Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01054 ATGGAGGAAACCAAAAACAAGCCAAAGGAAAATCCTGAGTTGAGGCAGCCATGTTTTCTCTCCACACAAGAGACAGCTAGGAATAGAATCAGATCATTGGATAATCAGACGACGATACGAATGAATCGCCATAGCCGTAATCCTTTTGCGTTTTCCGTTTCCTTTTTCAATTGCTGCTATTCCACTGATGTTTTGGAAGACGAAGAATATAAAGCCTATATAGGAGCCACAGTGGGTCAACTTCGTGAGCATCTCCCTGATGCTTCGTTCATGGTATTCAACTTCCGAGAGGGGGAGAACCAAAGTCAGTTAGCAAATATTCTAGCTGAGCATGACATGATTGTAATGGACTATCCTCGACATTACGAAGGCTGCCCTCTTCTGACCATGGAGATGATCCATCATTTCTTGAGGTCGAGTGAAAGTTGGCTTTCACTTGGGCAACAAAATGTGCTTTTGATGCATTGCGAGCGAGGTGGGTGGCCTGTTTTGGTCTTTATGTTGGCTTCACTCTTGATATATAGGAAGCAGTACAGTGGGGAACAGAAAACTCTTGACATGGTTTACAGGCAGGCACCTAAGGAACTTTTACAGTTGATGACACCTGTCAACCCATTGCCTTCACAGTTGAGGTACCTTCAATATGTATCGAGAAGAAATGTCTCTACAGAATGGCCTCCATTAGATAGGGGGCTTACTTTGGACTGCATCATTATACGATTTATTCCTCATTTGGACGGTGATGGTGGTTTCAGACCAATTTTTAGAATATATGGGCAGGATCCACTTATGGCTAATGATAGGATTCCTAAAGTTTTGTTCTCAACACCAAAAAGAAGCAAGCTCATTCGGTATTTTAAACAGGCAGACTGTGAGCTTGCCAAAATTGACATCCGTTGCCATATCCAAGGAGATGTTGTTCTTGAATGTATAAATTTGGACGAGGATTTGGAACGTGAGGAGATGATATTTCGTGTTATGTTTAATACGGCCTTCATAAGGTCGAATATTTTGATGCTTGGACGAAATGAGATTGATAGTTTATGGAATGCCAAGGATCAGTTCCCTAAGGATTTTAGAACCGAGGTTCTTTTTTCAGAGATGAATCTTGCTACTTCTCTTATTTCAATGGATTTGCCCATTATTGAAGAGAAGGAGGAACTTCCTATTGAAGCATTTGCTAAGGTTCAAGAGATATTTAGCAATATAGATTGGCTAGGTTCAAGAACAGATGAGACGCTAAATTTACTCCAGCGTCTCAAATCTTCAAGTGCACTTCAAGAAAAAATGACTACGACTTCTACTTGCAATTATGAAGCAGGAAACTTGTCGCAGCTAACTCCCAATAAACTTAATTTAGAATCACAGTTATCAGACATAGCTGAAGAAACAGGTAAAGACAAGATCAAATCCTCAGTGTTGCAGATTTCTAGCGAACAAGCTGCACCACTTTCATCTTGTGATTCATCACAAGGGTGTCCTGTTACTTTAGATGTAGATCCTCCTGCACCTCCTGCTTCATTTGTTGAGGCTCCAATCAAGGATCTTGCTACCCTTAATATTAATGAGTTCACACAGCCATTGGCAGTATCTTCACCTACCTCTGCAACTTCAGCACCTGATGTTTTGAATATCACTAAACCAGAAACTGGCAATCTGCACATTATATCTTTGCCGTCGGTTCAGGCCCCTTCAACCATGCCACCTGAACCACCACCTTTCACTGTAGGGCCTTTTGTACCAACTTCGCCATTGATAAGTTCTCCGGCACACGCAGAAGAATCTTTTTCCACCCCATGTCAGTCAGTGCATCATCAACCCAGTTCAGATCAAACACTTTCATCACTAGCTCAACTCCCTCAAAAAACGTTATTTGGTGGAAATCAATCATCAAGTGTTTCTCTTTCTTCTCCATCTCACTCTCTTTCACAGAATTCTCCATCCTTGTCTTCTATGATTTCCACTTCAATTCCGCCTTCCCCTCCTCCTCCCCCGTCCTTTTCTGGCAGATTGCAATCAACCTCTGTGTTTAACTCATTACCAACTTCTCTTCCCCTTACTTCCTCTGTTATTTCAGAAACATCCCAACCTTCTTATGTCAAAAATTCATATTCTGCTCCCCCGCCCCCTCCTCCTCCTCCAGCACCTTCCTCTGCAAAATTGCTATCATCTGCTGCTACGAACTCACTGTCAATTCCCTCTCCTCCTCCACCCCCAGCAATTCCATCTTCAGTTGCCTATCTTTCTCCATCTCAGCTGGAAACAAAAAAAATAACATTTACGCCTTCTCCTCCTCCCCCACCTCCACATTCTGGGCCCATCTTGTCTGTTTCTGTTTTACCTTCAGCGTCACCACCAGCACCACCTCCTCCTGCTCCTCCAGGCAATGCAATGATGAAAGCTCCTTTGCAGTCTATTTCTGGAGCTTCCAAAGCCATACCTGCAATCCCTGGACCGCCATCCAACATTTCTCTCAGTGCAAAGGGCCGGGGCTTAAGCCGTGTGAGTCCCAAAAATCAGAGCCAAAATAAAAGGGCCAATCTGAAGCCATATCATTGGTTGAAGTTAACAAGGGCTATGCATGGAAGTTTATGGGCGGAGGCTCAGAGGGCTGGTGAAGCTACCAAGACACCAGAGTTTGATATGTCAGAACTAGAGAGGCTTTTCTCGGCTACTGTGCCAAATTCAGATCATGGAAACAATGGTGGAAAGTCAAAACGACATGGGTCTAGAGCTAAATCAGACAAAGTTCAATTGATTGAACTGAGGAGAGCATATAACTGTGAGATCATGCTCTCAAAGGTCAAAATTCCTTTGCCTGATTTGATGGGATCAGTTCTTGCCTTGGACGAGTCAGCTTTGAGTGTGGATCAGGTTGAGAACCTCATAAAGTTTTGTCCAACGAAAGAAGAGATGGAACTTCTCAAGGGGTATAGTGGAGATAAAGAAAACTTAGGAAAATGTGAAATTTTCTTTCTAGAATTGATGAAAGTACCACGTGTAGAGTCCAAGCTAAGAGTTTTTTCTTTTAAGATTCAGTTCCAGTTGCAGATCAGGGGTTCGCTCAAGTTGAGAAGAGTGATGCAGACCATTCTTTCTTTGGGTAATGCTTTAAACCAGGGAACTGCAAGAGGATCTGCTATTGGATTTCGACTCGATAGTCTTCTTAAGCTCGCTGATACACGAGCTCGTAACAGTAAGATGACTCTTGTGCATTATCTGTGCAAGGTGCTTTCTGAAAAGCTACCAGAACTTTCAGATTTTTCAAAGGACCTTGAGAATTTGGAGGCTTCAACGAAGATACAATTGAAATACTTGGCTGAAGAAATGCAAGCCATAAGCAAGGGGCTTGAGAAGGTTGTTCAGGAATTGACTTCAGCAGAAAACGACGGACCTGTGTCTGAGTATTTTTGCAAGGCTTTAAAGAATTTCCTTTCTCAGGCTGAGGCTGAAGTGAGGTCTTTAACCTCACTTTATTCTAATGTGGGTAGAAATGCAGATGCATTAGCACTATATTTTGGAGAGGATCCATCCCGTTGCCCATTTGAACAAGTTGTATCTACCTTGTATAGCTTCGTAAAAACTTTTGAGCGAGCGCATGAGGAAAACTGCAAACAGCTTGAATTTGAAAAGAAGAAAATGCAAAAAGAGACAGAAATCGAGAAGCTAAAGACCAGTTTTTCAAGGAATGTGTCTGATAACTCTATACAGATGCCAATAAAAAGTGGTGACATCCATTAA 3741 42.42 MEETKNKPKENPELRQPCFLSTQETARNRIRSLDNQTTIRMNRHSRNPFAFSVSFFNCCYSTDVLEDEEYKAYIGATVGQLREHLPDASFMVFNFREGENQSQLANILAEHDMIVMDYPRHYEGCPLLTMEMIHHFLRSSESWLSLGQQNVLLMHCERGGWPVLVFMLASLLIYRKQYSGEQKTLDMVYRQAPKELLQLMTPVNPLPSQLRYLQYVSRRNVSTEWPPLDRGLTLDCIIIRFIPHLDGDGGFRPIFRIYGQDPLMANDRIPKVLFSTPKRSKLIRYFKQADCELAKIDIRCHIQGDVVLECINLDEDLEREEMIFRVMFNTAFIRSNILMLGRNEIDSLWNAKDQFPKDFRTEVLFSEMNLATSLISMDLPIIEEKEELPIEAFAKVQEIFSNIDWLGSRTDETLNLLQRLKSSSALQEKMTTTSTCNYEAGNLSQLTPNKLNLESQLSDIAEETGKDKIKSSVLQISSEQAAPLSSCDSSQGCPVTLDVDPPAPPASFVEAPIKDLATLNINEFTQPLAVSSPTSATSAPDVLNITKPETGNLHIISLPSVQAPSTMPPEPPPFTVGPFVPTSPLISSPAHAEESFSTPCQSVHHQPSSDQTLSSLAQLPQKTLFGGNQSSSVSLSSPSHSLSQNSPSLSSMISTSIPPSPPPPPSFSGRLQSTSVFNSLPTSLPLTSSVISETSQPSYVKNSYSAPPPPPPPPAPSSAKLLSSAATNSLSIPSPPPPPAIPSSVAYLSPSQLETKKITFTPSPPPPPPHSGPILSVSVLPSASPPAPPPPAPPGNAMMKAPLQSISGASKAIPAIPGPPSNISLSAKGRGLSRVSPKNQSQNKRANLKPYHWLKLTRAMHGSLWAEAQRAGEATKTPEFDMSELERLFSATVPNSDHGNNGGKSKRHGSRAKSDKVQLIELRRAYNCEIMLSKVKIPLPDLMGSVLALDESALSVDQVENLIKFCPTKEEMELLKGYSGDKENLGKCEIFFLELMKVPRVESKLRVFSFKIQFQLQIRGSLKLRRVMQTILSLGNALNQGTARGSAIGFRLDSLLKLADTRARNSKMTLVHYLCKVLSEKLPELSDFSKDLENLEASTKIQLKYLAEEMQAISKGLEKVVQELTSAENDGPVSEYFCKALKNFLSQAEAEVRSLTSLYSNVGRNADALALYFGEDPSRCPFEQVVSTLYSFVKTFERAHEENCKQLEFEKKKMQKETEIEKLKTSFSRNVSDNSIQMPIKSGDIH 1246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28328199 28337365 + BLOR05073 Blo12g01054 68315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01054 1246 ProSiteProfiles Formin homology-2 (FH2) domain profile. 838 1222 IPR015425 -
