Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01005 ATGGAGGAATTCAACCAGCTAAGCGAGAATTCAAATCACAGGGGAAGTTTCTTTTACACCTCGGCTCTTCTTGCAGGCAATTCTTCTCCTTCTAATCATGGAAGATCAACAACTGGAGGCTCAAACACGAGCTCTCGGCAAACCCAAATAGCCATTAATAGCTTTCATGGCGACAGCTTTCAGCCTGATCCTATCGTTAAAACGGAAGCCTTCACTTCGATGCACTGTGTTCAGAAACATCATCGTCCACTGATAAGAAGCCATCAAAGTTCGATTCAAAGGACTGATGAAGGCTCTAATGATGTTGAGGAGATTAAGGCTAAGATCATTGCCCATCCACAGTATTCTAACCTCTTGGAAGCTTATATGGATTGTCAAAAGGTCGGAGCTCCACCAGAAGTGGCGGCTAGTCTCGCTGAGGCTCGCCGGGAGTTTGAAGCGCGGCATCGAACTGTGTCAAGAGACAATTCGAACGATCCCGAACTTGATAAGTTCATGGAAGCATATTACGATATGCTGGTGAAGTATCGCGACGAGATTGCGAGGCCCATTCAAGAAGCAACGGATTTTATGCATCGGATTGAATCTCAACTCAATGCGCTTTGCAGTGGCCCTATCCGGATCTTCACCTTCGATGAAAAATGCGAAGGCAATGGCTCATCGGAGGACGATCAGGACAACAGCAGAGGGGAAACAGAACTGCCGGAGATGGATCCTAGGGCGGAAGATCGAGAACTGAAGAATCAGCTTCTGAGGAAGTACAGTGGCTATTTAGGCAGTCTGAAGCAAGAACTTTCGAAGAAAAAAAAGAAAGGAAAGCTACCCAAAGATGCAAGGCAAAAGCTTCTGAACTGGTGGGAGATGCATTACAAATGGCCATACCCGTCGGAGACGGAGAAGGTGGCGCTGGCCGAGTCGACCGGTTTGGACCAGAAACAAATCAACAATTGGTTCATAAATCAAAGGAAGAGACACTGGAAACCTTCAGACGACGGGCAATTCTTGGTAATGGATGGACTTTATCCTCCCAATGGAGGGCTCTGTATGGACTCCCACTACATGCCTAATGCCCATTATCGCCTCGGACCCTGA 1092 47.34 MEEFNQLSENSNHRGSFFYTSALLAGNSSPSNHGRSTTGGSNTSSRQTQIAINSFHGDSFQPDPIVKTEAFTSMHCVQKHHRPLIRSHQSSIQRTDEGSNDVEEIKAKIIAHPQYSNLLEAYMDCQKVGAPPEVAASLAEARREFEARHRTVSRDNSNDPELDKFMEAYYDMLVKYRDEIARPIQEATDFMHRIESQLNALCSGPIRIFTFDEKCEGNGSSEDDQDNSRGETELPEMDPRAEDRELKNQLLRKYSGYLGSLKQELSKKKKKGKLPKDARQKLLNWWEMHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSDDGQFLVMDGLYPPNGGLCMDSHYMPNAHYRLGP 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28031041 28033267 - BLOR05024 Blo12g01005 68266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01005 363 SMART KNOX2_2 152 203 IPR005541 GO:0003677|GO:0005634
Blo12g01005 363 SMART HOX_1 267 332 IPR001356 GO:0003677
Blo12g01005 363 MobiDBLite consensus disorder prediction 216 241 - -
Blo12g01005 363 ProSiteProfiles 'Homeobox' domain profile. 265 328 IPR001356 GO:0003677
Blo12g01005 363 SUPERFAMILY Homeodomain-like 266 339 IPR009057 -
Blo12g01005 363 ProSitePatterns 'Homeobox' domain signature. 303 326 IPR017970 GO:0000981|GO:0006355
Blo12g01005 363 Gene3D - 270 332 - -
Blo12g01005 363 SMART KNOX1_2 103 147 IPR005540 GO:0003677|GO:0005634
Blo12g01005 363 Pfam Homeobox KN domain 285 324 IPR008422 GO:0003677|GO:0006355
Blo12g01005 363 ProSiteProfiles ELK domain profile. 245 265 IPR005539 GO:0003677
Blo12g01005 363 CDD homeodomain 277 329 IPR001356 GO:0003677
Blo12g01005 363 Pfam KNOX2 domain 157 202 IPR005541 GO:0003677|GO:0005634
Blo12g01005 363 Pfam ELK domain 245 266 IPR005539 GO:0003677
Blo12g01005 363 MobiDBLite consensus disorder prediction 214 241 - -
Blo12g01005 363 Pfam KNOX1 domain 105 146 IPR005540 GO:0003677|GO:0005634
Blo12g01005 363 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 353 - -
Blo12g01005 363 SMART ELK_2 245 266 IPR005539 GO:0003677
Blo12g01005 363 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 353 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g01479 Blo12g01005 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g01005 Blo-Chr12:28031041 Blo13g00994 Blo-Chr13:32344218 1.89E-88 dispersed
Blo01g01479 Blo-Chr1:54145214 Blo12g01005 Blo-Chr12:28031041 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13086 PF03791 KNOX2 1.80E-22 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01005 - - vvi:100255834 504.982