Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01041 ATGGCGTTGGTTCGACCTTTCACTCTACTCTCGCAACCTCCTCTTTCCCAAGCTCATAAGACAATATCTTTACCCAACTTATTCTTCTCTTCAACTCTTTCCACGCCTTTATGTTCCGAAAAGAGGTTCGCTGAGTTTTGTGTTGCCGCAAATCCAGCCGAAATTTCGCCTGGGCTTGATCGGGAGGAGGGCGGAGACGGGGTTATTTTGGGTCGCGATTCTGAGGAGGAGCGACGATCGGAGAGAATCAAGGCGGAGTATGATTGGACAGAAGAATGGTATCCGCTGTACCTGACGGAGAACGTACCGGACGATGCTCCACTTGGTCTTTTAGTGTTCGATAAGAAGCTAGTGCTCTATCGTGATGGCTCCGGTGAACTTCGGTGTCACGAAGATAGATGCCCCCATCGATTGGCAAAACTATCTGAAGGCCAACTGATGGATGGGAGGCTGGAATGTCTGTATCATGGCTGGCAATTCGATGGAGCCGGTAAATGCATGTTAGCTTACTCGCTCGCACTGTTGATTTCCAGCCATTCTCTATTAAATGAGCTTGTTGAATTTTTTTCTACCCAGCTTCCGAGCCTCGCGAAGATTCCTAAATCAGCATGCCTAAAAACATATGACGTTAGAGATTCCCAAGGAGTTGTGTGGGTGTGGATGTCACAAAAAACTTCTCCAAACCTCAGTAAAATGCCATGGTTTGATAATTTTGCTAAACCGGGGTTTCAAGATATTTCAACGACTCACGAGCTTCCTTATGATCACTCAATCCTTCTTGAGAACCTCATGGATCCAGCACACATACCAATCTCACACGACAGAACAGATTTTACAGCCAAAAGAGAAGACGCACAGGCGTTATCTTTTGAAGTGGTTGAGCGTACTGATCGTGGATTTGCTGGGTGGTGGGGTAGGGCAAAAGATCAACCACTGCCAAACTTCTTGAGGTTTGAGGCGCCTTGTGTTCTCCAAAATAACAGAGATATTGTATCTGCCAATGGGAAAGTAGATTACTTCTCAGGTCTCTTTCTTTGTAGACCAACTGGCCAGGGTAAATCCATGTTAATAGTAAGGTTTGGATCAACAAGAAGGTCGTTCCTAACCAAACTGTTACCAAAATGGTACTTACATCAGAATGGAGCCAAGGTCTTTGAGCAAGACATGGGATTCCTTTCTTCCCAAAATGAGGTTTTGATGCGAGAAAAGGTCCCTACAAAGGACCTTTACCTAAACTTGAGATCCTCAGACACATGGGTGGCTGAATATCGGAAGTGGATGGACAAAGTTGGGCATGGGATGCCTTACCATTTCGGGCATAGTACTATTTCTTTGCCAAAGGAGCCTGCAGTTGTGGAACATACACCAGCAGGATTAGTTGCAGGGCTTTCGGCATCTTTACCTGCTAAAGGTGGAATTGGTACGATTTATGCTCCAAATTTAGCTAACAGATACTTCCGTCACATTGTTCATTGCCAAGGGTGTAGAAGTGTGGTCAAAGCTTTTCAAGCTTGGAAGGATGCTCTTGCTGTTGTGGCATTTGCATTTGCTGCATCGGCTATTTTGGTGTCAGGAAGGCAATGGAAGGCCCTCCTTTTAGTGTCTGCAGTCATGTGCTCTGCTGGGGCTTATACTTGCTCAGCTGCTATAGCAATGAACACAAATAACTTCATCAGAATTCACAGGAGATTATAA 1695 45.43 MALVRPFTLLSQPPLSQAHKTISLPNLFFSSTLSTPLCSEKRFAEFCVAANPAEISPGLDREEGGDGVILGRDSEEERRSERIKAEYDWTEEWYPLYLTENVPDDAPLGLLVFDKKLVLYRDGSGELRCHEDRCPHRLAKLSEGQLMDGRLECLYHGWQFDGAGKCMLAYSLALLISSHSLLNELVEFFSTQLPSLAKIPKSACLKTYDVRDSQGVVWVWMSQKTSPNLSKMPWFDNFAKPGFQDISTTHELPYDHSILLENLMDPAHIPISHDRTDFTAKREDAQALSFEVVERTDRGFAGWWGRAKDQPLPNFLRFEAPCVLQNNRDIVSANGKVDYFSGLFLCRPTGQGKSMLIVRFGSTRRSFLTKLLPKWYLHQNGAKVFEQDMGFLSSQNEVLMREKVPTKDLYLNLRSSDTWVAEYRKWMDKVGHGMPYHFGHSTISLPKEPAVVEHTPAGLVAGLSASLPAKGGIGTIYAPNLANRYFRHIVHCQGCRSVVKAFQAWKDALAVVAFAFAASAILVSGRQWKALLLVSAVMCSAGAYTCSAAIAMNTNNFIRIHRRL 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28255029 28257104 + BLOR05060 Blo12g01041 68302

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01041 564 Pfam Pheophorbide a oxygenase 318 403 IPR013626 GO:0010277
Blo12g01041 564 SUPERFAMILY Bet v1-like 215 433 - -
Blo12g01041 564 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 93 219 IPR017941 GO:0051537
Blo12g01041 564 Gene3D - 88 238 IPR036922 GO:0051537
Blo12g01041 564 PANTHER PROTEIN TIC 55, CHLOROPLASTIC 192 564 - -
Blo12g01041 564 PANTHER PROTEIN TIC 55, CHLOROPLASTIC 66 167 - -
Blo12g01041 564 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 192 564 - -
Blo12g01041 564 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 66 167 - -
Blo12g01041 564 Gene3D - 241 432 - -
Blo12g01041 564 Pfam Rieske [2Fe-2S] domain 92 167 IPR017941 GO:0051537
Blo12g01041 564 SUPERFAMILY ISP domain 82 225 IPR036922 GO:0051537
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01041 - - - jre:109005194 820.461
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01424 Blo12g01041 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g01041 Blo-Chr12:28255029 Blo03g01072 Blo-Chr3:37121528 6.16E-44 dispersed
Blo01g01424 Blo-Chr1:53038210 Blo12g01041 Blo-Chr12:28255029 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g610 Blo01g01424 Blo12g01041 Bda01g00654 . . Bpe02g00226 . Bma01g02181 . . . . Car09g00342 . . . Cpe06g00281 . . . . . . . Cla05g01660 Cam05g1771 Cec05g1779 Cco05g1838 Clacu05g1761 Cmu05g1647 Cre05g1775 Cone4ag1731 Cone7ag1650 . . Lsi04g01356 . . . . . . . . Bpe04g00097 . . Sed13g1947 . Cmo09g00395 Cma09g00393 . . . . . Bhi09g03043 Tan01g3529 Cmetu07g0445 . Hepe01g1944 Mch11g0480 . . . . . . . . . . . Cme07g00144
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009854 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g01041 Blo_Chr12 FPKM 9.236658 11.664205 10.967638 10.600576 16.10236 14.173169 17.13427 11.902681 11.449977 11.9139