Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01027 ATGGAACGTACCAAGTACGAAGCTTCAAAAGCTGGCGAAATAAGCTTGTCGGAAAAGAAAACGGCGAACGGAGGTGAAGTGGTAGTAGACATTGCGACCGAAATTGAGATTTCTTCGAAGCCGATAATAGAGTCTGAAAGTGTAAACCAGTCTGCATCAAAACCCAGAGAAGAACCTTCTTTTTCCAAACAATCTAGTGCAGATTCTCCTTCACGAGCATCAACAGAGTTAAGCCCTCATTTACCAAAGTCGATGATGATTAGCTCCAGTTCGCCGGAGCAGTCTAGGTACCCCCCGAGCTCGAATAAACCTCCGAAGATTCCTGACTTCAATGAAACAATTATCCGTAAAAGGTCCCTCTCAAGGTCTGTCTACTCTAAACCAAAATCAAGATTTGGGGAAGAACCTTGTCATATTAATTCCAACATGATTGAAGAAAATTACGCAACCTCGCTTGAACGAGTTGGTGCCAATTCCCCGCATAGATATTCCTTTAAACAGACTTCCCCTGGTAAATCTCAATTCACTGCAGTAACCCCAAAAATATCATTAATGGCCCCCTCAGACCTTCTGAAGGAGCACGACGATGAGGAGGAGATATTCAAGAAAGTCGAGTTGAATAAAGAGAAGCACAAGCGACTGAGACTGAAGCATGTAGTTGAATGGGTTGGAGTTTTATTCTTTGTGAGTTGCTTAATAGCGAGCTTAACCTATCGGCCATTGAAAAGCTCAGTGCTTTGGGGTTTAGAGAGCTGGAAATGGTGTCTGTTGATAACTGTCACATTCTGTGGCCTTCTGGTTACTACTTGGTTTATGCACTTAATTGTTTTCATGATTGAAATGAACTTTTTGCTGAGGAAGAAGGTCTTGTATTTCGTCCATGGGTTGAAGAAGACGGTCCAAGTTACCATATGGCTGGCTCTTGTACTTCTTACATGGATGCTCTTGTTTAAGGAGCTCGATCATAGTGTTTACAGATCGAAAACTACCAATCTAATTTTGCAGGATGTTACAATGACTCTAGCTTCTCTTCTGATCGGAGCATTTTTATGGCTTCTAAAAACTCTATTTCTGAAAATCCTGGCCTCCAAGTTTCACGTCAACCAATTTTTCGATCGAATTCAAGAAGCAATCTTTCATCAATATGTTCTGCAGACCCTCTCAGGGCCTCCTCTTATGGAGGAAGCTGAGAGGGTTGGACGATTATTGAGCACTGGTCAGATGAGTATCAGAAGCTCGAAGAATAATGGGAAGAAAAAGGAGGAGGTGATTGATATGGGAAAGCTTCACAAGATAAAGCAGGAAAAGGTTTCAGCTTGGACCATGAAAGTGTTGGTAGACGCAGTTACTAATTCTGAACTTAGTACAATTTCCAGGGCGCTGGAAGAAAGTTTCCAAGATGGAGAAGATGAGCAACTAGACAGTGAAATTACCAACGAAATGGAGGCAATTGCAGCAGCCTATAGGATATTCAGAAATGTTGCTCAGCCTGGTAGCACGCGCATCGAAGAGGATGATCTCCTCAGATTCATGATCAAAGAAGAAGTGGAGCTTGTGTTGCAGTTATTCTATGGAACTGTGACGAGAAAGATAGACAAAACATGTCTTACCAATTGGGTGGTGAAGGTTTACCAAGGGAGAAAAACTCTAGCACATGCTCTGAATGACACGAAAACGGCTGTGAAACAATTGAACAAGCTCGTGACGGTAATCGTATTTGTAGTAACCATCGTCGTGTGGCTTTTATTGATAGAAATAGCGACCACAAAAGTACTTCTTTTTCTCGGTTCTCAGCTTGTCGTGGCCGTTTTCATATTCGGAAACACGTGCAAAACTATTTTCGAGGCTTTGATTTTTGTCTTCGTTATGCATCCGTTCGACGTCGGTGATCGATGCGTCATCGATGGTGCTCCGATGATGGTGGAAGAAATGAACATCTTATCAACAGTTTTCTTGAAACTAAACAAGGAGAAGGTGTATTATCCAAACTCAGTTTTGGCAACAAAGCCTATAGGCAATTATTTCAGGAGCCCAAATATGAGCGACACAGTGCATTTCTCGATCGATTTCATGACGCCATTGGAGAGGATTGGAGCTATGAAGGAGAAGATACAGAGTTATTTGGAGAAAAATCCAAAGCTGTGGCAACCCACTCATAGTGTGGTAGTGAAGGAGATAGAAAATGTGAATGAGATTTCGATTGATCTGAATGTCAATCACACGATGAACTTCCAAGATTGGGGGGAGAAGAACAGGAGAAGAAGTGAACTCGTGATGGAGATGAGGAAAATTTTCCAAGATTTGAACATCAAGTATAATCTTTTGCACCAGAGAGTTCATCTCTGCACTGTCGAAGAGAATTGCTTTTCGACCCACAAATGA 2382 42.02 MERTKYEASKAGEISLSEKKTANGGEVVVDIATEIEISSKPIIESESVNQSASKPREEPSFSKQSSADSPSRASTELSPHLPKSMMISSSSPEQSRYPPSSNKPPKIPDFNETIIRKRSLSRSVYSKPKSRFGEEPCHINSNMIEENYATSLERVGANSPHRYSFKQTSPGKSQFTAVTPKISLMAPSDLLKEHDDEEEIFKKVELNKEKHKRLRLKHVVEWVGVLFFVSCLIASLTYRPLKSSVLWGLESWKWCLLITVTFCGLLVTTWFMHLIVFMIEMNFLLRKKVLYFVHGLKKTVQVTIWLALVLLTWMLLFKELDHSVYRSKTTNLILQDVTMTLASLLIGAFLWLLKTLFLKILASKFHVNQFFDRIQEAIFHQYVLQTLSGPPLMEEAERVGRLLSTGQMSIRSSKNNGKKKEEVIDMGKLHKIKQEKVSAWTMKVLVDAVTNSELSTISRALEESFQDGEDEQLDSEITNEMEAIAAAYRIFRNVAQPGSTRIEEDDLLRFMIKEEVELVLQLFYGTVTRKIDKTCLTNWVVKVYQGRKTLAHALNDTKTAVKQLNKLVTVIVFVVTIVVWLLLIEIATTKVLLFLGSQLVVAVFIFGNTCKTIFEALIFVFVMHPFDVGDRCVIDGAPMMVEEMNILSTVFLKLNKEKVYYPNSVLATKPIGNYFRSPNMSDTVHFSIDFMTPLERIGAMKEKIQSYLEKNPKLWQPTHSVVVKEIENVNEISIDLNVNHTMNFQDWGEKNRRRSELVMEMRKIFQDLNIKYNLLHQRVHLCTVEENCFSTHK 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28161603 28164680 + BLOR05046 Blo12g01027 68288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01027 793 PIRSF Memb_At2g17000 28 791 IPR016688 -
