Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01070 ATGTCCTTCTTCGCCGCCGTTATTCTCGGAATCGCTGTTGGCATCGGATTTATCGTTGGTTTGGCTCGCTCAGAGAGCGCGCGATCCAAGCGTCGTTCTGATTTGGCTAAAACGGTGGCTGCATTTGCGAGGATGACAGTGCAAGATTCGAGAAAAATTCTCCCGCCAGAGTTTTATCCATCCTGGGTTGTTTTCACCCAGCGACAAAAGTTAACTTGGCTGAATCTCCAACTTGACAAGATTTGGCCTTACGTTGATGAGGCAGCGTCCGAGCTTATAAGAAGCAATGTGGAACCAATTCTTGAACAATACAGACCCGGTGTCCTGTCGTCTCTAAAGTTCTCCAAGTTCACCCTTGGTACTGTGGCTCCACAATTTACAGGAGCTTGCATTGTTGAGGATGAAACAAATGCTGGCGGAGTTACCTTGGAATTGGAGATGCAGTGGGATGGAAACCCCAGTATAATACTTGACATAAAAACCAAATTAGGAGTGGGACTTCCTGTACAGGTAAAAGACATTGGATTCACAGGTGTTTTCAGGTTAATCTTCAAGCCTCTAGTTGAAGAGTTGCCTTGTTTTGGAGCTGTTTCTTATTCATTGAGAGAAAAGAAAAAGCTGGATTTTACTCTCAAAGTTGTTGGTGGAGATATATCAGCTATCCCAGGGATTTCTGATGCTATTGAGGAAACAATTCGAGATGCCATTGAAGATAGCATAACATGGCCAGTCAGGAAAATTGTGCCAATATTGCCAGGAGATTACAGTGACCTAGAGCTGAAGCCCGCTGGAACTTTGCAAGTGAAGCTAGTGCAAGCCAAGGACTTAACAAACAAAGATCTTATTGGAAAGTCAGATCCTTTTGCTGTTTTATTTGTGCGACCACTGCGCGACAGAATGAAAACCAGTAAAACCATTAACAATCAGTTGAATCCAATATGGAATGAGCACTTTGAGTTTACTGTTGAAGATGCAGCCACTCAACACCTGACCGTGAGAATATTTGACGATGAGGGAATTCAAGCTGCCGAGTTAATTGGCTGCGTTCAAGTCTCCCTGAGAGAGCTTGAACCTGGAAAAGTGAAGGACGTGTGGTTGAAGCTGGTCAAAGACTTACAGGTCCAGAGAGACACTAAATACAGGGGTCAGGTTCATTTGGAGCTACTATACTCGCCTATTGGCTCAAAGAGTAGCTATACAATTCCATATAATCCGAATTTGCTAACATCAGTGGAAAAGAAAATGGAAGGCAGCAATAAAGAAGAGACGATGGATCGAGGAAAGCCTTCTTCTCCGAAGAAGAGGGATGTGATTGTGAGAGGAGTGTTATCAGTGACAGTAATAGCAGCTGAAGATCTGGCAGCGGTAGATTTCATGGGAAAGGCTGACCCCTACGTTGTCCTTTTAATGAAGAAGAGCGAGACAAAAGTCAAAACAAGGGTAGTACACGACACGCTCAATCCGGTCTGGAACCAGACATTCGACTTTGTAGTGGAAGATGCAATGCATGAGATGTTAATGGTGGAAGTCTGGGATCACGACACTTTCAAAAAGGGAATTTTTACAGATTATAAGCAACCATTTGCAATAACATATCTAGGAGCTTCTCTTATGGTAGTTTACCTTCCAATAGCGTTCCTCAAGGATTGGTTTTGTAATTTGATAAATCGCCGGTCTTCTAGAAGTGGTAGAAACTCTGAAAGCACAAATGAGTCTTATGCTGGATTTAATTCTCCTTCAAAATACTATGGAGGGCAGAAAAGCTTAGAGCTGGAAATGCAGGGGAATTTGACCAGAAAAGACAGTGAAGCAGATCTTTCACCTCTTGAAGAAGAGAGGCCTTTAGTCTCTAGGCATAAAGATGATACACAACTGCAGAAACAAGGAAAAGAACTTTCGGCGAGAGAAGTTGCCACTTATGGGTTTTACATTGCTCCAATCTGGTTTGTAACGGAGTATTTGTCAAATGCTGCGCTTGCACGAACGAGTGTTGCAAGTACTACAGTTCTATCCTCTACGTCTGGCCTTTTTACTCTCTTTATTGGTGCATTTCTGGGCCAAGATTCATTAAATGTAGCAAAAGTGGTTGCTGTGTTTGTCAGCATGGCTGGTGTGGCCATGACAACTCTAGGAAAAACTTGGGCTGCTGATGACTCACAATCAAATGCTTCCCTTAGTGGCAAACGCTCTCTCGTTGGAGATCTCTTTGGCCTTCTTTCAGCTGTGTCATACGGTTTGTTTACCGTGCTGCTTAAAAAATTTGCCGGGGAGGAAGGTGAAAGAGTCGATGTACAAAAGTTGTTTGGTTACATTGGATTGTTTACACTCGTGGCTCTTTGGTGGCTAGTTTGGCCATTGACAGCCTTGGGAATCGAACCCAAATTTACCATTCCTCACTCTGTTAAAATGGATGAAGTCGTTCTGGCAAATGGCTTCGTTGGAAGCGTGCTCTCAGATTACTTCTGGGCGCTTTGTGTTGTTTGGACGACGCCTCTAGTGGCCACACTGGGGATGTCCCTCACCATACCTCTTGCCATGGTCGCTGATATGCTCATCCATGGCCGCCATTACTCTGCTGTCTACATTCTTGGCTCAGCCCAGGTATTTGCAGGATTTGTAATTGCCAATCTCTCGGACTGGTTCTCGAAAAAGCTGGGATTGTAG 2664 44.11 MSFFAAVILGIAVGIGFIVGLARSESARSKRRSDLAKTVAAFARMTVQDSRKILPPEFYPSWVVFTQRQKLTWLNLQLDKIWPYVDEAASELIRSNVEPILEQYRPGVLSSLKFSKFTLGTVAPQFTGACIVEDETNAGGVTLELEMQWDGNPSIILDIKTKLGVGLPVQVKDIGFTGVFRLIFKPLVEELPCFGAVSYSLREKKKLDFTLKVVGGDISAIPGISDAIEETIRDAIEDSITWPVRKIVPILPGDYSDLELKPAGTLQVKLVQAKDLTNKDLIGKSDPFAVLFVRPLRDRMKTSKTINNQLNPIWNEHFEFTVEDAATQHLTVRIFDDEGIQAAELIGCVQVSLRELEPGKVKDVWLKLVKDLQVQRDTKYRGQVHLELLYSPIGSKSSYTIPYNPNLLTSVEKKMEGSNKEETMDRGKPSSPKKRDVIVRGVLSVTVIAAEDLAAVDFMGKADPYVVLLMKKSETKVKTRVVHDTLNPVWNQTFDFVVEDAMHEMLMVEVWDHDTFKKGIFTDYKQPFAITYLGASLMVVYLPIAFLKDWFCNLINRRSSRSGRNSESTNESYAGFNSPSKYYGGQKSLELEMQGNLTRKDSEADLSPLEEERPLVSRHKDDTQLQKQGKELSAREVATYGFYIAPIWFVTEYLSNAALARTSVASTTVLSSTSGLFTLFIGAFLGQDSLNVAKVVAVFVSMAGVAMTTLGKTWAADDSQSNASLSGKRSLVGDLFGLLSAVSYGLFTVLLKKFAGEEGERVDVQKLFGYIGLFTLVALWWLVWPLTALGIEPKFTIPHSVKMDEVVLANGFVGSVLSDYFWALCVVWTTPLVATLGMSLTIPLAMVADMLIHGRHYSAVYILGSAQVFAGFVIANLSDWFSKKLGL 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28440393 28448000 - BLOR05089 Blo12g01070 68331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01070 887 PRINTS C2 domain signature 458 470 IPR000008 -
Blo12g01070 887 PRINTS C2 domain signature 506 514 IPR000008 -
Blo12g01070 887 PRINTS C2 domain signature 484 497 IPR000008 -
Blo12g01070 887 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 262 393 IPR035892 -
Blo12g01070 887 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 519 IPR045050 GO:0008289
Blo12g01070 887 ProSiteProfiles C2 domain profile. 245 366 IPR000008 -
Blo12g01070 887 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 70 250 IPR039010 -
Blo12g01070 887 Pfam C2 domain 441 518 IPR000008 -
Blo12g01070 887 Pfam C2 domain 264 368 IPR000008 -
Blo12g01070 887 MobiDBLite consensus disorder prediction 601 628 - -
Blo12g01070 887 CDD C2 266 368 - -
Blo12g01070 887 PANTHER SYNAPTOTAGMIN-4 1 519 - -
Blo12g01070 887 SMART C2_3c 265 365 IPR000008 -
