Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Blo12g01052 | ATGTCGGACGAGGAGCATAACTTCGAGTCCAAGGCCGACGCTGGAGCCTCCAAGACCTATCCTCAGCAGGCTGGAACTATCCGCAAGAACGGTTACATCGTCATCAAGGGCCGTCCCTGCAAGGTCGTTGAGGTTTCTACTTCCAAGACAGGGAAGCACGGACACGCAAAGTGCCACTTTGTGGCTATTGATATTTTTACTGCCAAGAAACTCGAGGATATTGTCCCATCGTCCCACAACTGTGATGTTCCTCACGTTACTCGTACTGATTATCAGCTGATTGACATATCTGAAGATGGATTTTTGAGTCTTTTGACTGATTCAGGTAGCACAAAAGATGACTTGAGACTTCCTACTGATGATAACCTGCTCACTCAGGCAAGGGACCTGAACTTTTATCTACTGCATTTGAACATCATCCACAATTTGATTTCTTTCCCGTTTTGTTTTGCCTCACACTTGTTAACACATGCTCTTTGGGGATTTATTCAGATTAAGGAAGGATTTGCTGAGGGGAAGGACCTTGTGCTGACAGTCATGTCATCAATGGGAGAAGAACAAATATGTGCCCTCAAGGACATTGGTCCCAAGAACTAA | 597 | 45.39 | MSDEEHNFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFLSLLTDSGSTKDDLRLPTDDNLLTQARDLNFYLLHLNIIHNLISFPFCFASHLLTHALWGFIQIKEGFAEGKDLVLTVMSSMGEEQICALKDIGPKN | 198 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 28322063 | 28323548 | - | BLOR05071 | Blo12g01052 | 68313 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Blo12g01052 | 198 | SUPERFAMILY | Translation proteins SH3-like domain | 15 | 93 | IPR008991 | - | |
Blo12g01052 | 198 | SMART | eIF_5a_2 | 85 | 192 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Blo12g01052 | 198 | PIRSF | Transl_init_eIF5A | 1 | 132 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Blo12g01052 | 198 | PIRSF | Transl_init_eIF5A | 162 | 195 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Blo12g01052 | 198 | SUPERFAMILY | Nucleic acid-binding proteins | 86 | 129 | IPR012340 | - | |
Blo12g01052 | 198 | PANTHER | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER | 166 | 194 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Blo12g01052 | 198 | Pfam | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 164 | 192 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Blo12g01052 | 198 | Pfam | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 85 | 128 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Blo12g01052 | 198 | Gene3D | - | 1 | 85 | IPR014722 | - | |
Blo12g01052 | 198 | Gene3D | - | 86 | 131 | IPR012340 | - | |
Blo12g01052 | 198 | Gene3D | - | 163 | 196 | IPR012340 | - | |
Blo12g01052 | 198 | PANTHER | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER | 1 | 123 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Blo12g01052 | 198 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Blo12g01052 | 198 | PANTHER | BNAA07G09420D PROTEIN | 166 | 194 | - | - | |
Blo12g01052 | 198 | PANTHER | BNAA07G09420D PROTEIN | 1 | 123 | - | - | |
Blo12g01052 | 198 | CDD | S1_eIF5A | 86 | 194 | - | - | |
Blo12g01052 | 198 | ProSitePatterns | Eukaryotic initiation factor 5A hypusine signature. | 50 | 57 | IPR019769 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Blo12g01052 | 198 | TIGRFAM | eIF_5A: translation elongation factor IF5A | 17 | 125 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Blo12g01052 | Blo17g00003 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Blo06g00921 | Blo-Chr6:32453612 | Blo12g01052 | Blo-Chr12:28322063 | 4.02E-70 | dispersed | |
Blo11g00789 | Blo-Chr11:11920878 | Blo12g01052 | Blo-Chr12:28322063 | 7.25E-105 | dispersed | |
Blo12g01052 | Blo-Chr12:28322063 | Blo16g00178 | Blo-Chr16:3985046 | 1.43E-96 | dispersed | |
Blo01g01418 | Blo-Chr1:52859890 | Blo12g01052 | Blo-Chr12:28322063 | 2.13E-86 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Blo12g01052 | K03263 | - | csv:101214693 | 290.812 |