Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01006 ATGAACAGAAATAACGATGAGGAGAAGACGATGGGATCTATGTTTCCAAGGCTTCATGTCAATGATAAAGAAAAAGGAGGGCCAAGAGCACCTCCAAGAAATAAGATGGCCCTTTATGAGCAACTTAGTATCCCCTCCCAAAGGTTCAATCCAGGCTTATTGCCTCCCAATTCTCTTCAAACTTCTTCAAGCAAGGGAATTGGCGTTGCAAGGAATTTGTTCGTCCCATTACACATGTCTCCGGTTGGCAACAATCTGGATGAAAAATTACATTCTCCATATAGTGGAGCCAATTTTGGCTTTCCGGTGACGCAAATTGTTCAAGAGAAGAGGGAAGGAGACGGAGATGATTTTAGTGTTACTGTGTATGTTCAATCAAGGACGAGGCAAAATGTGACTAAAGGAGAAAAGGTCGCTCCTGCCACCCCAAAACCTTTGAATCAACAGCTGCAAGGTGAAAGGGAGAGTGGTCAAAGACGTATTTTCTCCCTTAATACGAATTCGAAAGAAGACATAATAAGGAAGTCCAAAGTAAATGCATTGCAAGATCAAGAACTCGAAGATGTTGCCGTTTCTACTTCCGCCAAATTATTTGGAAAGAATAATAATGTTGTGGAGCCTAAGAGTAAGCGGAACAAAATGGAATCTGAAATTCCCCGGCCAAGAACTGCTCTCTCTTGTTCTGATGAGAATCATGCCAATCCGGAAGGATGTGATGGTGTGTATGTTAAGGGTGATTCACAGCAGAAGGGTAAGATTGATAGAACTGATGCAGTCTCTGAGATTTCAATGGTGGATTCTATTTCATGCTCAGATGTTTCTCCCGATGATGTTGTCGGAGTAATAGGTCAACGACACTTCTGGAAAGCCAGAGAAACGATTGCCAAGCAACAAAGAGTGTTTGCTCTTCAACTGTTTGAACTGCACAGATTGATGAAGGTCCAGCAGTTGATTGCGGGAACGCCACAGTTGTGCGTTGAAGATAGGGTTTTTCTTGCAAGTTCCACTCCAAAGGTCTCACCTACCACAAAACTTTCATCAGGATGTATCGATAAGTTGCCACTCGCCGTTATGAACTCTGAAGTCTCGAAAAAATCGAATCATAAAATGGAATGTTCAGCGGAGAATGAAATGAGCAATAATACATCTCTTTATTTTGCTAAAAATGGGCATCATTCAGGATCTCCACACTCTGTACATTCGGTGGCCGATCCAAACATGGCTAGCTGGTGTTTTCCTCAATCGCCGCCCACCCATCAATGGTTGATTCCTGTGATGTCTCCTTCTGAAGGGCTGGTATATAAGCCGTGTCCTGCAGCTGGATTTATCGGGACATTTCCTCCACCCTATGTTTTGCCCCAATCAATGGGCGGTTTTGCCAATCCAACCCAAGGAAATGGTGTTTTTCAGATAAATCCACCGACTGGGCATCATTATATCCATCCTTACAGCATGCTGCCCATGAATTCGACCGACTCAGGTTCAGTTGCAGACCAAATGAAATCGAGTAGTAGAACTGGTTCGAATTGTCAACAGAGCTGTTCTTATGTTCCTACTCAGAAAAGTGGCTTCGTTCCTTCAGTTGCTCGTGCAGCGAGTGAATTACAGACGAGAAGTGGAAGTTGTAATGGCAAGAAAGATCAGACTTCTAAAGGAAGGAATTCTCCAATTGTTGCAAAAATGGACCCCCAAACTCGTGGCTCTGACCAGCCAAACGGGGAAGTTAAGCTTTTCATTTTGAGTTTTGATTCTGCTCGAGCTGGAGAGAACAGAGGCGATCAGAGGATTCCATCGGTGATGAGATTAATCAAGATTGAGGCTGTTCTTCTTGGAGTTAATCTCAGTTTTGATTCTGCTCGAGCTGGAAAGAACAGAGGCGATCAGAGGATTCCATCGGTGATGAGATTAATCAAGATTGAGGCTGTTCTTCTTGGAGTTAATCTCAGATATTTTGAAGATCGCAGTGTAGCGAAGCCAGTAAAGACCACTTTTCTGCCATGTTTTGGGGAGCCTAATGCTCTGGAGAGTTGGATTAAGCCGCCATCAAACCTTATGCACACCATGACTGACGAAGAACTGCTGTGGAGAGCGTCGTTGTCGTCTGGAATAAAGAAGTATCCTTTCGATAGGATGCCTAAGATTGCTTTCATGTTCTTGACGAAGGGCCCGCTGCCATTGTCGCCGTTGTGGGAGAGGTTTCTGAAGGGGCACGAGGGGCTCTACTCTGTTTACGTTCATTCTTTGCCGTCTTTTGAAGCCAAATTTCACCCTTCTTCGGTGTTTTATCGGAAACAGGTTCCGAGCAAGGTTGCGGAGTGGGGAAGGATGAGTATGTGCGATGCCGAGAGAAGACTCTTAGCGAACGCATTGCTCGATATCTCCAACGAATGGTTTATTCTTCTTTCCGAATCATGCATTCCTCTCTACAACTTCATTAAGGTCTACAATTACTTGAGCAAGTCGAGATATAGCTTCGTGGGTTCATTCGATGACCGTGGCCCATTCGGGAGAGGTCGGTATAATCCAAACATGTCACCCGAGGTGAATATCACGGAATGGCGAAAAGGGTCTCAATGGTTTGAAGTTAATCGCGAGGTAGCAATGAGAATCATCGAGGACACCAAATATTACCCGAAATTCGAACAATTCTGTCGACCGGCTTGTTATGTAGACGAACACTATTTTCCGACGATGCTCACAATCGAAATGGGAAACGTTATGGCAAATAGAAGCATAACTTGGGTGGACTGGTCGAGGGGCGGGCCCCACCCGGCGACATTTGGGGGGTCGGACATATCGGAGGAGTTTTGGAAGAGAATCGTCGGGGGTCATAACTGTTCTTACAATGAGGAGTACACTCGGATATGTTTTCTTTTCGCGAGAAAGTTTGCTCCGAGTGCTTTGAACCCTCTTCTACATTTGGGATCAAAGGTATTAGGATATTAA 2946 44.67 MNRNNDEEKTMGSMFPRLHVNDKEKGGPRAPPRNKMALYEQLSIPSQRFNPGLLPPNSLQTSSSKGIGVARNLFVPLHMSPVGNNLDEKLHSPYSGANFGFPVTQIVQEKREGDGDDFSVTVYVQSRTRQNVTKGEKVAPATPKPLNQQLQGERESGQRRIFSLNTNSKEDIIRKSKVNALQDQELEDVAVSTSAKLFGKNNNVVEPKSKRNKMESEIPRPRTALSCSDENHANPEGCDGVYVKGDSQQKGKIDRTDAVSEISMVDSISCSDVSPDDVVGVIGQRHFWKARETIAKQQRVFALQLFELHRLMKVQQLIAGTPQLCVEDRVFLASSTPKVSPTTKLSSGCIDKLPLAVMNSEVSKKSNHKMECSAENEMSNNTSLYFAKNGHHSGSPHSVHSVADPNMASWCFPQSPPTHQWLIPVMSPSEGLVYKPCPAAGFIGTFPPPYVLPQSMGGFANPTQGNGVFQINPPTGHHYIHPYSMLPMNSTDSGSVADQMKSSSRTGSNCQQSCSYVPTQKSGFVPSVARAASELQTRSGSCNGKKDQTSKGRNSPIVAKMDPQTRGSDQPNGEVKLFILSFDSARAGENRGDQRIPSVMRLIKIEAVLLGVNLSFDSARAGKNRGDQRIPSVMRLIKIEAVLLGVNLRYFEDRSVAKPVKTTFLPCFGEPNALESWIKPPSNLMHTMTDEELLWRASLSSGIKKYPFDRMPKIAFMFLTKGPLPLSPLWERFLKGHEGLYSVYVHSLPSFEAKFHPSSVFYRKQVPSKVAEWGRMSMCDAERRLLANALLDISNEWFILLSESCIPLYNFIKVYNYLSKSRYSFVGSFDDRGPFGRGRYNPNMSPEVNITEWRKGSQWFEVNREVAMRIIEDTKYYPKFEQFCRPACYVDEHYFPTMLTIEMGNVMANRSITWVDWSRGGPHPATFGGSDISEEFWKRIVGGHNCSYNEEYTRICFLFARKFAPSALNPLLHLGSKVLGY 981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28042294 28050181 + BLOR05025 Blo12g01006 68267

