Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01065 ATGGCCTACCGCAACCTTCTCTCCCAAGACCTTCCTCTCCAACCCCAGCAGCAACAGAACCAACCTTTATTTGACAATTCCTCGCGCACCATTTTGCCTGATCAGTTGACCGCCCACTCTTCGCCGGCCCCGACCTCCAAGTCTCACCACCGCCACCACCACCACCAGCAGCCACTTCAGACGGCCCCTAACTGGCTAAACAACGCACTCCTTCACACCCAAAACCCTCACTCCCACTTCTCTACCGACACCACCTCCAATACCAATTTTCTCAACCTCCATTCCACTGCATCCGATTCCCCCGCTTCTCACTCCTCCAACCAGTGGCTCTCCCGCTCCATCCTTCACCGCAACCACAGCGACGTCATCTACGAAGCTGGGGAAGCCTCAATCGGCCCATCTGCTGTAACACCATCACCCGAATCGACTGAGTTGAATAACAATGCAAACAGCCGCGAAGTTTTGAACAAGAGCGATGGGGCACGGGTGGAAGCAAGCGGCGACGGAAGTGGCGGAGAAGGGTTTGTGAACTGGCAGAATGCGAGGTATAAGGCTGAGATTCTGGCTCATCCACTTTACGAGCAGCTTCTTTCAGCCAGCGTTGCCTGTCTTCGAATTGCAACTCCCGTCAATCAGTTGGCGAGGATCGATGCACAGCTCGCTCAGTCTCAGAACGTAGTGACCAAATACTCGGCCTTGTCCCATGGTCCTCGGTCCATGGTGGGGGATGAGAAAGAGCTTGATCAGTTTATGATTCGGTTGACTGAATGCTACTTACGAAGTCAGAGAGAAATTATGTTTCTTTCTAGTCTCCGATTCACATTTTTTTGCTTGTTCTTCGAGAATTTTCCCATCTTGATTCAAACTCACGCTCATTACGTTCTACTGCTTTGTTCCTTCAAAGATCAACTCCAACAACACGTTCGCGTTCATGCCATGGAAGCAGTGATGGCTTGTTGGGACATGGGTCAATCCCTTCAAAGCTTAACAGGAGTATCCCCATGTGAAGAAGGTACAGGCGCTACAATGTCTGACGATGACGACTACGACGCCAATTTGTATGATGGGAGTATGGATGGTCATGATACCATGGGGTATGGTCCTCTTGTCCCTACAGAAAGTGAAAGATCCTTAATGGAGAGGGTCAGGAAAGAATTGAAGCATGAACTAAAGACGGGTTACAAGGATACAATCGTTGATATAAGAGAGGAAATTTTGCGTAAGAGAAGAGCCGGTAAGCTTCCCGGAGACACCACTTCGGTGTTAAAAGCATGGTGGCAATCACATGCGAAATGGCCATATCCCACGGAGGAAGACAAGGTGAGATTGGTGCAGGAAACGGGGCTGCAGTTGAAGCAGATAAATAACTGGTTCATCAATCAGAGGAAGAGGAACTGGCACAATAATCCTTCAACTTCTACAACCTTGAAGAGTAAACGCAGAAGGTAA 1449 49.55 MAYRNLLSQDLPLQPQQQQNQPLFDNSSRTILPDQLTAHSSPAPTSKSHHRHHHHQQPLQTAPNWLNNALLHTQNPHSHFSTDTTSNTNFLNLHSTASDSPASHSSNQWLSRSILHRNHSDVIYEAGEASIGPSAVTPSPESTELNNNANSREVLNKSDGARVEASGDGSGGEGFVNWQNARYKAEILAHPLYEQLLSASVACLRIATPVNQLARIDAQLAQSQNVVTKYSALSHGPRSMVGDEKELDQFMIRLTECYLRSQREIMFLSSLRFTFFCLFFENFPILIQTHAHYVLLLCSFKDQLQQHVRVHAMEAVMACWDMGQSLQSLTGVSPCEEGTGATMSDDDDYDANLYDGSMDGHDTMGYGPLVPTESERSLMERVRKELKHELKTGYKDTIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHAKWPYPTEEDKVRLVQETGLQLKQINNWFINQRKRNWHNNPSTSTTLKSKRRR 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28422696 28424692 + BLOR05084 Blo12g01065 68326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01065 482 SUPERFAMILY Homeodomain-like 407 471 IPR009057 -
Blo12g01065 482 SMART HOX_1 407 472 IPR001356 GO:0003677
Blo12g01065 482 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 288 482 - -
Blo12g01065 482 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 50 252 - -
Blo12g01065 482 Pfam KNOX2 domain 291 330 IPR005541 GO:0003677|GO:0005634
Blo12g01065 482 Pfam Homeobox KN domain 425 464 IPR008422 GO:0003677|GO:0006355
Blo12g01065 482 ProSiteProfiles ELK domain profile. 385 405 IPR005539 GO:0003677
Blo12g01065 482 SMART ELK_2 385 406 IPR005539 GO:0003677
Blo12g01065 482 SMART KNOX2_2 237 331 IPR005541 GO:0003677|GO:0005634
Blo12g01065 482 MobiDBLite consensus disorder prediction 9 44 - -
Blo12g01065 482 ProSiteProfiles 'Homeobox' domain profile. 405 468 IPR001356 GO:0003677
Blo12g01065 482 Gene3D - 406 468 - -
Blo12g01065 482 MobiDBLite consensus disorder prediction 1 59 - -
Blo12g01065 482 SMART KNOX1_2 181 225 IPR005540 GO:0003677|GO:0005634
Blo12g01065 482 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 288 482 - -
Blo12g01065 482 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 50 252 - -
Blo12g01065 482 Pfam KNOX1 domain 183 224 IPR005540 GO:0003677|GO:0005634
Blo12g01065 482 CDD homeodomain 408 469 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00378 Blo-Chr3:8848352 Blo12g01065 Blo-Chr12:28422696 5.75E-18 dispersed
Blo12g01065 Blo-Chr12:28422696 Blo19g00301 Blo-Chr19:19356768 8.75E-88 dispersed
Blo16g01165 Blo-Chr16:40199397 Blo12g01065 Blo-Chr12:28422696 1.81E-22 dispersed
Blo01g01400 Blo-Chr1:52435054 Blo12g01065 Blo-Chr12:28422696 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13095 PF03790 KNOX1 1.60E-15 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01065 - - csv:101217292 629.787