Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01043 ATGACTTTCTATCTGCCTGTATCAGTCTTCAAAAACTGGATATGCGGCCCATTGAATACAAACTCTGCCAGTAATCTTGAAAATGACCCCATTGTCACTAAAACAACTTTAAGTGGGCTTGAAACCCCTCTTAGAGTCGGCGAAATACATCAAAATAGAGAACCTGATATGAGATGCTGCCTAATAACTGATAAAGATCTCTGCGAAAGCGAAGAGGGGCGGTCTTTATTGTCTAGAAAGGACGAAGAGAAGCATCACCTGCCAGATTCAGGGAGTGAGCTTAGTCCATGGGAGATTGTCAAGTATAGCCTTTATCTTACTCCCTTATGGTTTATTACAGAGTATTTCTCAAACTCTGCACTGGCAAATACCAGCGTCGCGAGTACAACTGTTCTAACTTCAATGTCGGGTCTTTTTACTTTAATATTTGGAGCTCTTCTTGGCCAAGATAACATAAATATCCCCAAAGTGGTCGCTGTTTTCATTAGCATGGCTGGAGTTGCCATGACCACTGTGGGGAAAACTTGGACGTCAGATGAACTACTCAGTACGTCGGAGACTAGACGGCACTCTATTCTTGGTGACACTTTCGGTCTCCTCTCTGCAGCATTCTATGGCTTATTTACAGTTCTGCTAAAAAAATATGCTGGATCAGAAGGACACAAAGTGGACGTGCAAAAGTTCTTCGGTTTTATTGGTCTCTTTACACTAATTGGTCTTTGGTGGCTTGTCTGGCCCCTCAGTGCCGCTGGTATTGAACCTGTTTTTGAGTTTCCGCATTCCGCGTCGACCTCTGAATTTGTGCTCTTAAATGGCTTTTTGGGGAGTGTTGTTTCAGATTACTTCTGGGCTCTTTCGGTCGTGTGGACTTCGCCCTTGGTTGCGACGCTGGGCATGTCTTTGACAATTCCGCTTGCAATGATTGCCGATATGCTAATACATGCTCGTCATTACTCTGCAATCTATATCCTTGGATGTGTTCAGTATTGCCGGACTGGATTGATGGATGAAGTAAAGGGTAACAGAATGGAGAAAGGAAAGGGAGTGGCTGTTGGAGGGCGAAGATGGGGCGTTGATTTCTCTGACAATTCCTCCTCTTCTTCCACCCGCGATGTCCCCGATCCTCCTGGTTTTGCTCGTGCCTCCCTGGATCAGGATGATTCCACTCTCTCTCGCCAGAAGAAGGATGCCGAATCCACTTGGAAGTCTCAGAAAGCTTGGGAAGTGGCTCAGGCTCCTTTCAAGAATTTGCTTATGATGGGCTTTATGATGTGGATGGCTGGAAGTACAGTACATTTGTTCAGCATTGGAATCACATTTTCTGCTCTTTGGCAGCCAATAAGTGCGTTGCAGGGCGTTGGTAAAGTTTTTGAGCCTTATAAAGATAATAAGGTGGAACTACTTGGCCCCAAGTTACTCTTCATTGCACTTAATCTTGGTGGATTAGCACTGGGTGTTTGGAAGCTTAACACTCTGGGGCTACTGCCAACCCACGTATCTGATTGGGTTTCATCGTTGCCACCTGCTCAGTGCAGTGCAGTTTTATCGCAGTCTCACCATCGCAAATTCATCGTCTCAGTCTGTGAAGCTTCTCTCCCTCGTCCCAGTCTCCGTGAATCTTTCTTTACCGGTTCGGTTCCTAAAAAAAGGCTTAAGATGAGTTCTTTCTCTATTACAAGGAAAAAGACTCCATTTCAGAAACACAGAGAGGAGGAAGAGGCAAAGAAAAAGAGAGCGGATGATGAAACTGCTCGACTGTATGCGGAATTTGTGGAGTCATTTCAGGGAGAATCTGGGGCAAAGGCTTTTGTTCGAGGAGGAACTATTGATCCTAACGAGAGAATAAAGGATGTTGAAGGTGAAAAGTCGAAAGATGAGGTGTCTGTTCCAAAGAAGGGAAGTAGATATGTTCCATCTTTCATACCCCCTCCAATGGTATCGAAGGGAAGGGAATCAGAAAAGAAAAAGGAGGAGGACAAACCAAAAGAAAAAGAGAAAGGGAAGTCTCGAAATATAGATCATTTTATGGAGGAGTTGAAGCATGAGCAAGAGATGAGGGAGAGACGAAATCAAGATCGTGAATACTATCGTGAGGGACGCCAGAGTGAAAGTTCTGCTCCATCAAGTCGCTTTGATGAATTGCCTGATGACTTTGATCCGAGTGGAAAATTTGCTGGATCCTTTGACGATGGTGATCCACAAACTACTAATCTCTATGTTGGAAATCTGTCACCAAAGGTTGATGAAAATTTTCTTCTTCGCACATTTGGAAGATTTGGGCCCATTGCTAGTGTCAAGATTATGTGGCCACGAACTGAAGAGGAGCGGAGGAGGCAAAGAAATTGTGGTTTTGTCGCTTTTATGAATAGACCTGATGGTCAGGCTGCGAAAGATGAAATGCAAGGGGTTATTGTTTATGAATATGAGTTAAAAATAGGATGGGGCAAATCTGTGGCTCTCCCTTCACAAGCTCTACCAGCACCCCCACCAGGACAAATGGCCATCAGGAGCAAGGAGGGTGCTACTGTAATCTTATCTGGTCCATCTGGACCACCTGTCACTTCAGTTCCAAACCAGAATTCTGAACTGGTTCTTACTCCAAACGTACCTGATATTACTGTTGTTCCACCTGAGGATGATCATCTCCTCCATGTGATTGATACAATGGCTCTTTTTGTTCTTGATGGAGGGTGTTCCTTTGAACAAGCTATTATGGAGAGGGGGCGAGGGAATCCTCTTTTCAACTTCTTGTTTGAGCTTGGCTCTAAAGAACACACGTATTACGTTTGGAGACTTTACTCATTTGCTCAGACCACTCTGGCTCACAATAGAACTGTTCTTCCACCAACGGCGGACACCTCGGCTTATGATAGTGCAGTTCTTCACAACGACCCACCAACGGTGGACAGTCTGGTTTGTGGTAGCGCTACTCTTCTCGTCGACCCACAATCGACGGACCCTCTGGTTCGCGGTGACGTTGGTGATACTCTCCAAAGATGGCGAACAGAACCTTTTATCATGATAACTGGTAGTGGAAGATGGATCCCACCACCTTTGCCAACAGCTAAAAGTCCAGAGCATGAAAAAGAATCTGGTACCACATATGCCGCTGGAAGAAGCAAGCGCTTGGAGCTGGAAAGAGCATTGACCGACTCTCAAAGGGATGAGTTTGAGGACATGCTCCGCGCTTTGACATTGGAGAGGAGCCAAATTAAGGAAGCTATGGGGTTTGCATTGGATAATACAGATGCAGCTGGAGAGGTTGTGGAAGTTCTGACTGAATCTTTGACGCTTAAAGAAACCCCTATTCCTACTAAAGTTGCGAGGCTGATGCTTGTATCTGATATTCTCCATAATAGTAGTGCCCCTGTAAAGAATGCATCTGCATATAGGACAAAATTTGAAGCAACATTACCTGATATTATGGAGAGCTTTAATGATCTATATAGAAGCATTACTGGAAGGATAACAGCAGAGGCCCTTAAGGAACGAGTACTGAAAGTGTTACAAGTGTGGTCAGATTGGTTTTTATTTTCAGATGCATATGTAAATGGATTGCGAGCCACTTTTCTTAGATCAGGAAGCTCTGGGGTGATTTCTTTTCATTCTATTTGTGGTGATGCCCCTGATGTAGACAAAAAGACCAATTGTGAGGATTCAGGTGGTTTGGCCAAGATCAATCAAGATGCTGCACTGGCAATGAATAAAGGGGCAGCTACAAAGGAACTAATGAATCTCCCATTAGCTGAGTTGGAGAGGCGTTGTAGACATAATGGATTGTCCCTTGTTGGTGGTAGAGAAATAATGGTTGCAAGGTTGCTCAGTCTTGAAGAAGCAGAAAAACAAAGAGGGTATGAGATAGAAGATGACTTTAAATATGCTCAAGGCCATTCAAGCACAGGCAGACTTTCTGGTAGTCAGGGTGCAATGAGTGCTGAACATGAGTTAGGTGGTTTATCTGGATGGAACCGTTACAGAGAGGAGGAGATTCAGTCATTGGGAAAAGGCTCTGCACCTTTGGCTCAGACCTTACCCATTCCGCACCCTGAACTGAAAGCATTTTCAAAGAAAGATAAAAGTGATCCTGTTTTACCAGCCTCTAAGTGGGCTAGAGAGGATGATGAAAGTGATGATGAACAAAAGCAAAGTGCCCGGCAGCTTGGGTTAAGTTATTCATCTTCTGGAAGTGAGAATGCTGAAGAAGGTCCTAGTAAAACAGATGAGGTAGAATTTTCCACTGATTCTGGCATATCATCGCAAATGGAGAATGGAATGAGTGATGAACAGAGACAAAAGTTAAGACGCCTTGAGGTTGCCTTGATTGAGTATCGTGAATCCCTTGAAGACCAAGGAATAAGAAGTTTTGAAGAAATTGAGAGGAAAGTTGCCACTCGTCGAAAGCTTCTAGAATCTGAATTTGGGTTATCAAATTTCAATGACGATGCTTCAGGGAAGAAGAGGAGAGACAGACGTGATGATATCCACGATTCCACAAGAAAGCGAAACCGTAGTCAGAGTACTGACAGGGAAAGAGATTATGGTATGGACAGGGACCGAGAAAGACTCAGAGAAAGAGATCGTGAGAAGGGTGGCAGTAAAGAGAAAGACGACCATGACAGGGATCGAAACAGGGAAAAAGAAAAAGACAGGAGGAGAAGAGCAAAATGA 4668 44.3 MTFYLPVSVFKNWICGPLNTNSASNLENDPIVTKTTLSGLETPLRVGEIHQNREPDMRCCLITDKDLCESEEGRSLLSRKDEEKHHLPDSGSELSPWEIVKYSLYLTPLWFITEYFSNSALANTSVASTTVLTSMSGLFTLIFGALLGQDNINIPKVVAVFISMAGVAMTTVGKTWTSDELLSTSETRRHSILGDTFGLLSAAFYGLFTVLLKKYAGSEGHKVDVQKFFGFIGLFTLIGLWWLVWPLSAAGIEPVFEFPHSASTSEFVLLNGFLGSVVSDYFWALSVVWTSPLVATLGMSLTIPLAMIADMLIHARHYSAIYILGCVQYCRTGLMDEVKGNRMEKGKGVAVGGRRWGVDFSDNSSSSSTRDVPDPPGFARASLDQDDSTLSRQKKDAESTWKSQKAWEVAQAPFKNLLMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPYKDNKVELLGPKLLFIALNLGGLALGVWKLNTLGLLPTHVSDWVSSLPPAQCSAVLSQSHHRKFIVSVCEASLPRPSLRESFFTGSVPKKRLKMSSFSITRKKTPFQKHREEEEAKKKRADDETARLYAEFVESFQGESGAKAFVRGGTIDPNERIKDVEGEKSKDEVSVPKKGSRYVPSFIPPPMVSKGRESEKKKEEDKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQDREYYREGRQSESSAPSSRFDELPDDFDPSGKFAGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRPDGQAAKDEMQGVIVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTSVPNQNSELVLTPNVPDITVVPPEDDHLLHVIDTMALFVLDGGCSFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQTTLAHNRTVLPPTADTSAYDSAVLHNDPPTVDSLVCGSATLLVDPQSTDPLVRGDVGDTLQRWRTEPFIMITGSGRWIPPPLPTAKSPEHEKESGTTYAAGRSKRLELERALTDSQRDEFEDMLRALTLERSQIKEAMGFALDNTDAAGEVVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGSSGVISFHSICGDAPDVDKKTNCEDSGGLAKINQDAALAMNKGAATKELMNLPLAELERRCRHNGLSLVGGREIMVARLLSLEEAEKQRGYEIEDDFKYAQGHSSTGRLSGSQGAMSAEHELGGLSGWNRYREEEIQSLGKGSAPLAQTLPIPHPELKAFSKKDKSDPVLPASKWAREDDESDDEQKQSARQLGLSYSSSGSENAEEGPSKTDEVEFSTDSGISSQMENGMSDEQRQKLRRLEVALIEYRESLEDQGIRSFEEIERKVATRRKLLESEFGLSNFNDDASGKKRRDRRDDIHDSTRKRNRSQSTDRERDYGMDRDRERLRERDREKGGSKEKDDHDRDRNREKEKDRRRRAK 1555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28264295 28283789 + BLOR05062 Blo12g01043 68304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01043 1555 MobiDBLite consensus disorder prediction 1409 1426 - -
Blo12g01043 1555 PANTHER RNA PROCESSING PROTEIN LD23810P 542 944 - -
Blo12g01043 1555 PANTHER RNA PROCESSING PROTEIN LD23810P 994 1550 - -
Blo12g01043 1555 MobiDBLite consensus disorder prediction 1368 1382 - -
Blo12g01043 1555 SUPERFAMILY Multidrug resistance efflux transporter EmrE 96 174 - -
Blo12g01043 1555 Gene3D - 1425 1476 - -
Blo12g01043 1555 ProSiteProfiles CID domain profile. 1049 1194 IPR006569 -
Blo12g01043 1555 Coils Coil 569 589 - -
Blo12g01043 1555 SUPERFAMILY Surp module (SWAP domain) 859 937 IPR035967 GO:0003723|GO:0006396
Blo12g01043 1555 CDD RRM_SR140 735 818 IPR035009 -
Blo12g01043 1555 Pfam CID domain 1056 1184 IPR006569 -
Blo12g01043 1555 SMART cwf21_2 1425 1473 IPR013170 -
Blo12g01043 1555 Coils Coil 1054 1074 - -
Blo12g01043 1555 MobiDBLite consensus disorder prediction 1470 1555 - -
Blo12g01043 1555 SMART 558neu5 1056 1191 IPR006569 -
Blo12g01043 1555 MobiDBLite consensus disorder prediction 1368 1430 - -
Blo12g01043 1555 Pfam EamA-like transporter family 108 171 IPR000620 GO:0016020|GO:0016021
Blo12g01043 1555 SMART rrm1_1 737 813 IPR000504 GO:0003723
Blo12g01043 1555 MobiDBLite consensus disorder prediction 613 732 - -
Blo12g01043 1555 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 736 817 IPR000504 GO:0003723
