Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01072 ATGGAAGAAGTTTGTCTTATTACCGACCCTGTTTTTGACAAAGGAGATAAGGATGAAGTTGAAGTGGATGGTTGCCACTTGGGGGAATTCGATGGTGATTCTGGAGAAGCACAGTCGAAATTGAACACTTCATCACCCACTGTGGGTTTGGAATTCAATTCTTTTGATGAAGCTTATGATTTTTACAATATTTATGCTAAAGAACAGGGTTTTGGTATCAGAGTTAGCAATTCATGGTTTAGATCGAAGAGAAAAGAGCGGTATAGAGCCAAACTTAGTTGCAGTAGTGCAGGTTTCAAGAAAAAGAGCGAAGCCAACAATCCGAGGCCAGAAACGAGAACTGGTTGTCCAGCAATGATAATACTTCGGCTGGTGGGCTCCAAAAAGTGGAGAATAATCGAAGTTGAGCTTGGACATAACCATCCAGTGAGTCCACAAATCAAAAGATTTTACAAATCACACAAAAAGATGATTCTTGCTGCCAAACAAGCACATCCTCCATTGCAGCCGGTCACAGAAGTACATACCATCAAGCTGTACAGAACGCCTGTTCTGAATCCTTTTTGCAAAGCGTACTCCAATGTTGAAGGAAGAGGAGGTTATGAAACGATAAAAAGACAGCTCAACAAAGCCATCTATGATACATTAAAGATTGCTGAATTTGAAACTTCTTGGCTCTCAAAGGTTTATACGAAGGAAATCTTTGAGAGATTTCAATCTGAGGTTGAAGGTATGTACACTTGCTTCAACACCAGGCAGGTTAATGTGAATGGGCCGATCATAACATACATTGTGAAGGAAAGAGTTGAGGTGGAGCCAAATGAAAAGGAGGTAAGATATTTTGAAGTGCTGTATGAGACAACTCAAGAGGAAATCAGATGCATATGCAGTTTGTTCAACTACAAAGGTTATTTATGCAGGCATGCTTTAAATGTGCTTAATTATAATGGAGTTGAAGAAATCCCGGCTCGATACATTTTACCGCGATGGTGTAAGGATTTCAAGTGCAGGCAATTAAGGGATTGTGATTTGAGTGATTTAGATGTGTCTGATCAAATGGAATTGCAAAAAATGGCCTCCAACTGTCACTGCCACTGGACAAGCAACAAGACAAGCATTGACTCAAAAGAAGCCAATGGCCATCACAAGTCGATCAATGCCCAAAAACCCATGACTCTAGGAGCCAGAGGCTCACAAAAACTCCCCACCGCTGCACTATCATCCACTTCCACTCAAATGAGATTTCCTTTTCCAATCTCCACCTCACAATTCCTCTTTAAAAAACAACTATCCCCTTTTCTTCTTCCCCCAAGCTTTCTGAATCCTCTCACAGACATGGCTTCCAACAAGTTTACGGCGGTCATACTCATGACTCTCCTCTGCTACACAATATTCTCTGCAGCTTGTGACCCATGCCAGCCAAAACCGCTGAAGCCAAAGCCAAAGCCAAAGCCAAAGCCAGAAATAACGCCTAGCCTTCCCAAATCCTGCCCCAAGGACACGTTGAAGCTTGGTGCCTGTGCAGACCTACTAGGAGGTGTGGTTAACCTTGTACTAGGAACCCCACTTTCAAGCAAGTGTTGCGCTTTGCTCGAAGGCTTATCAGATTTAGAAGTTGCCCTTTGTCTCTGCACTGCCATTAAAGCCAATGTGCTTGGAATTAACCTGAACGTCCCCATTACTCTTAGTGCACTCGTTAGCTCTTGCCAGAAGACACTTCCCCCTGGCTTCCAATGTGAATAG 1743 42.86 MEEVCLITDPVFDKGDKDEVEVDGCHLGEFDGDSGEAQSKLNTSSPTVGLEFNSFDEAYDFYNIYAKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEANNPRPETRTGCPAMIILRLVGSKKWRIIEVELGHNHPVSPQIKRFYKSHKKMILAAKQAHPPLQPVTEVHTIKLYRTPVLNPFCKAYSNVEGRGGYETIKRQLNKAIYDTLKIAEFETSWLSKVYTKEIFERFQSEVEGMYTCFNTRQVNVNGPIITYIVKERVEVEPNEKEVRYFEVLYETTQEEIRCICSLFNYKGYLCRHALNVLNYNGVEEIPARYILPRWCKDFKCRQLRDCDLSDLDVSDQMELQKMASNCHCHWTSNKTSIDSKEANGHHKSINAQKPMTLGARGSQKLPTAALSSTSTQMRFPFPISTSQFLFKKQLSPFLLPPSFLNPLTDMASNKFTAVILMTLLCYTIFSAACDPCQPKPLKPKPKPKPKPEITPSLPKSCPKDTLKLGACADLLGGVVNLVLGTPLSSKCCALLEGLSDLEVALCLCTAIKANVLGINLNVPITLSALVSSCQKTLPPGFQCE 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28461745 28464786 + BLOR05091 Blo12g01072 68333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01072 580 Pfam SWIM zinc finger 290 314 IPR007527 GO:0008270
