Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01077 ATGTACCCTAACCCCAAGGAGGCAAACATCTTTTTATCCCTTGGTCGCCATGTGGACTTATATTTTCCTCCTCCCAAGAGGTGCCGAGTTAGTACTCCATTTGTGTTTAGCGGGGAAAGGATTGAGGCAAACGAGGAGGCCTCTATTGAAGTTCTTCCAGATGAATGCCTTTTTGAGATCTTTAAAAGATTGGAAGGAGGCAAAGAAAGGAGTTCTTGCTCGTCTGTTTCTAAACGCTGGCTTATGCTTTTGAGCAACATTCGTGGAAATGAATTTCACAGCTCCAAGTCTGTTGGCTTTTCAAAATCTAAAGATGAACTGGATGTCAAAGAAGAGGGAATGGAAATTGATGGATATCTTTCCAGAAGCTTGGAAGGGAAGAAGGCAACTGATGTAAGACTTGCTGCCATTTCTGTTGGAACCTCATCCCGTGGGGGTCTGGGCAAGCTTTTGATTCGAGGAAGCAATCATGATCGACAAGTAACAGATCTTGGCTTTAGGGCAATCTCCCGTGGATGCCCCTCGCTCAAGGTTCTTTCTCTATGGAACCTGTCTTCTGTTGGAGATGAAGGCTTGTATGAGGTTGCCAATGGCTGTCACTTACTGGAAAAACTTGACCTGTGTGAATGTCCTTTGATTTCTGATAAGGGTTTGCTGGAAATTGCGAAGAACTGCCCTAATCTTACTGATATTACAATAGAGTCTTGTTATAGAATTGGCAATGCAGGCATGCAAGCTCTTGCAAAATTTTGTTCCAAACTGAAGTCAGTTTCAATCCGAAACTGCCCTCTTGTTGGGGATCAAGGAATTGCAAGCTTGTTATCATCCACTTCTTATGTCCTAAAAAAGGCCAAGCTCCATGCTTTGAACATTACCGATACGTCTCTTGCTGTTATTGGGCACTATGGCAAGGCAATCACTGATCTTTCCCTTACAAGCCTCACAAAGGTTAGTGAGAGGGGTTTTTGGGTCATGGGCAATGGCCATGGGTTACAGATGCTGAAATCTTTGACAATTACGTCCTGCCATGGTGTGACTGATGTGGGGCTTGCTGCTATCGGTAAGGGTAGCCCAAATCTCAAGCACTTTTGCCTGCGGAAATGCAATTTTTTATCCGACAATGGGCTGCTCGCTTTTGCTCAGGCTGCTGGATCACTTGAGAGCTTACAATTGGAAGAGTGTCACAGGATCTCCCAGGTTGGGTTATTTGGCGTTGTTTTGAACTGTGGTGCAAAGTTGAAGACTCTTTCTCTGGTAAACTGCTTGGGGATTAAGGACCTGAGTTCGCAAATAGCAGGTGTGGCTCCATGTAAGTCTCTGCGATCAATGACCATTCGAAATTGCCCTGGTTTTGGTAATGCTAGCCTGGCCTTACTGGGTGAGCTGTGCCCCCAGCTTCAGCACCTGGAACTTTGTGGGCTTGAGGGAATTACTGATGATGGGTTTCTCCCACTGCTCAAATCCTGCGAGGCAGGTTTGTTCAAGGTCAATATCCGTGGTTGTGTAAATCTGACAGACAAATTGATTTCATCCATGACTGAACATCACGGTTGGTCTCTTGAGTTACTTCATCTCAATGGCTGCCAGAAAATCTCCGATGCTAGTTTGGGAGCGATTGCAAAGAATTGCACTTCACTCAGAGATCTCGAGGTGTCAAAATGTACAATCACTGATTTTGGAGTAGCAGCCCTGGCCCAGGCAAATCAGGTCAATTTGCAGATACTTTCGCTTTCTGGTTGTTCTTTCATCTCAGACAAAAGTTTGCCTGCTCTGCTAAAATTAGGCAAATCACTTGCTGGGTTGAACCTACAACAATGCAAATCAATCAGCACAGGAGCAGTCGACCTGCTAGGAGAGCAGCTATGGGGGTGTGACATCCTATCCTAA 1887 45.26 MYPNPKEANIFLSLGRHVDLYFPPPKRCRVSTPFVFSGERIEANEEASIEVLPDECLFEIFKRLEGGKERSSCSSVSKRWLMLLSNIRGNEFHSSKSVGFSKSKDELDVKEEGMEIDGYLSRSLEGKKATDVRLAAISVGTSSRGGLGKLLIRGSNHDRQVTDLGFRAISRGCPSLKVLSLWNLSSVGDEGLYEVANGCHLLEKLDLCECPLISDKGLLEIAKNCPNLTDITIESCYRIGNAGMQALAKFCSKLKSVSIRNCPLVGDQGIASLLSSTSYVLKKAKLHALNITDTSLAVIGHYGKAITDLSLTSLTKVSERGFWVMGNGHGLQMLKSLTITSCHGVTDVGLAAIGKGSPNLKHFCLRKCNFLSDNGLLAFAQAAGSLESLQLEECHRISQVGLFGVVLNCGAKLKTLSLVNCLGIKDLSSQIAGVAPCKSLRSMTIRNCPGFGNASLALLGELCPQLQHLELCGLEGITDDGFLPLLKSCEAGLFKVNIRGCVNLTDKLISSMTEHHGWSLELLHLNGCQKISDASLGAIAKNCTSLRDLEVSKCTITDFGVAALAQANQVNLQILSLSGCSFISDKSLPALLKLGKSLAGLNLQQCKSISTGAVDLLGEQLWGCDILS 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28486689 28488575 - BLOR05096 Blo12g01077 68338

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01077 628 SMART LRR_CC_2 225 250 IPR006553 -
Blo12g01077 628 SMART LRR_CC_2 463 488 IPR006553 -
Blo12g01077 628 SMART LRR_CC_2 490 515 IPR006553 -
Blo12g01077 628 SMART LRR_CC_2 199 224 IPR006553 -
