Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01027 ATGGAACGTACCAAGTACGAAGCTTCAAAAGCTGGCGAAATAAGCTTGTCGGAAAAGAAAACGGCGAACGGAGGTGAAGTGGTAGTAGACATTGCGACCGAAATTGAGATTTCTTCGAAGCCGATAATAGAGTCTGAAAGTGTAAACCAGTCTGCATCAAAACCCAGAGAAGAACCTTCTTTTTCCAAACAATCTAGTGCAGATTCTCCTTCACGAGCATCAACAGAGTTAAGCCCTCATTTACCAAAGTCGATGATGATTAGCTCCAGTTCGCCGGAGCAGTCTAGGTACCCCCCGAGCTCGAATAAACCTCCGAAGATTCCTGACTTCAATGAAACAATTATCCGTAAAAGGTCCCTCTCAAGGTCTGTCTACTCTAAACCAAAATCAAGATTTGGGGAAGAACCTTGTCATATTAATTCCAACATGATTGAAGAAAATTACGCAACCTCGCTTGAACGAGTTGGTGCCAATTCCCCGCATAGATATTCCTTTAAACAGACTTCCCCTGGTAAATCTCAATTCACTGCAGTAACCCCAAAAATATCATTAATGGCCCCCTCAGACCTTCTGAAGGAGCACGACGATGAGGAGGAGATATTCAAGAAAGTCGAGTTGAATAAAGAGAAGCACAAGCGACTGAGACTGAAGCATGTAGTTGAATGGGTTGGAGTTTTATTCTTTGTGAGTTGCTTAATAGCGAGCTTAACCTATCGGCCATTGAAAAGCTCAGTGCTTTGGGGTTTAGAGAGCTGGAAATGGTGTCTGTTGATAACTGTCACATTCTGTGGCCTTCTGGTTACTACTTGGTTTATGCACTTAATTGTTTTCATGATTGAAATGAACTTTTTGCTGAGGAAGAAGGTCTTGTATTTCGTCCATGGGTTGAAGAAGACGGTCCAAGTTACCATATGGCTGGCTCTTGTACTTCTTACATGGATGCTCTTGTTTAAGGAGCTCGATCATAGTGTTTACAGATCGAAAACTACCAATCTAATTTTGCAGGATGTTACAATGACTCTAGCTTCTCTTCTGATCGGAGCATTTTTATGGCTTCTAAAAACTCTATTTCTGAAAATCCTGGCCTCCAAGTTTCACGTCAACCAATTTTTCGATCGAATTCAAGAAGCAATCTTTCATCAATATGTTCTGCAGACCCTCTCAGGGCCTCCTCTTATGGAGGAAGCTGAGAGGGTTGGACGATTATTGAGCACTGGTCAGATGAGTATCAGAAGCTCGAAGAATAATGGGAAGAAAAAGGAGGAGGTGATTGATATGGGAAAGCTTCACAAGATAAAGCAGGAAAAGGTTTCAGCTTGGACCATGAAAGTGTTGGTAGACGCAGTTACTAATTCTGAACTTAGTACAATTTCCAGGGCGCTGGAAGAAAGTTTCCAAGATGGAGAAGATGAGCAACTAGACAGTGAAATTACCAACGAAATGGAGGCAATTGCAGCAGCCTATAGGATATTCAGAAATGTTGCTCAGCCTGGTAGCACGCGCATCGAAGAGGATGATCTCCTCAGATTCATGATCAAAGAAGAAGTGGAGCTTGTGTTGCAGTTATTCTATGGAACTGTGACGAGAAAGATAGACAAAACATGTCTTACCAATTGGGTGGTGAAGGTTTACCAAGGGAGAAAAACTCTAGCACATGCTCTGAATGACACGAAAACGGCTGTGAAACAATTGAACAAGCTCGTGACGGTAATCGTATTTGTAGTAACCATCGTCGTGTGGCTTTTATTGATAGAAATAGCGACCACAAAAGTACTTCTTTTTCTCGGTTCTCAGCTTGTCGTGGCCGTTTTCATATTCGGAAACACGTGCAAAACTATTTTCGAGGCTTTGATTTTTGTCTTCGTTATGCATCCGTTCGACGTCGGTGATCGATGCGTCATCGATGGTGCTCCGATGATGGTGGAAGAAATGAACATCTTATCAACAGTTTTCTTGAAACTAAACAAGGAGAAGGTGTATTATCCAAACTCAGTTTTGGCAACAAAGCCTATAGGCAATTATTTCAGGAGCCCAAATATGAGCGACACAGTGCATTTCTCGATCGATTTCATGACGCCATTGGAGAGGATTGGAGCTATGAAGGAGAAGATACAGAGTTATTTGGAGAAAAATCCAAAGCTGTGGCAACCCACTCATAGTGTGGTAGTGAAGGAGATAGAAAATGTGAATGAGATTTCGATTGATCTGAATGTCAATCACACGATGAACTTCCAAGATTGGGGGGAGAAGAACAGGAGAAGAAGTGAACTCGTGATGGAGATGAGGAAAATTTTCCAAGATTTGAACATCAAGTATAATCTTTTGCACCAGAGAGTTCATCTCTGCACTGTCGAAGAGAATTGCTTTTCGACCCACAAATGA 