Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01014 ATGACTCCAGTCTACCAGAAATCACCGTTTGTAGATCAGAAAGACGAAGATCAACAACGGTTTAAACTCTTCAGTTTTTCTCCAAATCAAGCTTCTTCTTCGCTCTCGTGTGCTGCTAGCTTCAGTGCAGTCGGTAAATCGTTATTTTTCGGGGCATCAACTGATCACGTGGTGATTTCTTCTCCCTCATCGTTTCTTCCTCCTGTGATCTGTGAAGAGAAAGTGGCCGTAATCACTGGAAATGAAGAGGAACATCACTCGAGTAAAAGAGATTTGCACGGATCAGTGAAATGGACGTCTTCAGAGATGAGGATTATGCAGAAAATGGTAAACAAGGATGCAGAAGCTGAAGCCGCCGGACAAGATTCCGGAAATCGTCAATATGAGAAGTCTGTAATGACTTCTTCTTCTTCCATAAGCAACAGCAACAAAATTACCATTAGGGTTTGCTCGGATTGTAAAACTACCACTACTCCTCTCTGGAGGAGTGGCCCTGAAGGACCTAAGTCTCTTTGCAATGCTTGTGGGATTAGGCAGAGGAAAGCGAGGAGGGCTATGGCGGAGGCTGCTGGAGCAGCCGCAAACAGTACAGTCGTCTCTTCCAACTCGCGATCGCTCAAGCAGAAAAAAGAAAAGAAATCAACAACGACGAGCCACGTTGGTCAAAACAAGAGTAAAATCAAGTTCACAGACACTGGTAATGGCGAGAGGAAGCTTTCTTTCAATAATTTAGCTCTGAGTTTGAGCAAGACTTCTCCATTTGGAAGAGTATTTCCTCGGGATGAAGAAGAAGCTGCAATCCTATTAATGGAGCTCTCTTGTGGATTTGTTCATAGTTGA 840 44.29 MTPVYQKSPFVDQKDEDQQRFKLFSFSPNQASSSLSCAASFSAVGKSLFFGASTDHVVISSPSSFLPPVICEEKVAVITGNEEEHHSSKRDLHGSVKWTSSEMRIMQKMVNKDAEAEAAGQDSGNRQYEKSVMTSSSSISNSNKITIRVCSDCKTTTTPLWRSGPEGPKSLCNACGIRQRKARRAMAEAAGAAANSTVVSSNSRSLKQKKEKKSTTTSHVGQNKSKIKFTDTGNGERKLSFNNLALSLSKTSPFGRVFPRDEEEAAILLMELSCGFVHS 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28084532 28085731 - BLOR05033 Blo12g01014 68275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01014 279 ProSitePatterns GATA-type zinc finger domain. 150 175 IPR000679 GO:0006355|GO:0043565
Blo12g01014 279 MobiDBLite consensus disorder prediction 192 232 - -
Blo12g01014 279 MobiDBLite consensus disorder prediction 218 232 - -
Blo12g01014 279 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 145 183 - -
Blo12g01014 279 Pfam GATA zinc finger 150 183 IPR000679 GO:0006355|GO:0043565
Blo12g01014 279 Gene3D - 145 227 IPR013088 GO:0006355|GO:0008270
Blo12g01014 279 ProSiteProfiles GATA-type zinc finger domain profile. 148 180 IPR000679 GO:0006355|GO:0043565
Blo12g01014 279 MobiDBLite consensus disorder prediction 113 135 - -
Blo12g01014 279 CDD ZnF_GATA 149 179 IPR000679 GO:0006355|GO:0043565
Blo12g01014 279 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 6 279 - -
Blo12g01014 279 Coils Coil 277 279 - -
Blo12g01014 279 SMART GATA_3 144 195 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01014 - - - qsu:112000518 166.777
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00548 Blo-Chr1:6030557 Blo12g01014 Blo-Chr12:28084532 3.13E-41 dispersed
Blo12g01014 Blo-Chr12:28084532 Blo18g00632 Blo-Chr18:10661695 1.78E-16 dispersed
Blo12g01014 Blo-Chr12:28084532 Blo07g00158 Blo-Chr7:2056960 1.85E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g104 . Blo12g01014 . . . Bpe02g00488 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe02g00259 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001864 2 2 2 1 4 2 3 2 2 2 2 2 1 2 2 2 2 5 3 2 2 2 2 2 2 2 2 4 2 2 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13087 PF00320 GATA 6.30E-17 CL0167 Blo TF