Blo12g01027 793 Gene3D - 625 674 IPR023408 -
Blo12g01027 793 Pfam Mechanosensitive ion channel 565 771 IPR006685 GO:0016020|GO:0055085
Blo12g01027 793 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 47 782 IPR016688 -
Blo12g01027 793 MobiDBLite consensus disorder prediction 1 26 - -
Blo12g01027 793 SUPERFAMILY Sm-like ribonucleoproteins 615 674 IPR010920 -
Blo12g01027 793 MobiDBLite consensus disorder prediction 39 113 - -
Blo12g01027 793 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 9 47 782 - -
Blo12g01027 793 MobiDBLite consensus disorder prediction 40 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01027 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - pvy:116117532 894.804
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01450 Blo12g01027 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00586 Blo-Chr4:5052791 Blo12g01027 Blo-Chr12:28161603 1.20E-64 dispersed
Blo08g00359 Blo-Chr8:5671483 Blo12g01027 Blo-Chr12:28161603 0 dispersed
Blo12g01027 Blo-Chr12:28161603 Blo15g00394 Blo-Chr15:5505605 1.63E-163 dispersed
Blo16g00657 Blo-Chr16:25998818 Blo12g01027 Blo-Chr12:28161603 0 transposed
Blo01g01450 Blo-Chr1:53576241 Blo12g01027 Blo-Chr12:28161603 4.47E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g144 Blo01g01450 Blo12g01027 . Bda03g00130 . . Bma04g00265 . . . Cma01g01705 . . . . . . . . . . . . . Cla05g01618 Cam05g1731 Cec05g1736 Cco05g1792 Clacu05g1720 Cmu05g1604 Cre05g1731 Cone4ag1693 . . . Lsi04g01394 . . . . . . . . Bpe04g00114 . . . Cmo01g01806 . . . Car01g01323 . . Cpe02g00286 Bhi09g03090 . . . . . . . . . . . . . . . . Cme07g00186
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo16g00585 BCT 1 571 Mechanosensitive Ion Channel Family AT4G00290 52.4 4.1e-147 518.5
Blo17g00099 . 686 1270 Mechanosensitive Ion Channel Family AT5G10490 59.0 2.6e-181 632.5
Blo18g00106 . 9 646 Mechanosensitive Ion Channel Family AT5G10490 53.6 2.2e-180 629.4
Blo05g00739 . 210 695 Mechanosensitive Ion Channel Family AT5G10490 62.2 4.1e-150 528.9
Blo18g00106 . 9 653 Mechanosensitive Ion Channel Family AT1G58200 55.1 1.3e-185 646.7
Blo17g00099 . 669 1266 Mechanosensitive Ion Channel Family AT1G58200 58.8 1.1e-184 643.7
Blo05g00739 . 210 666 Mechanosensitive Ion Channel Family AT1G58200 57.7 2.4e-134 476.5
Blo15g00394 . 611 1471 Mechanosensitive Ion Channel Family AT1G53470 52.7 1.1e-240 830.1
Blo15g00394 . 611 1473 Mechanosensitive Ion Channel Family AT3G14810 52.2 2.4e-232 802.4
Blo15g00394 . 611 1472 Mechanosensitive Ion Channel Family AT1G78610 58.1 5.0e-270 927.5
Blo15g00394 . 769 1468 Mechanosensitive Ion Channel Family AT2G17000 58.2 4.7e-220 761.5
Blo04g00586 . 217 602 Mechanosensitive Ion Channel Family AT2G17000 55.0 1.8e-110 397.5
Blo12g01027 BCT 16 781 Mechanosensitive Ion Channel Family AT5G19520 50.8 2.1e-195 679.5
Blo12g01027 BCT 71 781 Mechanosensitive Ion Channel Family AT5G12080 56.9 2.6e-214 742.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002739 1 4 1 1 1 2 2 2 2 3 2 2 1 3 3 1 2 3 1 2 3 1 0 2 2 2 1 6 1 0 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g01027 Blo_Chr12 FPKM 0.0 0.0 0.219614 0.0 0.0 0.0 0.0 0.0 0.0 0.293652