Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01052 ATGTCGGACGAGGAGCATAACTTCGAGTCCAAGGCCGACGCTGGAGCCTCCAAGACCTATCCTCAGCAGGCTGGAACTATCCGCAAGAACGGTTACATCGTCATCAAGGGCCGTCCCTGCAAGGTCGTTGAGGTTTCTACTTCCAAGACAGGGAAGCACGGACACGCAAAGTGCCACTTTGTGGCTATTGATATTTTTACTGCCAAGAAACTCGAGGATATTGTCCCATCGTCCCACAACTGTGATGTTCCTCACGTTACTCGTACTGATTATCAGCTGATTGACATATCTGAAGATGGATTTTTGAGTCTTTTGACTGATTCAGGTAGCACAAAAGATGACTTGAGACTTCCTACTGATGATAACCTGCTCACTCAGGCAAGGGACCTGAACTTTTATCTACTGCATTTGAACATCATCCACAATTTGATTTCTTTCCCGTTTTGTTTTGCCTCACACTTGTTAACACATGCTCTTTGGGGATTTATTCAGATTAAGGAAGGATTTGCTGAGGGGAAGGACCTTGTGCTGACAGTCATGTCATCAATGGGAGAAGAACAAATATGTGCCCTCAAGGACATTGGTCCCAAGAACTAA 597 45.39 MSDEEHNFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFLSLLTDSGSTKDDLRLPTDDNLLTQARDLNFYLLHLNIIHNLISFPFCFASHLLTHALWGFIQIKEGFAEGKDLVLTVMSSMGEEQICALKDIGPKN 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28322063 28323548 - BLOR05071 Blo12g01052 68313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01052 198 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Blo12g01052 198 SMART eIF_5a_2 85 192 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Blo12g01052 198 PIRSF Transl_init_eIF5A 1 132 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Blo12g01052 198 PIRSF Transl_init_eIF5A 162 195 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Blo12g01052 198 SUPERFAMILY Nucleic acid-binding proteins 86 129 IPR012340 -
Blo12g01052 198 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 166 194 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Blo12g01052 198 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 164 192 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Blo12g01052 198 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 128 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Blo12g01052 198 Gene3D - 1 85 IPR014722 -
Blo12g01052 198 Gene3D - 86 131 IPR012340 -
Blo12g01052 198 Gene3D - 163 196 IPR012340 -
Blo12g01052 198 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 123 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Blo12g01052 198 MobiDBLite consensus disorder prediction 1 21 - -
Blo12g01052 198 PANTHER BNAA07G09420D PROTEIN 166 194 - -
Blo12g01052 198 PANTHER BNAA07G09420D PROTEIN 1 123 - -
Blo12g01052 198 CDD S1_eIF5A 86 194 - -
Blo12g01052 198 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Blo12g01052 198 TIGRFAM eIF_5A: translation elongation factor IF5A 17 125 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo12g01052 Blo17g00003 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00921 Blo-Chr6:32453612 Blo12g01052 Blo-Chr12:28322063 4.02E-70 dispersed
Blo11g00789 Blo-Chr11:11920878 Blo12g01052 Blo-Chr12:28322063 7.25E-105 dispersed
Blo12g01052 Blo-Chr12:28322063 Blo16g00178 Blo-Chr16:3985046 1.43E-96 dispersed
Blo01g01418 Blo-Chr1:52859890 Blo12g01052 Blo-Chr12:28322063 2.13E-86 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01052 K03263 - csv:101214693 290.812