Blo12g01054 1246 MobiDBLite consensus disorder prediction 782 797 - -
Blo12g01054 1246 Pfam Formin Homology 2 Domain 840 1196 IPR015425 -
Blo12g01054 1246 MobiDBLite consensus disorder prediction 562 673 - -
Blo12g01054 1246 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 87 217 IPR029021 -
Blo12g01054 1246 MobiDBLite consensus disorder prediction 826 844 - -
Blo12g01054 1246 MobiDBLite consensus disorder prediction 698 745 - -
Blo12g01054 1246 Coils Coil 1197 1217 - -
Blo12g01054 1246 MobiDBLite consensus disorder prediction 588 655 - -
Blo12g01054 1246 ProSiteProfiles C2 tensin-type domain profile. 229 368 IPR014020 -
Blo12g01054 1246 SMART it6_source 838 1244 IPR015425 -
Blo12g01054 1246 SUPERFAMILY Formin homology 2 domain (FH2 domain) 915 1225 - -
Blo12g01054 1246 Pfam C2 domain of PTEN tumour-suppressor protein 232 367 IPR014020 -
Blo12g01054 1246 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 232 368 IPR035892 -
Blo12g01054 1246 Gene3D Protein tyrosine phosphatase superfamily 52 229 IPR029021 -
Blo12g01054 1246 MobiDBLite consensus disorder prediction 892 913 - -
Blo12g01054 1246 MobiDBLite consensus disorder prediction 760 774 - -
Blo12g01054 1246 PANTHER FORMIN-J 44 1228 - -
Blo12g01054 1246 SMART PTEN_C2_2 227 367 IPR014020 -
Blo12g01054 1246 MobiDBLite consensus disorder prediction 757 844 - -
Blo12g01054 1246 Gene3D - 230 370 - -
Blo12g01054 1246 MobiDBLite consensus disorder prediction 703 718 - -
Blo12g01054 1246 MobiDBLite consensus disorder prediction 564 579 - -
Blo12g01054 1246 Gene3D Formin, FH2 domain 832 1207 IPR042201 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01054 - - - vri:117912922 1286.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g01054 Blo-Chr12:28328199 Blo16g00180 Blo-Chr16:4013756 7.40E-168 dispersed
Blo08g00524 Blo-Chr8:14804557 Blo12g01054 Blo-Chr12:28328199 3.68E-144 transposed
Blo19g00153 Blo-Chr19:5936315 Blo12g01054 Blo-Chr12:28328199 5.64E-136 transposed
Blo12g01054 Blo-Chr12:28328199 Blo17g00002 Blo-Chr17:13808 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g572 . Blo12g01054 . Bda03g00096 . . . . . . Cma01g01662 . Car09g00362 . . . Cpe06g00297 . . . . . . . Cla05g01683 Cam05g1798 Cec05g1807 Cco05g1867 Clacu05g1785 Cmu05g1671 Cre05g1800 . . Cone17ag0984 Cone20ag0324 Lsi04g02074 . . . . . . . Bpe14g00599 . . Bma02g00008 Sed05g1743 Cmo01g01711 Cmo09g00417 Cma09g00412 . Car01g01277 . . Cpe02g00327 Bhi09g03005 Tan01g3567 Cmetu07g0822 . Hepe01g1968 Mch11g0505 . . . . . . . . . . . Cme07g00118