Blo12g01077 628 SMART LRR_CC_2 251 276 IPR006553 -
Blo12g01077 628 SMART LRR_CC_2 173 198 IPR006553 -
Blo12g01077 628 SMART LRR_CC_2 437 462 IPR006553 -
Blo12g01077 628 SMART LRR_CC_2 543 567 IPR006553 -
Blo12g01077 628 SMART LRR_CC_2 383 408 IPR006553 -
Blo12g01077 628 SMART LRR_CC_2 331 356 IPR006553 -
Blo12g01077 628 SMART LRR_CC_2 569 594 IPR006553 -
Blo12g01077 628 SMART LRR_CC_2 357 382 IPR006553 -
Blo12g01077 628 SMART LRR_CC_2 303 328 IPR006553 -
Blo12g01077 628 SMART LRR_CC_2 517 542 IPR006553 -
Blo12g01077 628 SUPERFAMILY RNI-like 159 402 - -
Blo12g01077 628 PANTHER - 5 618 - -
Blo12g01077 628 Gene3D - 42 87 - -
Blo12g01077 628 Pfam Leucine Rich repeat 542 565 IPR001611 GO:0005515
Blo12g01077 628 Pfam Leucine Rich repeat 332 353 IPR001611 GO:0005515
Blo12g01077 628 SUPERFAMILY RNI-like 357 609 - -
Blo12g01077 628 PANTHER UNCHARACTERIZED 5 618 - -
Blo12g01077 628 Gene3D Ribonuclease Inhibitor 133 224 IPR032675 -
Blo12g01077 628 Pfam F-box-like 50 83 IPR001810 GO:0005515
Blo12g01077 628 Gene3D Ribonuclease Inhibitor 429 628 IPR032675 -
Blo12g01077 628 Gene3D Ribonuclease Inhibitor 225 428 IPR032675 -
Blo12g01077 628 SUPERFAMILY F-box domain 40 85 IPR036047 GO:0005515
Blo12g01077 628 SMART fbox_2 52 94 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01077 K14515 EBF1_2; EIN3-binding F-box protein - qsu:111994331 886.33
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01387 Blo12g01077 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g01108 Blo-Chr7:30985269 Blo12g01077 Blo-Chr12:28486689 1.97E-11 dispersed
Blo08g00417 Blo-Chr8:8111903 Blo12g01077 Blo-Chr12:28486689 0 dispersed
Blo12g01077 Blo-Chr12:28486689 Blo14g00767 Blo-Chr14:23251822 0 dispersed
Blo04g01058 Blo-Chr4:15131067 Blo12g01077 Blo-Chr12:28486689 3.08E-09 transposed
Blo08g00371 Blo-Chr8:6165080 Blo12g01077 Blo-Chr12:28486689 4.99E-09 transposed
Blo01g01387 Blo-Chr1:52162078 Blo12g01077 Blo-Chr12:28486689 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g482 Blo01g01387 Blo12g01077 Bda01g00745 Bda03g00070 . Bpe02g00562 Bma04g00067 . Cmo05g00383 Cmo12g00287 Cma01g01503 Cma05g00382 Car09g00403 Car12g00319 Sed01g1375 Cpe07g00296 Cpe06g00342 Bhi04g00953 Tan02g2722 Cmetu03g1877 . Hepe10g0251 . Lcy13g1790 Cla05g01740 Cam05g1853 Cec05g1865 Cco05g1927 Clacu05g1843 Cmu05g1724 Cre05g1857 Cone4ag1785 Cone7ag1700 Cone17ag1021 Cone20ag0670 Lsi04g02132 Csa03g04337 Chy04g00365 Cme03g01616 . . . . . Bpe04g00055 . . Sed05g1700 Cmo01g01560 Cmo09g00469 Cma09g00460 Cma12g00338 . Car05g00325 Cpe11g00327 Cpe02g00452 Bhi09g02242 Tan01g3650 Cmetu04g1455 . Hepe01g2024 Mch11g0558 . Cla08g01334 Cam08g1796 Cec08g1375 Cco08g1503 Clacu08g1490 . Cre08g1277 Lsi08g01205 . Chy03g01120 Cme04g00407
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005429 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g01077 Blo_Chr12 FPKM 7.513304 8.285933 9.737392 10.000541 5.374965 5.190985 4.782914 14.326613 12.055201 14.737251