Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01054 ATGGAGGAAACCAAAAACAAGCCAAAGGAAAATCCTGAGTTGAGGCAGCCATGTTTTCTCTCCACACAAGAGACAGCTAGGAATAGAATCAGATCATTGGATAATCAGACGACGATACGAATGAATCGCCATAGCCGTAATCCTTTTGCGTTTTCCGTTTCCTTTTTCAATTGCTGCTATTCCACTGATGTTTTGGAAGACGAAGAATATAAAGCCTATATAGGAGCCACAGTGGGTCAACTTCGTGAGCATCTCCCTGATGCTTCGTTCATGGTATTCAACTTCCGAGAGGGGGAGAACCAAAGTCAGTTAGCAAATATTCTAGCTGAGCATGACATGATTGTAATGGACTATCCTCGACATTACGAAGGCTGCCCTCTTCTGACCATGGAGATGATCCATCATTTCTTGAGGTCGAGTGAAAGTTGGCTTTCACTTGGGCAACAAAATGTGCTTTTGATGCATTGCGAGCGAGGTGGGTGGCCTGTTTTGGTCTTTATGTTGGCTTCACTCTTGATATATAGGAAGCAGTACAGTGGGGAACAGAAAACTCTTGACATGGTTTACAGGCAGGCACCTAAGGAACTTTTACAGTTGATGACACCTGTCAACCCATTGCCTTCACAGTTGAGGTACCTTCAATATGTATCGAGAAGAAATGTCTCTACAGAATGGCCTCCATTAGATAGGGGGCTTACTTTGGACTGCATCATTATACGATTTATTCCTCATTTGGACGGTGATGGTGGTTTCAGACCAATTTTTAGAATATATGGGCAGGATCCACTTATGGCTAATGATAGGATTCCTAAAGTTTTGTTCTCAACACCAAAAAGAAGCAAGCTCATTCGGTATTTTAAACAGGCAGACTGTGAGCTTGCCAAAATTGACATCCGTTGCCATATCCAAGGAGATGTTGTTCTTGAATGTATAAATTTGGACGAGGATTTGGAACGTGAGGAGATGATATTTCGTGTTATGTTTAATACGGCCTTCATAAGGTCGAATATTTTGATGCTTGGACGAAATGAGATTGATAGTTTATGGAATGCCAAGGATCAGTTCCCTAAGGATTTTAGAACCGAGGTTCTTTTTTCAGAGATGAATCTTGCTACTTCTCTTATTTCAATGGATTTGCCCATTATTGAAGAGAAGGAGGAACTTCCTATTGAAGCATTTGCTAAGGTTCAAGAGATATTTAGCAATATAGATTGGCTAGGTTCAAGAACAGATGAGACGCTAAATTTACTCCAGCGTCTCAAATCTTCAAGTGCACTTCAAGAAAAAATGACTACGACTTCTACTTGCAATTATGAAGCAGGAAACTTGTCGCAGCTAACTCCCAATAAACTTAATTTAGAATCACAGTTATCAGACATAGCTGAAGAAACAGGTAAAGACAAGATCAAATCCTCAGTGTTGCAGATTTCTAGCGAACAAGCTGCACCACTTTCATCTTGTGATTCATCACAAGGGTGTCCTGTTACTTTAGATGTAGATCCTCCTGCACCTCCTGCTTCATTTGTTGAGGCTCCAATCAAGGATCTTGCTACCCTTAATATTAATGAGTTCACACAGCCATTGGCAGTATCTTCACCTACCTCTGCAACTTCAGCACCTGATGTTTTGAATATCACTAAACCAGAAACTGGCAATCTGCACATTATATCTTTGCCGTCGGTTCAGGCCCCTTCAACCATGCCACCTGAACCACCACCTTTCACTGTAGGGCCTTTTGTACCAACTTCGCCATTGATAAGTTCTCCGGCACACGCAGAAGAATCTTTTTCCACCCCATGTCAGTCAGTGCATCATCAACCCAGTTCAGATCAAACACTTTCATCACTAGCTCAACTCCCTCAAAAAACGTTATTTGGTGGAAATCAATCATCAAGTGTTTCTCTTTCTTCTCCATCTCACTCTCTTTCACAGAATTCTCCATCCTTGTCTTCTATGATTTCCACTTCAATTCCGCCTTCCCCTCCTCCTCCCCCGTCCTTTTCTGGCAGATTGCAATCAACCTCTGTGTTTAACTCATTACCAACTTCTCTTCCCCTTACTTCCTCTGTTATTTCAGAAACATCCCAACCTTCTTATGTCAAAAATTCATATTCTGCTCCCCCGCCCCCTCCTCCTCCTCCAGCACCTTCCTCTGCAAAATTGCTATCATCTGCTGCTACGAACTCACTGTCAATTCCCTCTCCTCCTCCACCCCCAGCAATTCCATCTTCAGTTGCCTATCTTTCTCCATCTCAGCTGGAAACAAAAAAAATAACATTTACGCCTTCTCCTCCTCCCCCACCTCCACATTCTGGGCCCATCTTGTCTGTTTCTGTTTTACCTTCAGCGTCACCACCAGCACCACCTCCTCCTGCTCCTCCAGGCAATGCAATGATGAAAGCTCCTTTGCAGTCTATTTCTGGAGCTTCCAAAGCCATACCTGCAATCCCTGGACCGCCATCCAACATTTCTCTCAGTGCAAAGGGCCGGGGCTTAAGCCGTGTGAGTCCCAAAAATCAGAGCCAAAATAAAAGGGCCAATCTGAAGCCATATCATTGGTTGAAGTTAACAAGGGCTATGCATGGAAGTTTATGGGCGGAGGCTCAGAGGGCTGGTGAAGCTACCAAGACACCAGAGTTTGATATGTCAGAACTAGAGAGGCTTTTCTCGGCTACTGTGCCAAATTCAGATCATGGAAACAATGGTGGAAAGTCAAAACGACATGGGTCTAGAGCTAAATCAGACAAAGTTCAATTGATTGAACTGAGGAGAGCATATAACTGTGAGATCATGCTCTCAAAGGTCAAAATTCCTTTGCCTGATTTGATGGGATCAGTTCTTGCCTTGGACGAGTCAGCTTTGAGTGTGGATCAGGTTGAGAACCTCATAAAGTTTTGTCCAACGAAAGAAGAGATGGAACTTCTCAAGGGGTATAGTGGAGATAAAGAAAACTTAGGAAAATGTGAAATTTTCTTTCTAGAATTGATGAAAGTACCACGTGTAGAGTCCAAGCTAAGAGTTTTTTCTTTTAAGATTCAGTTCCAGTTGCAGATCAGGGGTTCGCTCAAGTTGAGAAGAGTGATGCAGACCATTCTTTCTTTGGGTAATGCTTTAAACCAGGGAACTGCAAGAGGATCTGCTATTGGATTTCGACTCGATAGTCTTCTTAAGCTCGCTGATACACGAGCTCGTAACAGTAAGATGACTCTTGTGCATTATCTGTGCAAGGTGCTTTCTGAAAAGCTACCAGAACTTTCAGATTTTTCAAAGGACCTTGAGAATTTGGAGGCTTCAACGAAGATACAATTGAAATACTTGGCTGAAGAAATGCAAGCCATAAGCAAGGGGCTTGAGAAGGTTGTTCAGGAATTGACTTCAGCAGAAAACGACGGACCTGTGTCTGAGTATTTTTGCAAGGCTTTAAAGAATTTCCTTTCTCAGGCTGAGGCTGAAGTGAGGTCTTTAACCTCACTTTATTCTAATGTGGGTAGAAATGCAGATGCATTAGCACTATATTTTGGAGAGGATCCATCCCGTTGCCCATTTGAACAAGTTGTATCTACCTTGTATAGCTTCGTAAAAACTTTTGAGCGAGCGCATGAGGAAAACTGCAAACAGCTTGAATTTGAAAAGAAGAAAATGCAAAAAGAGACAGAAATCGAGAAGCTAAAGACCAGTTTTTCAAGGAATGTGTCTGATAACTCTATACAGATGCCAATAAAAAGTGGTGACATCCATTAA 3741 42.42 MEETKNKPKENPELRQPCFLSTQETARNRIRSLDNQTTIRMNRHSRNPFAFSVSFFNCCYSTDVLEDEEYKAYIGATVGQLREHLPDASFMVFNFREGENQSQLANILAEHDMIVMDYPRHYEGCPLLTMEMIHHFLRSSESWLSLGQQNVLLMHCERGGWPVLVFMLASLLIYRKQYSGEQKTLDMVYRQAPKELLQLMTPVNPLPSQLRYLQYVSRRNVSTEWPPLDRGLTLDCIIIRFIPHLDGDGGFRPIFRIYGQDPLMANDRIPKVLFSTPKRSKLIRYFKQADCELAKIDIRCHIQGDVVLECINLDEDLEREEMIFRVMFNTAFIRSNILMLGRNEIDSLWNAKDQFPKDFRTEVLFSEMNLATSLISMDLPIIEEKEELPIEAFAKVQEIFSNIDWLGSRTDETLNLLQRLKSSSALQEKMTTTSTCNYEAGNLSQLTPNKLNLESQLSDIAEETGKDKIKSSVLQISSEQAAPLSSCDSSQGCPVTLDVDPPAPPASFVEAPIKDLATLNINEFTQPLAVSSPTSATSAPDVLNITKPETGNLHIISLPSVQAPSTMPPEPPPFTVGPFVPTSPLISSPAHAEESFSTPCQSVHHQPSSDQTLSSLAQLPQKTLFGGNQSSSVSLSSPSHSLSQNSPSLSSMISTSIPPSPPPPPSFSGRLQSTSVFNSLPTSLPLTSSVISETSQPSYVKNSYSAPPPPPPPPAPSSAKLLSSAATNSLSIPSPPPPPAIPSSVAYLSPSQLETKKITFTPSPPPPPPHSGPILSVSVLPSASPPAPPPPAPPGNAMMKAPLQSISGASKAIPAIPGPPSNISLSAKGRGLSRVSPKNQSQNKRANLKPYHWLKLTRAMHGSLWAEAQRAGEATKTPEFDMSELERLFSATVPNSDHGNNGGKSKRHGSRAKSDKVQLIELRRAYNCEIMLSKVKIPLPDLMGSVLALDESALSVDQVENLIKFCPTKEEMELLKGYSGDKENLGKCEIFFLELMKVPRVESKLRVFSFKIQFQLQIRGSLKLRRVMQTILSLGNALNQGTARGSAIGFRLDSLLKLADTRARNSKMTLVHYLCKVLSEKLPELSDFSKDLENLEASTKIQLKYLAEEMQAISKGLEKVVQELTSAENDGPVSEYFCKALKNFLSQAEAEVRSLTSLYSNVGRNADALALYFGEDPSRCPFEQVVSTLYSFVKTFERAHEENCKQLEFEKKKMQKETEIEKLKTSFSRNVSDNSIQMPIKSGDIH 