Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01034 ATGCCTAGACTGGGCTCTGGTAAAGCCCAATACCAAGGGGCGCGAAGCTTGCTGAATACAATTTTCCCTCCGACTCGTCTTTCCCCAAACACATTCAAATCTACCAGGCACATTAGTCATTACGGCCATACCCAACCTGCTCCTCCCTCTTCTCTTCTCTTCTCTTCTCTTCTCTCCATCGTTTTCCAGACCAAACCAATGTGCTCCTCCGACTCCACTCTGCAACGCGATTCTCTTGACAATGCTCCTCGCTTCGTCTCTTTTGATATGTTCAACGAGGACGACGATGAAGATTTTCAGATATCTCTCACGCAAGCACTCCCTCCCCTTGATTCTATATCCCCAACAAAACCTCATGCACATTCCAACTGCGCTGTTTCATCACGCACTCTCGAGAATCCTGAGAAATTCAACCTCGCAGACATCGCTGACGAGAACATTCCCTCAGGATCCGGCCACAATTGGGAGTTTAACCCGCATTCTTCTCAAAATATTCCAATTACTGCTTCAACATCCTTACATTCTCGGAGAAATGAGGGTAGCTTGGCTTTAGGAGATAGCGAGGAATTGGATTACTTCGATTGGGATTCGGATTGCACGCTGGATTCAATTCAGCCTAGCGTCATTAATTATGGCTATATGGATCGCAGTTCCATTTTGGGGGATGATTCTGTTGACAGGGATGCTAATTTTTCGTTTGGCAATGATGAGAAAAAGGGATTGAATAAAAGCGAGGGCTATCAGTGCAATTCGATTGAATCAAGGTTAGTTAAATCCCGAGAAGCTTGCAGCATAAACATCAGTAATTACGACCCTCGCGTAGATATTAGTAATGATTTTGAAGCGGGTGGAGAGATTGATGTGTTGCTCAAGGTATGTTCGCATGTGGGGGATAAAAACGAGTTCAATGGCGTGGAGTTTGAGGAAGGGGAAATGGATAATTTGGGGGTTGGGAGAAGTCTAGTTCTATGTCCTCTCTGTGGCATAGACATTACAGACTTGACCAATGATCAACGACAGGTCCATACCAATGATTGCATTGACAAAGGGGAAACTCATGCTCACCATGCTGGTCTTTTTGGGGGTGAAAGTGGAACAGTCATTACTCAAAATGCTGGTGCTGATAACTCTCGGCTTTCTCCTGTTTGCAAGTGGCTCCATGAACTAGGTTTATCACGATATGAAGATGCTTTTGTTAGGGAAGAAATCGACTGGGAATCTCTAAAATGGCTAACAGAGGAGGATCTTCTCAGCATAGGTGTTACTGCACTTGGCCCCAGAAAAAAGATTGTCCATGCTCTTAGTGAACTCAGAATGGGAACTTCTCATGCGGTTGAGAAGAACTTGGATTCATGTGATTGTAGGGTGCCTGGATCAAGTAGAACCATTGCTTCAGAGGGGCACAATGTCACTTCTGAAAATCAAGTGGATGAAAGCAGCAAATTGTCTACAAACAAGTTGATTACGGATTATTTCTTGGGATTTTCTAATGCTAGGAAGAAGGTTCAAATCACCTCTACCAAACAAGATAAGGTAGTAAAAAAAGGTTCAGAGCCTGGCCCTAAAGGTACAAGGCGGAAAAGTTATGTCACAAATAGAAAGGGTCGTGATCTTCCCCTTTGGTGTTGTATTCCTGGAACGCCATTTCGAGTGTTAGTCTCAAAAAAGGTTGAAAAGATGAGTTTTAAAGGTTGTCTGAGCATGCTCTTTGATGCTTTCCAATATCTAAGAGGAGATTGTTCCCACTGGTTTCTCTCTCATTTTCATATGGATCATTACCAAGGTCTAACAAAGTCCTTCTGTCATGGAAAAATTTATTGCTCACATATCACAGCTAAACTTGTAAATATGAAGATTGGGATCCCATGGGAAAGGTTACAGGTTTTGCCTCTTAATGAAAAAATCAATGTTGCTGGCGTTGATGTAACCTGTTTGGATGCTAATCATTGCCCTGGTGCCATAATTATACTGTTTGAGCCACCCAATGGTAAGGCTGTTCTGCACACAGGCGATTTTCGATTTTGTGATCAAATGGCGAGCTTGTCAATTTTTCAAACGCATCATATTTGTACTTTAATTCTTGATACCACTTATTGTAATCCCCTGTATGATTTTCCGAAGCAGGAGGCTGTAATACAGTTTGTTCTTGATGCCGTTCAAGCTGAATCCTTCAATCCTAAGACTCTTTTTTTGATAGGAAGTTATACAATAGGGAAAGAGAGAATTTTTTTGGAGGTTGCTCGCGTACTTCGTAAAAAGGTGTACGTTACTGCTGCAAAATTGCGTATTCTGAGATGTTTAGGATTCCCTGGGGAGGACATGGAGTGGTTCACATCAAACGAAATGGAAAGTCATATACATATTGTGCCTATGTGGGCAGTTGCAAGCTTCAAACGACTAAAACATATGTCCACTCAATACGCGGGTCGATATAATCTCATAGTGGCATTCTCTCCCACTGGGTGGACATTCGGCAAGGGAAAGAAGAAGTCCCCTGGAAGAAAGTTGCAGCAAGGTACAATTATAAGGTATGAAGTGCCATACAGTGAGCATTCCAGCTTCACAGAGTTGAAAGAATTTGTGAAGCTTGTTTCTCCGGAGAAGATAGTACCGAGCGTGAATAATCATGGCCCTGATTCTGCCACTTCCATGATTTCTCTTCTTTCATCCTGA 2673 42.84 