Blo12g01072 580 Gene3D - 496 580 IPR036312 -
Blo12g01072 580 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6-LIKE ISOFORM X1 195 226 - -
Blo12g01072 580 Pfam Hydrophobic seed protein 497 579 IPR027923 -
Blo12g01072 580 Pfam FAR1 DNA-binding domain 60 144 IPR004330 -
Blo12g01072 580 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 24 178 IPR031052 GO:0006355
Blo12g01072 580 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 195 226 IPR031052 GO:0006355
Blo12g01072 580 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 226 361 IPR031052 GO:0006355
Blo12g01072 580 ProSiteProfiles Zinc finger SWIM-type profile. 281 317 IPR007527 GO:0008270
Blo12g01072 580 SMART 26again6 292 319 IPR006564 GO:0008270
Blo12g01072 580 CDD HPS_like 494 579 IPR027923 -
Blo12g01072 580 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 500 579 IPR036312 -
Blo12g01072 580 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6-LIKE ISOFORM X1 226 361 - -
Blo12g01072 580 SMART aai_6 497 579 IPR016140 -
Blo12g01072 580 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6-LIKE ISOFORM X1 24 178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01072 K17604 ZSWIM3; zinc finger SWIM domain-containing protein 3 - vvi:100242411 306.605
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01047 Blo-Chr2:40410877 Blo12g01072 Blo-Chr12:28461745 1.58E-30 dispersed
Blo03g00167 Blo-Chr3:4222379 Blo12g01072 Blo-Chr12:28461745 5.43E-23 dispersed
Blo05g00143 Blo-Chr5:1270672 Blo12g01072 Blo-Chr12:28461745 6.69E-40 dispersed
Blo08g00408 Blo-Chr8:7640237 Blo12g01072 Blo-Chr12:28461745 9.27E-22 dispersed
Blo12g01072 Blo-Chr12:28461745 Blo19g00256 Blo-Chr19:14683761 2.55E-31 dispersed
Blo12g01072 Blo-Chr12:28461745 Blo10g00525 Blo-Chr10:12768295 4.19E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g500 . Blo12g01072 . . . . . . . . Cma01g01512 . . . . . . . . . . . . . Cla05g01726 Cam05g1839 Cec05g1853 Cco05g1910 Clacu05g1827 Cmu05g1710 Cre05g1841 . Cone7ag1692 . . Lsi04g02118 Csa03g04322 Chy04g00378 . . . . . . . . . . Cmo01g01565 . . . . . . Cpe02g00444 . . . . . . . . . . . . . . . . . Cme04g00421
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13096 PF03101 FAR1 6.30E-22 CL0274 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g01072 Blo_Chr12 FPKM 3.729255 3.402309 2.159382 1.777848 11.470058 12.281581 11.861319 3.874278 3.092824 2.666914