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo13g00325 . 39 602 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 4.3e-186 648.3
Blo04g01266 . 544 1110 Protein tyrosine phosphatase (PTP) family AT3G50110 59.8 4.6e-180 628.2
Blo06g00279 . 39 430 Protein tyrosine phosphatase (PTP) family AT3G50110 65.1 9.4e-141 497.7
Blo17g00378 . 76 467 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 2.8e-154 542.0
Blo13g00941 . 6 849 Protein tyrosine phosphatase (PTP) family AT3G10550 66.6 0.0e+00 1130.2
Blo13g00941 . 6 851 Protein tyrosine phosphatase (PTP) family AT5G04540 63.1 2.3e-312 1068.1
Blo12g01054 . 56 1219 Protein tyrosine phosphatase (PTP) family AT5G58160 53.0 2.9e-282 968.8
Blo17g00002 . 568 1707 Protein tyrosine phosphatase (PTP) family AT5G58160 52.3 4.2e-281 964.9
Blo16g00180 BCT 113 533 Protein tyrosine phosphatase (PTP) family AT5G58160 62.0 4.3e-137 486.5
Blo16g00179 BCT 710 1079 Protein tyrosine phosphatase (PTP) family AT5G58160 59.2 1.4e-122 438.3
Blo04g00779 BCT 13 187 Protein tyrosine phosphatase (PTP) family AT5G58160 54.9 1.4e-42 172.6
Blo19g00154 . 104 230 Protein tyrosine phosphatase (PTP) family AT5G58160 66.9 1.3e-40 166.0
Blo01g01756 . 89 400 Protein tyrosine phosphatase (PTP) family AT1G71860 66.1 1.1e-122 436.8
Blo06g01155 . 18 910 Protein tyrosine phosphatase (PTP) family AT5G23720 61.2 5.3e-302 1033.9
Blo04g01221 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.7 1.3e-71 266.2
Blo04g00349 BCT 68 349 Protein tyrosine phosphatase (PTP) family AT3G52180 68.8 3.7e-113 404.8
Blo13g00691 BCT 114 387 Protein tyrosine phosphatase (PTP) family AT3G52180 69.0 8.6e-110 393.7
Blo04g00191 . 33 289 Protein tyrosine phosphatase (PTP) family AT3G10940 73.9 4.1e-112 401.4
Blo18g00335 . 137 579 Protein tyrosine phosphatase (PTP) family AT3G01510 71.7 4.6e-198 687.6
Blo02g00060 . 13 274 Protein tyrosine phosphatase (PTP) family AT2G32960 51.9 5.9e-65 244.6
Blo13g00337 BCT 169 350 Protein tyrosine phosphatase (PTP) family AT2G32960 64.6 5.9e-65 244.6
Blo17g00522 . 13 160 Protein tyrosine phosphatase (PTP) family AT2G32960 52.2 5.3e-50 194.9
Blo04g01214 BCT 24 150 Protein tyrosine phosphatase (PTP) family AT2G32960 54.9 1.6e-38 156.8
Blo03g00441 . 55 384 Protein tyrosine phosphatase (PTP) family AT2G35680 55.6 1.8e-98 356.3
Blo01g00533 . 6 265 Protein tyrosine phosphatase (PTP) family AT2G35680 53.0 5.5e-79 291.6
Blo01g00533 . 27 201 Protein tyrosine phosphatase (PTP) family AT5G56610 53.1 4.9e-45 177.9
Blo13g00337 BCT 148 350 Protein tyrosine phosphatase (PTP) family AT4G03960 55.6 2.1e-62 235.7
