:0043565
Blo12g01004 263 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 62 249 - -
Blo12g01004 263 CDD homeodomain 122 180 IPR001356 GO:0003677
Blo12g01004 263 MobiDBLite consensus disorder prediction 1 28 - -
Blo12g01004 263 Pfam Homeodomain 123 177 IPR001356 GO:0003677
Blo12g01004 263 MobiDBLite consensus disorder prediction 51 89 - -
Blo12g01004 263 Coils Coil 178 212 - -
Blo12g01004 263 PANTHER - 62 249 - -
Blo12g01004 263 MobiDBLite consensus disorder prediction 51 65 - -
Blo12g01004 263 MobiDBLite consensus disorder prediction 106 125 - -
Blo12g01004 263 Gene3D - 117 186 - -
Blo12g01004 263 SUPERFAMILY Homeodomain-like 117 180 IPR009057 -
Blo12g01004 263 SMART HOX_1 121 183 IPR001356 GO:0003677
Blo12g01004 263 MobiDBLite consensus disorder prediction 243 263 - -
Blo12g01004 263 Coils Coil 97 117 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g01480 Blo12g01004 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g01279 Blo-Chr7:32988904 Blo12g01004 Blo-Chr12:28027205 8.51E-55 dispersed
Blo12g01004 Blo-Chr12:28027205 Blo14g00693 Blo-Chr14:15928520 5.19E-35 dispersed
Blo01g01480 Blo-Chr1:54162228 Blo12g01004 Blo-Chr12:28027205 1.57E-131 wgd
Blo12g01004 Blo-Chr12:28027205 Blo04g01103 Blo-Chr4:17324118 9.33E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13085 PF00046 Homeodomain 5.80E-17 CL0123 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01004 K09338 - qsu:111996753 236.498