Blo12g01043 1555 Pfam Protein of unknown function (DUF1077) 394 506 IPR009445 -
Blo12g01043 1555 ProSiteProfiles SURP motif repeat profile. 885 928 IPR000061 GO:0003723|GO:0006396
Blo12g01043 1555 SMART surpneu2 883 937 IPR000061 GO:0003723|GO:0006396
Blo12g01043 1555 SUPERFAMILY RNA-binding domain, RBD 730 826 IPR035979 GO:0003676
Blo12g01043 1555 Pfam cwf21 domain 1427 1470 IPR013170 -
Blo12g01043 1555 PANTHER - 542 944 - -
Blo12g01043 1555 PANTHER - 994 1550 - -
Blo12g01043 1555 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 738 810 IPR000504 GO:0003723
Blo12g01043 1555 Gene3D - 646 819 IPR012677 -
Blo12g01043 1555 Gene3D Surp module 871 940 IPR035967 GO:0003723|GO:0006396
Blo12g01043 1555 MobiDBLite consensus disorder prediction 1383 1400 - -
Blo12g01043 1555 Pfam Surp module 883 935 IPR000061 GO:0003723|GO:0006396
Blo12g01043 1555 SUPERFAMILY ENTH/VHS domain 1051 1191 IPR008942 -
Blo12g01043 1555 MobiDBLite consensus disorder prediction 648 700 - -
Blo12g01043 1555 MobiDBLite consensus disorder prediction 1481 1548 - -
Blo12g01043 1555 Gene3D - 1050 1195 IPR008942 -
Blo12g01043 1555 MobiDBLite consensus disorder prediction 613 631 - -
Blo12g01043 1555 Coils Coil 1426 1446 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01043 K12842 SR140; U2-associated protein SR140 - ppp:112275949 980.319
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01421 Blo12g01043 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00439 Blo-Chr5:5932954 Blo12g01043 Blo-Chr12:28264295 1.47E-24 dispersed
Blo12g01043 Blo-Chr12:28264295 Blo12g01070 Blo-Chr12:28440393 1.79E-112 dispersed
Blo06g01195 Blo-Chr6:35465413 Blo12g01043 Blo-Chr12:28264295 9.19E-07 transposed
Blo01g01421 Blo-Chr1:52967214 Blo12g01043 Blo-Chr12:28264295 5.24E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g599 Blo01g01421 Blo12g01043 Bda01g00657 Bda03g00109 . Bpe02g00530 Bma04g00101 Bma01g02177 . . Cma01g01677 . Car09g00346 . . . Cpe06g00285 . . . . . . . Cla05g01665 Cam05g1779 Cec05g1785 Cco05g1845 Clacu05g1768 Cmu05g1652 Cre05g1781 Cone4ag1736 Cone7ag1655 Cone17ag0971 Cone20ag0313 Lsi04g01350 . . . . . . . . Bpe04g00093 . . Sed05g1760 Cmo01g01727 Cmo09g00399 Cma09g00398 . Car01g01292 . . Cpe02g00314 Bhi09g03037 Tan01g3535 Cmetu07g2294 . Hepe01g1950 Mch11g0486 . . . . . . . . . . . Cme07g00138
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005029 1 2 1 1 1 1 2 1 1 3 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g01043 Blo_Chr12 FPKM 76.567726 81.450623 65.31427 65.795197 63.490685 61.401382 59.82975 98.004883 100.015587 112.12941