MPRLGSGKAQYQGARSLLNTIFPPTRLSPNTFKSTRHISHYGHTQPAPPSSLLFSSLLSIVFQTKPMCSSDSTLQRDSLDNAPRFVSFDMFNEDDDEDFQISLTQALPPLDSISPTKPHAHSNCAVSSRTLENPEKFNLADIADENIPSGSGHNWEFNPHSSQNIPITASTSLHSRRNEGSLALGDSEELDYFDWDSDCTLDSIQPSVINYGYMDRSSILGDDSVDRDANFSFGNDEKKGLNKSEGYQCNSIESRLVKSREACSINISNYDPRVDISNDFEAGGEIDVLLKVCSHVGDKNEFNGVEFEEGEMDNLGVGRSLVLCPLCGIDITDLTNDQRQVHTNDCIDKGETHAHHAGLFGGESGTVITQNAGADNSRLSPVCKWLHELGLSRYEDAFVREEIDWESLKWLTEEDLLSIGVTALGPRKKIVHALSELRMGTSHAVEKNLDSCDCRVPGSSRTIASEGHNVTSENQVDESSKLSTNKLITDYFLGFSNARKKVQITSTKQDKVVKKGSEPGPKGTRRKSYVTNRKGRDLPLWCCIPGTPFRVLVSKKVEKMSFKGCLSMLFDAFQYLRGDCSHWFLSHFHMDHYQGLTKSFCHGKIYCSHITAKLVNMKIGIPWERLQVLPLNEKINVAGVDVTCLDANHCPGAIIILFEPPNGKAVLHTGDFRFCDQMASLSIFQTHHICTLILDTTYCNPLYDFPKQEAVIQFVLDAVQAESFNPKTLFLIGSYTIGKERIFLEVARVLRKKVYVTAAKLRILRCLGFPGEDMEWFTSNEMESHIHIVPMWAVASFKRLKHMSTQYAGRYNLIVAFSPTGWTFGKGKKKSPGRKLQQGTIIRYEVPYSEHSSFTELKEFVKLVSPEKIVPSVNNHGPDSATSMISLLSS 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28217879 28223395 + BLOR05053 Blo12g01034 68295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01034 890 Gene3D - 569 873 IPR036866 -
Blo12g01034 890 PANTHER DNA CROSS-LINK REPAIR 1A PROTEIN 323 886 - -
Blo12g01034 890 SMART SAM_4 374 440 IPR001660 GO:0005515
Blo12g01034 890 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 323 886 - -
Blo12g01034 890 MobiDBLite consensus disorder prediction 506 522 - -
Blo12g01034 890 CDD SAM_superfamily 382 436 - -
Blo12g01034 890 ProSiteProfiles SAM domain profile. 377 440 IPR001660 GO:0005515
Blo12g01034 890 CDD SNM1A-1C-like_MBL-fold 527 701 - -
Blo12g01034 890 Pfam DNA repair metallo-beta-lactamase 773 876 IPR011084 -
Blo12g01034 890 Gene3D - 704 851 - -
Blo12g01034 890 SUPERFAMILY SAM/Pointed domain 377 439 IPR013761 -
Blo12g01034 890 Pfam SAM domain (Sterile alpha motif) 380 438 IPR001660 GO:0005515
Blo12g01034 890 Gene3D - 374 448 IPR013761 -
Blo12g01034 890 SUPERFAMILY Metallo-hydrolase/oxidoreductase 571 873 IPR036866 -
Blo12g01034 890 MobiDBLite consensus disorder prediction 506 529 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01034 K15340 DCLRE1A, SNM1A, PSO2; DNA cross-link repair 1A protein - csv:101218609 840.491
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g01158 Blo-Chr6:34986663 Blo12g01034 Blo-Chr12:28217879 4.72E-07 dispersed
Blo12g01034 Blo-Chr12:28217879 Blo17g00436 Blo-Chr17:5334955 4.47E-58 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g184 . Blo12g01034 . . . . . . . . . . Car09g00326 . . . . . . . . . . . Cla05g01642 Cam05g1752 Cec05g1761 Cco05g1817 Clacu05g1743 Cmu05g1628 Cre05g1755 Cone4ag1709 Cone7ag1626 . . Lsi04g01373 . . . . . . . . Bpe04g00105 . . . . Cmo09g00379 Cma09g00377 . . . . . Bhi09g03063 Tan01g3503 . . Hepe01g1928 Mch11g0465 . . . . . . . . . . . Cme07g00163
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008703 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g01034 Blo_Chr12 FPKM 2.007412 2.479025 3.87571 3.462441 4.32014 3.577413 3.614173 9.66545 10.422198 10.082629