Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01057 ATGAGTAGTCTGGTTGAGAGACTCCGGGTTAGATCAGAACGAAGGCCAATTTACAATCTTGATGAATCAGATGATGATATTGATGATAAACTTGGCAAACCTAGAATTGATGTGGAGAACTTTGAAAGACTAGTGAGGAGTGATGCGAAAGAAGATTCTTGCCAAGCCTGTGGAGAAAGTGGGAGTCTTCACAGCTGTCAAACATGCACGTACTCTTACCATCCTAAGTGTGTTCTTCCTCCTATGAAAACTCCTCTTCCTGACAAGTGGAGGTGCCCTGAATGTATTAGCCCTTTAAATGATATAGAGAAGATACTAGATTGTGAAATGCGTCCTACTTTAGCTGGTGATAGTGATGCATCAAAGCTTGGAATGAAGCAAATTTTTGTGAAACAATATCTTGTAAAATGGAAGGGATTATCTTATCTGCATTGCTCATGGGTGCTGGAGAAAGAATTCATAAAAGCGTTCAAGACACATCCTCGTCTGAAGACTAAATTTAACAATTTTAATCGTCAAATGGCATCTCACAACAATGCAGAAGAAGATTTTGTGGCTATTCGACCTGAATGGACTACCGTAGATCGGATACTTGCTTGCAGGGGAGACGAAAATGACAAGGAATATCTTGTGAAGTGGAAAGAACTTTCTTATGATGAATGCTATTGGGAATTTGATTCCGACATTTCTGCATTTCAACCAGAAATAGATAAATTCAACAGTATACACTCCAAGTCCCGCAAACTGTCTTCTAGTAAGCAAAGAGGCAGCTTTAAAGATATTATTGAAGCAAAAAAGCAGCAGAAAGACTTTCAGCAATATGAACATAGTCCTGATTTTCTTCGAGGTACACTACATCCTTATCAGCTTGAAGGGTTAAATTTCTTGCGCTTTTCTTGGTTGAACCAAACCCATGTGATACTTGCTGATGAAATGGGGCTAGGAAAAACAATACAAAGTATTGCTTTTTTGGCTGCTCTTTTTGAAAAGAGTGTTTTCCCACATTTGGTGATTGCTCCACTTTCCACTCTGCGAAATTGGGAACGTGAATTTGCCACATGGGCTCCCCAAATGAATGTTGTTATGTATGTTGGCTCTTCCCAAGCTCGTGCTGTTATAAGGGAATATGAATTTTATTTTCCAAAAAATCATAAGAAGATAAAGAAAAAGAAGTTGGGTCAAGTTGTTCACGAGAGCAAACAAGAGAGAATCAAATTTGATGTTTTGCTAACGTCATATGAAATGATTAATTTTGATGCGGCAACACTGAAGCCAATAAGATGGGAGTGCATGATTGTTGATGAAGGTCATCGTCTTAAGAATAAAGACTCAAAATTGTTTTCTTCATTGAAGCAGTTCTCAAGTAGCCATCGTGTGCTCTTGACTGGAACTCCACTGCAGAACAATTTGGATGAACTTTTTATGCTCATGCACTTCCTTGATGCTGGAAAGTTTGGAAGTTTAGAGGAGTTCCAGGACGAGTATAAGGATATTAATCAAGAAGAGCAGATCTCAAGGCTTCATAAAATGTTGGCTCCTCATCTCCTGAGAAGAGTCAAGAAAGACGTCATGAAGGACCTACCTCCTAAAAAAGAGCTCATTTTACGTGTTGACTTAAGTGGCAAGCAGAAAGAATACTACAAAGCTATTTTAACTCGTAATTATCAGATACTAACTAGGCGTGGTGGCGCGCAAATTTCTCTCATCAATGTGGTTATGGAACTGCGGAAACTATGTTGTCATGCTTATATGTTAGAAGGAGTTGAGCCAGACATAGAAGATCCCAATGAATCTTTTAAACAGCTCTTGGAAACCTCTGGAAAGTTGCAATTGTTGGATAAGATGATGGTCAGACTTAGAGAACAAGGGCATAGAGTTCTTATATATTCGCAATTTCAGCACATGCTTGACTTGCTTGAAGATTACTGTACTTACAAGAAATGGCAGTATGAGCGGATTGATGGAAAGGTTGGAGGTGCTGAAAGACAAATTCGGATAGATCGATTCAATGCTAAAAATTCTTCCCGCTTTTGCTTTCTTCTCTCTACTAGAGCCGGGGGCTTGGGAATAAACCTTGCTACTGCCGACACAGTTATCATATATGATAGTGACTGGAATCCCCATGCTGATTTACAAGCTATGGCTAGAGCTCATCGACTCGGCCAGACTAATAAAAATGGTTTAATATTCCAGGTAATGATTTTTAGACTTGTCACACGAGGAACCATTGAAGAAAGGATGATGCAAATGACAAAGAAGAAGATGGTGTTAGAGCATTTGGTAGTTGGAAGACTAAAGGCTCAAAATATAAATCAGATTGAAACATTTTCTTTGCAAGCTTGTATGATGAAAAAAGAAGAGTTAGATGACATTATAAGGTATGGGTCAAAGGAATTATTCGCTGATGAGAATGATGAAGCAGGGAAGTCTCGCCAAATTCATTATGATGATGCTGCGATTGATAGGTTTGGTGTAGGAGATTTTGATTGGAAAGAGTTTACTTCTCGCATGAAGCAGAAGACATATGAAGAAATAAAAGATTATGGAACTCTCTTCTTGTCTCATATTGCTGAAGATGTAACAGAATCTCCCAACTTTTCAGATGGTGTTCCCAAAGAAGGACTTAGAATTCAAGATGTATTAGTCAGGATTGCAGTTTTACTTCTGATCAGAGATAAAGTAAAGTATGCTTTGGAAAATCCGAGTGCTCCCCATTTTCCAGATGACATTGTGTCACGCTATCCAGGATTGAAAGGTGGAAAACATTGGAAAGAGGAGCATGACAAATTATTATTGCACACTGTACTGAAACATGGTTATGGTAGATGGCAAGCTATTATTGATGATAAAGAGTTGAGAATTCAGGAAGTCATTTGTCAAGAGTTGAATCTCCCCTTCATAAATCTCTCTGTTCCTGGACAAGGTTTATCCCAAGCACATAATGGTGGCAGCGCAGCTAATATCTACTCTTCAGCAAACGAATCTAAGGAAAATGGTTGCAGTAATGAAGGAGCCGGTGATGTTCCACAAGGAACAGCTGATTCTTCTGTGTTGTATCGATTTAGAGATATGCAGAGAAGACAGGTGGAGTTTATCAAGAAAAGGGTACTTCTCTTGGAAAAAGGCCTCAATGCAGAGTACCAAAAAGAATACTTCGGTGACTCCAAACCAGATGAGATTCCAATTGAAGAGATTGAGACTGAATCTAAGGCCGCAAATTTGTCTAATTCCAGATCCATAGGGAATGATATTCCAAAGATGGATCAATTGCCTCAGATGGAACCAATTGCTTCAGAAGAAATTTCCTCCGCTGCTTGTGATGACAATTCTGATAAACTGGAATTGGGCAGTCTTTATAATGAGATGTGTAATGTTTTGGAGGAATCTTCGAAGGGGGGGGACTCATCATCGAATCCCAATTTGAAAAAGACTCTTCGTCCTCTGGAAACAATTTGTGAAAACATTAGCCAAATTCTATCTCCTTTGTCCGAACTGAAATCAAATTCTACCCATTTGACATCAAGTTCAGGTCAGCAAAAACAAATCGAGTCACCAAACAACGACGATAACACAAAATTGCCAGCATCGTTCACCAATCAAGATGAAGGGAAGCAAGCTCCTGTGGACATAGAAATGGCAGACGCCGAAAAGAATGCCGAAGCCCAAAAAGAAAAAGACGAGTCAACGCAAATGGAGAGCGACCCAGAAGAAGAGGAAAGCAAAATATCTACCTCCACTCCAGCTTCTGCAGAAGCATCTCCTGCACCTGCTCAGCCAGAGCCGATAGTTCTAGATGAAATTAGTGAAATGGAAGAAGATGGAAAGAAGAATGAAGCTTTGGAGATTGGAAGCCTAGAGAAATTGAGTTCAGGGGTGATCATCTTGGATGATGATTAA 3897 39.47 MSSLVERLRVRSERRPIYNLDESDDDIDDKLGKPRIDVENFERLVRSDAKEDSCQACGESGSLHSCQTCTYSYHPKCVLPPMKTPLPDKWRCPECISPLNDIEKILDCEMRPTLAGDSDASKLGMKQIFVKQYLVKWKGLSYLHCSWVLEKEFIKAFKTHPRLKTKFNNFNRQMASHNNAEEDFVAIRPEWTTVDRILACRGDENDKEYLVKWKELSYDECYWEFDSDISAFQPEIDKFNSIHSKSRKLSSSKQRGSFKDIIEAKKQQKDFQQYEHSPDFLRGTLHPYQLEGLNFLRFSWLNQTHVILADEMGLGKTIQSIAFLAALFEKSVFPHLVIAPLSTLRNWEREFATWAPQMNVVMYVGSSQARAVIREYEFYFPKNHKKIKKKKLGQVVHESKQERIKFDVLLTSYEMINFDAATLKPIRWECMIVDEGHRLKNKDSKLFSSLKQFSSSHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQDEYKDINQEEQISRLHKMLAPHLLRRVKKDVMKDLPPKKELILRVDLSGKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHAYMLEGVEPDIEDPNESFKQLLETSGKLQLLDKMMVRLREQGHRVLIYSQFQHMLDLLEDYCTYKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKNGLIFQVMIFRLVTRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQIETFSLQACMMKKEELDDIIRYGSKELFADENDEAGKSRQIHYDDAAIDRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDVTESPNFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKYALENPSAPHFPDDIVSRYPGLKGGKHWKEEHDKLLLHTVLKHGYGRWQAIIDDKELRIQEVICQELNLPFINLSVPGQGLSQAHNGGSAANIYSSANESKENGCSNEGAGDVPQGTADSSVLYRFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDSKPDEIPIEEIETESKAANLSNSRSIGNDIPKMDQLPQMEPIASEEISSAACDDNSDKLELGSLYNEMCNVLEESSKGGDSSSNPNLKKTLRPLETICENISQILSPLSELKSNSTHLTSSSGQQKQIESPNNDDNTKLPASFTNQDEGKQAPVDIEMADAEKNAEAQKEKDESTQMESDPEEEESKISTSTPASAEASPAPAQPEPIVLDEISEMEEDGKKNEALEIGSLEKLSSGVIILDDD 1298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28372742 28385345 + BLOR05076 Blo12g01057 68318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01057 1298 CDD SF2_C_SNF 606 738 - -
Blo12g01057 1298 CDD CD2_tandem 190 239 - -
Blo12g01057 1298 Gene3D - 282 527 IPR038718 -
Blo12g01057 1298 Pfam SNF2-related domain 306 584 IPR000330 GO:0005524|GO:0140658
Blo12g01057 1298 SUPERFAMILY Chromo domain-like 182 241 IPR016197 -
Blo12g01057 1298 SMART helicmild6 637 721 IPR001650 -
Blo12g01057 1298 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 9 822 - -
Blo12g01057 1298 Gene3D - 528 758 IPR027417 -
Blo12g01057 1298 MobiDBLite consensus disorder prediction 1166 1279 - -
Blo12g01057 1298 SMART PHD_3 53 96 IPR001965 -