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01006 981 MobiDBLite consensus disorder prediction 535 555 - -
Blo12g01006 981 Pfam Core-2/I-Branching enzyme 714 940 IPR003406 GO:0016020|GO:0016757
Blo12g01006 981 MobiDBLite consensus disorder prediction 491 511 - -
Blo12g01006 981 MobiDBLite consensus disorder prediction 1 30 - -
Blo12g01006 981 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 648 980 IPR044174 GO:0016757
Blo12g01006 981 MobiDBLite consensus disorder prediction 535 570 - -
Blo12g01006 981 PANTHER - 648 980 - -
Blo12g01006 981 MobiDBLite consensus disorder prediction 210 231 - -
Blo12g01006 981 MobiDBLite consensus disorder prediction 1 33 - -
Blo12g01006 981 MobiDBLite consensus disorder prediction 131 157 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01006 - - - jre:109014531 556.984
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g01006 Blo-Chr12:28042294 Blo18g00293 Blo-Chr18:3077377 6.50E-95 dispersed
Blo01g00507 Blo-Chr1:5610374 Blo12g01006 Blo-Chr12:28042294 6.17E-107 transposed
Blo01g00733 Blo-Chr1:9527240 Blo12g01006 Blo-Chr12:28042294 7.27E-112 transposed
Blo03g00285 Blo-Chr3:5742415 Blo12g01006 Blo-Chr12:28042294 1.02E-122 transposed
Blo16g00843 Blo-Chr16:35470028 Blo12g01006 Blo-Chr12:28042294 1.11E-67 transposed
Blo18g00052 Blo-Chr18:356027 Blo12g01006 Blo-Chr12:28042294 8.69E-67 transposed
Blo12g01006 Blo-Chr12:28042294 Blo17g00297 Blo-Chr17:3118503 9.47E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g51 . Blo12g01006 . Bda03g00151 . Bpe02g00478 . Bma01g02224 . . Cma01g01750 . Car09g00275 . . . Cpe06g00231 . . . . . . . Cla05g01814 Cam05g1938 Cec05g1951 Cco05g2012 Clacu05g1930 Cmu05g1812 Cre05g1938 Cone4ag1647 . . . Lsi04g01440 . . . . . Bda01g00970 . . Bpe04g00134 . . Sed11g1846 Cmo01g01759 Cmo09g00325 Cma09g00327 . Car01g01361 . . Cpe02g00248 Bhi09g03176 Tan01g4649 Cmetu07g0345 . Hepe01g1863 Mch11g0398 . . . . . . . . . . . Cme07g00243
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007702 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g01006 Blo_Chr12 FPKM 24.188976 26.614962 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0