Blo12g01070 887 SMART C2_3c 442 547 IPR000008 -
Blo12g01070 887 SUPERFAMILY Multidrug resistance efflux transporter EmrE 635 712 - -
Blo12g01070 887 Gene3D C2 domain 257 392 IPR035892 -
Blo12g01070 887 ProSiteProfiles C2 domain profile. 423 551 IPR000008 -
Blo12g01070 887 MobiDBLite consensus disorder prediction 414 433 - -
Blo12g01070 887 Pfam EamA-like transporter family 630 709 IPR000620 GO:0016020|GO:0016021
Blo12g01070 887 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 251 IPR031468 GO:0008289
Blo12g01070 887 SUPERFAMILY Multidrug resistance efflux transporter EmrE 772 880 - -
Blo12g01070 887 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 377 519 IPR035892 -
Blo12g01070 887 CDD C2 443 521 - -
Blo12g01070 887 Gene3D C2 domain 439 528 IPR035892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01070 - - - csv:101210249 827.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00613 Blo-Chr1:6772530 Blo12g01070 Blo-Chr12:28440393 1.84E-11 dispersed
Blo10g00362 Blo-Chr10:5667010 Blo12g01070 Blo-Chr12:28440393 8.12E-06 dispersed
Blo12g00312 Blo-Chr12:18396984 Blo12g01070 Blo-Chr12:28440393 2.81E-14 dispersed
Blo12g01043 Blo-Chr12:28264295 Blo12g01070 Blo-Chr12:28440393 1.79E-112 dispersed
Blo12g01070 Blo-Chr12:28440393 Blo16g00888 Blo-Chr16:36543367 1.45E-12 dispersed
Blo05g00439 Blo-Chr5:5932954 Blo12g01070 Blo-Chr12:28440393 1.05E-30 transposed
Blo08g00400 Blo-Chr8:7300946 Blo12g01070 Blo-Chr12:28440393 1.57E-123 transposed
Blo01g01395 Blo-Chr1:52306999 Blo12g01070 Blo-Chr12:28440393 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g506 . Blo12g01070 . . . . Bma04g00074 . . . Cma01g01516 . Car09g00389 . . . Cpe06g00325 . . . . . . . Cla05g01721 . Cec05g1847 Cco05g1905 Clacu05g1821 Cmu05g1705 Cre05g1836 Cone4ag1772 . . . Lsi04g02114 Csa03g04318 Chy04g00382 . . . . . . Bpe04g00063 . . Sed13g2010 Cmo01g01569 Cmo09g00449 Cma09g00440 . . . . Cpe02g00441 Bhi09g02220 Tan01g3623 Cmetu04g2724 . Hepe01g2006 Mch11g0542 . . . . . . . . . . . Cme04g00428
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001676 3 3 3 2 3 2 4 2 2 2 2 2 3 2 2 4 2 3 3 2 2 1 2 2 2 2 2 2 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g01070 Blo_Chr12 FPKM 36.537102 39.760822 60.39814 58.028126 16.891972 15.887403 16.665136 84.906921 77.832466 78.815193