Blo17g00522 . 9 164 Protein tyrosine phosphatase (PTP) family AT4G03960 58.3 1.4e-53 206.5
Blo04g01214 BCT 25 141 Protein tyrosine phosphatase (PTP) family AT4G03960 64.1 2.3e-40 162.5
Blo17g00522 . 3 193 Protein tyrosine phosphatase (PTP) family AT3G02800 70.7 7.1e-82 300.4
Blo13g00337 BCT 160 347 Protein tyrosine phosphatase (PTP) family AT3G02800 53.7 2.0e-52 202.6
Blo04g00099 BCT 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 63.5 2.9e-59 227.3
Blo13g00894 BCT 5 184 Protein tyrosine phosphatase (PTP) family AT3G55270 65.4 6.6e-59 226.1
Blo17g00378 . 76 467 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 2.8e-154 542.0
Blo13g00325 . 29 602 Protein tyrosine phosphatase (PTP) family AT3G19420 68.5 1.2e-228 789.6
Blo04g01266 . 533 1110 Protein tyrosine phosphatase (PTP) family AT3G19420 68.0 2.7e-225 778.5
Blo06g00279 . 31 430 Protein tyrosine phosphatase (PTP) family AT3G19420 62.5 6.5e-147 518.1
Blo13g00325 . 39 602 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 4.3e-186 648.3
Blo04g01266 . 544 1110 Protein tyrosine phosphatase (PTP) family AT3G50110 59.8 4.6e-180 628.2
Blo06g00279 . 39 430 Protein tyrosine phosphatase (PTP) family AT3G50110 65.1 9.4e-141 497.7
Blo12g01054 . 56 1219 Protein tyrosine phosphatase (PTP) family AT5G58160 53.0 2.9e-282 968.8
Blo17g00002 . 568 1707 Protein tyrosine phosphatase (PTP) family AT5G58160 52.3 4.2e-281 964.9
Blo16g00180 BCT 113 533 Protein tyrosine phosphatase (PTP) family AT5G58160 62.0 4.3e-137 486.5
Blo16g00179 BCT 710 1079 Protein tyrosine phosphatase (PTP) family AT5G58160 59.2 1.4e-122 438.3
Blo04g00779 BCT 13 187 Protein tyrosine phosphatase (PTP) family AT5G58160 54.9 1.4e-42 172.6
Blo19g00154 . 104 230 Protein tyrosine phosphatase (PTP) family AT5G58160 66.9 1.3e-40 166.0
Blo13g00941 . 6 849 Protein tyrosine phosphatase (PTP) family AT3G10550 66.6 0.0e+00 1130.2
Blo13g00941 . 6 851 Protein tyrosine phosphatase (PTP) family AT5G04540 63.1 2.3e-312 1068.1
Blo03g00118 . 19 317 Protein tyrosine phosphatase (PTP) family AT2G35320 61.0 8.7e-108 387.1
Blo07g01154 . 1 657 Protein tyrosine phosphatase (PTP) family AT3G09100 70.5 1.9e-285 978.4
Blo07g01154 . 1 657 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 2.0e-258 888.6
Blo07g01154 . 83 664 Protein tyrosine phosphatase (PTP) family AT5G28210 57.7 2.5e-186 649.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004653 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g01054 Blo_Chr12 FPKM 2.808032 3.047124 2.815775 2.444389 2.306829 2.209286 4.310326 2.927157 2.960543 3.30913