1246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28328199 28337365 + BLOR05073 Blo12g01054 68315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01054 1246 ProSiteProfiles Formin homology-2 (FH2) domain profile. 838 1222 IPR015425 -
Blo12g01054 1246 MobiDBLite consensus disorder prediction 782 797 - -
Blo12g01054 1246 Pfam Formin Homology 2 Domain 840 1196 IPR015425 -
Blo12g01054 1246 MobiDBLite consensus disorder prediction 562 673 - -
Blo12g01054 1246 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 87 217 IPR029021 -
Blo12g01054 1246 MobiDBLite consensus disorder prediction 826 844 - -
Blo12g01054 1246 MobiDBLite consensus disorder prediction 698 745 - -
Blo12g01054 1246 Coils Coil 1197 1217 - -
Blo12g01054 1246 MobiDBLite consensus disorder prediction 588 655 - -
Blo12g01054 1246 ProSiteProfiles C2 tensin-type domain profile. 229 368 IPR014020 -
Blo12g01054 1246 SMART it6_source 838 1244 IPR015425 -
Blo12g01054 1246 SUPERFAMILY Formin homology 2 domain (FH2 domain) 915 1225 - -
Blo12g01054 1246 Pfam C2 domain of PTEN tumour-suppressor protein 232 367 IPR014020 -
Blo12g01054 1246 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 232 368 IPR035892 -
Blo12g01054 1246 Gene3D Protein tyrosine phosphatase superfamily 52 229 IPR029021 -
Blo12g01054 1246 MobiDBLite consensus disorder prediction 892 913 - -
Blo12g01054 1246 MobiDBLite consensus disorder prediction 760 774 - -
Blo12g01054 1246 PANTHER FORMIN-J 44 1228 - -
Blo12g01054 1246 SMART PTEN_C2_2 227 367 IPR014020 -
Blo12g01054 1246 MobiDBLite consensus disorder prediction 757 844 - -
Blo12g01054 1246 Gene3D - 230 370 - -
Blo12g01054 1246 MobiDBLite consensus disorder prediction 703 718 - -
Blo12g01054 1246 MobiDBLite consensus disorder prediction 564 579 - -
Blo12g01054 1246 Gene3D Formin, FH2 domain 832 1207 IPR042201 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g01054 Blo-Chr12:28328199 Blo16g00180 Blo-Chr16:4013756 7.40E-168 dispersed
Blo08g00524 Blo-Chr8:14804557 Blo12g01054 Blo-Chr12:28328199 3.68E-144 transposed
Blo19g00153 Blo-Chr19:5936315 Blo12g01054 Blo-Chr12:28328199 5.64E-136 transposed
Blo12g01054 Blo-Chr12:28328199 Blo17g00002 Blo-Chr17:13808 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01054 - - vri:117912922 1286.55