Blo12g01057 1298 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 611 789 IPR001650 -
Blo12g01057 1298 SUPERFAMILY Chromo domain-like 66 173 IPR016197 -
Blo12g01057 1298 CDD CD1_tandem 98 170 - -
Blo12g01057 1298 ProSiteProfiles Chromo and chromo shadow domain profile. 192 239 IPR000953 -
Blo12g01057 1298 SMART DUF1086_2 786 911 IPR009462 GO:0003677|GO:0006338
Blo12g01057 1298 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Blo12g01057 1298 MobiDBLite consensus disorder prediction 1207 1241 - -
Blo12g01057 1298 SMART chromo_7 190 244 IPR000953 -
Blo12g01057 1298 SMART chromo_7 99 162 IPR000953 -
Blo12g01057 1298 Coils Coil 1212 1232 - -
Blo12g01057 1298 Gene3D - 878 1049 - -
Blo12g01057 1298 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED 822 1146 - -
Blo12g01057 1298 SMART ultradead3 281 491 IPR014001 -
Blo12g01057 1298 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 241 IPR023780 -
Blo12g01057 1298 Pfam Chromo (CHRromatin Organisation MOdifier) domain 102 156 IPR023780 -
Blo12g01057 1298 MobiDBLite consensus disorder prediction 1166 1203 - -
Blo12g01057 1298 Pfam CHD subfamily II, SANT-like domain 819 908 IPR009462 GO:0003677|GO:0006338
Blo12g01057 1298 Pfam Helicase conserved C-terminal domain 608 721 IPR001650 -
Blo12g01057 1298 Gene3D - 100 175 - -
Blo12g01057 1298 ProSiteProfiles Chromo and chromo shadow domain profile. 100 179 IPR000953 -
Blo12g01057 1298 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED 9 822 - -
Blo12g01057 1298 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 518 IPR027417 -
Blo12g01057 1298 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 520 794 IPR027417 -
Blo12g01057 1298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 99 IPR013083 -
Blo12g01057 1298 Gene3D - 178 241 - -
Blo12g01057 1298 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 822 1146 - -
Blo12g01057 1298 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 297 483 IPR014001 -
Blo12g01057 1298 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01057 K11643 CHD4, MI2B; chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-] - vvi:100261114 1390.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g01057 Blo-Chr12:28372742 Blo14g00419 Blo-Chr14:4682875 9.78E-166 dispersed
Blo12g01057 Blo-Chr12:28372742 Blo08g00123 Blo-Chr8:1294520 1.18E-163 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g5 . Blo12g01057 . Bda03g00159 . . . . Cmo05g00120 . . . . Car12g00229 Sed09g1609 Cpe07g00209 . Bhi04g00862 Tan02g2553 Cmetu03g1333 . Hepe10g0373 . Lcy13g1421 . . . . . . . . Cone7ag1308 . . . . . . . . . . . Bpe04g00141 . . . . . . Cma12g00246 . . . . Bhi09g02568 . . . Hepe01g2213 Mch11g0761 . Cla08g01215 Cam08g1676 Cec08g1254 Cco08g1373 Clacu08g1374 . Cre08g1159 . Csa02g02262 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009048 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13094 PF00176 SNF2_N 3.60E-66 CL0023 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g01057 Blo_Chr12 FPKM 4.236422 3.300482 2.322228 2.981686 2.565293 1.643235 3.338864 1.177845 2.834953 1.980181