2382 42.02 MERTKYEASKAGEISLSEKKTANGGEVVVDIATEIEISSKPIIESESVNQSASKPREEPSFSKQSSADSPSRASTELSPHLPKSMMISSSSPEQSRYPPSSNKPPKIPDFNETIIRKRSLSRSVYSKPKSRFGEEPCHINSNMIEENYATSLERVGANSPHRYSFKQTSPGKSQFTAVTPKISLMAPSDLLKEHDDEEEIFKKVELNKEKHKRLRLKHVVEWVGVLFFVSCLIASLTYRPLKSSVLWGLESWKWCLLITVTFCGLLVTTWFMHLIVFMIEMNFLLRKKVLYFVHGLKKTVQVTIWLALVLLTWMLLFKELDHSVYRSKTTNLILQDVTMTLASLLIGAFLWLLKTLFLKILASKFHVNQFFDRIQEAIFHQYVLQTLSGPPLMEEAERVGRLLSTGQMSIRSSKNNGKKKEEVIDMGKLHKIKQEKVSAWTMKVLVDAVTNSELSTISRALEESFQDGEDEQLDSEITNEMEAIAAAYRIFRNVAQPGSTRIEEDDLLRFMIKEEVELVLQLFYGTVTRKIDKTCLTNWVVKVYQGRKTLAHALNDTKTAVKQLNKLVTVIVFVVTIVVWLLLIEIATTKVLLFLGSQLVVAVFIFGNTCKTIFEALIFVFVMHPFDVGDRCVIDGAPMMVEEMNILSTVFLKLNKEKVYYPNSVLATKPIGNYFRSPNMSDTVHFSIDFMTPLERIGAMKEKIQSYLEKNPKLWQPTHSVVVKEIENVNEISIDLNVNHTMNFQDWGEKNRRRSELVMEMRKIFQDLNIKYNLLHQRVHLCTVEENCFSTHK 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28161603 28164680 + BLOR05046 Blo12g01027 68288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01027 793 PIRSF Memb_At2g17000 28 791 IPR016688 -
Blo12g01027 793 Gene3D - 625 674 IPR023408 -
Blo12g01027 793 Pfam Mechanosensitive ion channel 565 771 IPR006685 GO:0016020|GO:0055085
Blo12g01027 793 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 47 782 IPR016688 -
Blo12g01027 793 MobiDBLite consensus disorder prediction 1 26 - -
Blo12g01027 793 SUPERFAMILY Sm-like ribonucleoproteins 615 674 IPR010920 -
Blo12g01027 793 MobiDBLite consensus disorder prediction 39 113 - -
Blo12g01027 793 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 9 47 782 - -
Blo12g01027 793 MobiDBLite consensus disorder prediction 40 97 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g01450 Blo12g01027 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00586 Blo-Chr4:5052791 Blo12g01027 Blo-Chr12:28161603 1.20E-64 dispersed
Blo08g00359 Blo-Chr8:5671483 Blo12g01027 Blo-Chr12:28161603 0 dispersed
Blo12g01027 Blo-Chr12:28161603 Blo15g00394 Blo-Chr15:5505605 1.63E-163 dispersed
Blo16g00657 Blo-Chr16:25998818 Blo12g01027 Blo-Chr12:28161603 0 transposed
Blo01g01450 Blo-Chr1:53576241 Blo12g01027 Blo-Chr12:28161603 4.47E-22 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01027 K22048 - pvy:116117532 894.804