Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01023 ATGGAGGAAGTTCCTAGGGTGGAAGATACGAATGACGATGCTCCGTATAAATGTCCGGTGCTGAAGATCTTTAGAGATATTAAAGGTCGCCGGGCTGCCCTGGTTAAAGCTCTTACTACTGATGTTGAAGTCTTTTATCAGCAATGTGATCCCGAGAAGAAAAACCTCTGCCTTTATGGATATCCCAATGAGGAGTGGAGCGTCGACTTACCTGTCGCAGAGGTGCCTGCTGATCTTCCAGAACCTGTAGTGGGTATTAATTTTCTGAGAGATGAAATGGATAAAAAAGAATGGCTATCCTTGGTTGCTGCCCACAGTAATGCATGGTTGCTTGCTGTAGCTTTTTACCTCGGTGCTAGGGCTGGCTTTGATGAAGTTGATAGGCATCGTATTTTCAATTTGATAAACAATCTTCCAACATTATTTGAGGTCGTTACAGAGACCCCAAGGCAACAAGTGAAGGAGACGTCATCAGTTTCAAATCAGAAGGAAGAGGACGAGGAGGATGTCGTTGACTGGGAGCACGATGGATTGGGAGAAATTTTATGTGAAGTTTGCAGTGATATGTCTCCATCCGATGACTTCTGGATTTGCTGCGACTCGTGCGAAAAGTGGTTCCACGGTGAATGTGTCAAGATCACCCCAGCTATGCCAGAGCATATCAAGCACTACAAATGCCCATCTTGCAGCAACCAGAGTGCCCCGCCATACATCGAAATTGTTTAG 726 45.45 MEEVPRVEDTNDDAPYKCPVLKIFRDIKGRRAALVKALTTDVEVFYQQCDPEKKNLCLYGYPNEEWSVDLPVAEVPADLPEPVVGINFLRDEMDKKEWLSLVAAHSNAWLLAVAFYLGARAGFDEVDRHRIFNLINNLPTLFEVVTETPRQQVKETSSVSNQKEEDEEDVVDWEHDGLGEILCEVCSDMSPSDDFWICCDSCEKWFHGECVKITPAMPEHIKHYKCPSCSNQSAPPYIEIV 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28150001 28151545 - BLOR05042 Blo12g01023 68284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01023 241 Pfam Alfin 21 146 IPR021998 GO:0006355|GO:0042393
Blo12g01023 241 CDD PHD_AL_plant 182 232 IPR044104 -
Blo12g01023 241 ProSitePatterns Zinc finger PHD-type signature. 183 229 IPR019786 -
Blo12g01023 241 PANTHER CPG BINDING PROTEIN 20 162 IPR045104 GO:0006355|GO:0042393
Blo12g01023 241 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 162 234 - -
Blo12g01023 241 PANTHER CPG BINDING PROTEIN 162 234 IPR045104 GO:0006355|GO:0042393
Blo12g01023 241 Pfam PHD-finger 183 231 IPR019787 -
Blo12g01023 241 SMART PHD_3 182 230 IPR001965 -
Blo12g01023 241 ProSiteProfiles Zinc finger PHD-type profile. 180 232 IPR019787 -
Blo12g01023 241 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 20 162 - -
Blo12g01023 241 SUPERFAMILY FYVE/PHD zinc finger 162 231 IPR011011 -
Blo12g01023 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 236 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo12g01023 Blo17g00276 CCT
Blo12g01023 Blo17g00276 ECH
Blo01g01452 Blo12g01023 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g01023 Blo-Chr12:28150001 Blo12g00390 Blo-Chr12:20605029 7.03E-68 dispersed
Blo12g01023 Blo-Chr12:28150001 Blo12g01024 Blo-Chr12:28152758 5.66E-73 tandem
Blo01g01452 Blo-Chr1:53610034 Blo12g01023 Blo-Chr12:28150001 2.55E-84 wgd
Blo12g01023 Blo-Chr12:28150001 Blo17g00276 Blo-Chr17:2903439 2.00E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13088 PF12165 Alfin 4.80E-58 No_clan Blo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01023 - - rcu:8258558 308.916