Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Blo12g01039 | ATGGGCTATCTGAATTCAGTCTTGTCATGTTCGAGCCAGGTTCATGCCGCCGACGAAGCACCTGTAAGCGGCGGTGACCTCAGCCAAAATGGAAAGTTCAGCTATGGATATGCGAGCTTTCCAGGGAAACGGTCTTCAATGGAAGATTTTTATGAGACTCGAATAGATGGCGTTGATGGAGAAATAGTAGGCCTCTTTGGGGTTTTTGACGGTCATGGTGGTGCACGGGCTGCTGAGTATGTGAAGCAAAACTTGTTTAGTAATTTGATCCAGCACCCTAAGTTCATTTCTGATACCAAATCTGCTATAGCTGAGGCCTACAACCGTACAGACTCAGAGTTTCTAAAATCAGAAAATAATCAGAACAGGGATGCTGGATCGACTGCTTCCACTGCTATTTTAGTTGGTAACCGTTTGCTTGTTGCTAATGTTGGGGATTCCAGAGCTGTCATATGCCGTGGTGGAAACGCTATTGCTGTCTCACGAGACCACAAACCCAATCAATCAGATGAAAGACAACGAATCGAAGATGCTGGAGGATTTGTGATATGGGCAGGAACTTGGAGAGTTGGAGGAGTTCTTGCTGTTTCACGTGCATTTGGTGATAGGCTGTTGAAGCAATATGTTGTCGCCGATCCAGAAATTCAGGAGGAAAAAGTCGACAGCTCTCTTGAGTTTCTCATTCTTGCAAGTGATGGACTGTGGGATGTTGTATCTAACGAGGAGGCAGTTGCGATGATAAAACCAATCCAGGATCCCGAGGAGGCCGCCAAAAGGTTGATGCAGGAAGCATATCAGAAAGGCAGTGCCGATAACATAACCTGTGTAGTTGTACGTTTCTTGGACAGTCCCGGTGCTTCCTCTTGCGAAACTTCCTGA | 879 | 46.3 | MGYLNSVLSCSSQVHAADEAPVSGGDLSQNGKFSYGYASFPGKRSSMEDFYETRIDGVDGEIVGLFGVFDGHGGARAAEYVKQNLFSNLIQHPKFISDTKSAIAEAYNRTDSEFLKSENNQNRDAGSTASTAILVGNRLLVANVGDSRAVICRGGNAIAVSRDHKPNQSDERQRIEDAGGFVIWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDSSLEFLILASDGLWDVVSNEEAVAMIKPIQDPEEAAKRLMQEAYQKGSADNITCVVVRFLDSPGASSCETS | 292 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 28238832 | 28243077 | - | BLOR05058 | Blo12g01039 | 68300 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Blo12g01039 | 292 | ProSitePatterns | PPM-type phosphatase domain signature. | 65 | 73 | IPR000222 | GO:0043169 | |
| Blo12g01039 | 292 | ProSiteProfiles | PPM-type phosphatase domain profile. | 34 | 280 | IPR001932 | - | |
| Blo12g01039 | 292 | Gene3D | - | 26 | 283 | IPR036457 | - | |
| Blo12g01039 | 292 | Pfam | Protein phosphatase 2C | 62 | 273 | IPR001932 | - | |
| Blo12g01039 | 292 | PANTHER | PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C | 3 | 287 | - | - | |
| Blo12g01039 | 292 | SMART | PP2C_4 | 24 | 278 | IPR001932 | - | |
| Blo12g01039 | 292 | SMART | PP2C_SIG_2 | 45 | 280 | IPR001932 | - | |
| Blo12g01039 | 292 | CDD | PP2Cc | 33 | 280 | IPR001932 | - | |
| Blo12g01039 | 292 | PANTHER | ALPHABET, ISOFORM E-RELATED | 3 | 287 | - | - | |
| Blo12g01039 | 292 | SUPERFAMILY | PP2C-like | 28 | 280 | IPR036457 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Blo11g00033 | Blo-Chr11:266677 | Blo12g01039 | Blo-Chr12:28238832 | 6.17E-60 | dispersed | |
| Blo11g00112 | Blo-Chr11:853891 | Blo12g01039 | Blo-Chr12:28238832 | 2.49E-52 | dispersed | |
| Blo12g00317 | Blo-Chr12:18627616 | Blo12g01039 | Blo-Chr12:28238832 | 7.36E-19 | dispersed | |
| Blo12g01039 | Blo-Chr12:28238832 | Blo14g00764 | Blo-Chr14:22841536 | 2.71E-68 | dispersed | |
| Blo18g00040 | Blo-Chr18:265747 | Blo12g01039 | Blo-Chr12:28238832 | 7.21E-46 | dispersed | |
| Blo02g01218 | Blo-Chr2:44150731 | Blo12g01039 | Blo-Chr12:28238832 | 9.04E-28 | transposed | |
| Blo07g00329 | Blo-Chr7:4261195 | Blo12g01039 | Blo-Chr12:28238832 | 1.52E-28 | transposed | |
| Blo09g00036 | Blo-Chr9:503286 | Blo12g01039 | Blo-Chr12:28238832 | 3.76E-123 | transposed | |
| Blo01g01427 | Blo-Chr1:53080047 | Blo12g01039 | Blo-Chr12:28238832 | 0 | wgd | |
| Blo12g01039 | Blo-Chr12:28238832 | Blo17g00260 | Blo-Chr17:2646590 | 1.28E-49 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Blo12g01039 | K17506 | - | gmx:100795017 | 530.791 |