Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01078 ATGAGGGTGTGTCTGTGTTGGGGGCAACCAGCACTGCATCCTGCGAATGCATTTCAGTGCGCCATGTGGCAGTTGTCATCCATCTGGAGGACGCTACGACCTAATAGCCATTTATTCTGGTTGTTAAGAAGCTGTGGTTCTGGTTCTTTGATAGTTGAAGGCTTGGGCAGGAAGCGAAGGGTATGGCTGGGGACATTTGAGACAGCAGAGGCGGCAGCACGTGCTTATGACCAAGCAGCCATATTGATGAGCGGCCACAATGCCAAGACCAATTTTCCTAGCTCAAACAATCAAATTGAAGACTCGAAGAATGGGGATGGATCTCCATTGTCACCAAAGGAACTTTCAGAGCTTCTAAGCACAAAGCTAAGAAAATGCTGCAAAGACCCATCTCCTTCTCTCACGTGCTTGAGGCTCGACAGCGATAATTCTCACATCGGGGTGTGGCAGAAGCGGGCTGGGACTCGTGCAGGCTCCAATTGGGTCATGAGGATCGAGCTTGGGAAGAAAAGTTCGCATCATTCAGAGAATGATCCGCCATTATCGACAGTGGAAACGAAGAGAGGAATGATCGACGGGGAAAACGAAATGGAGGAAGAGGATAGAATTGCAATGCAAATGATTGAGGAGTTGCTTAACTGGAACTGTCCAGTCGAGAAAGGGAGTGAGTCTTCTTCCTCCTCATTTGACCTGTGGAAATAG 702 48.72 MRVCLCWGQPALHPANAFQCAMWQLSSIWRTLRPNSHLFWLLRSCGSGSLIVEGLGRKRRVWLGTFETAEAAARAYDQAAILMSGHNAKTNFPSSNNQIEDSKNGDGSPLSPKELSELLSTKLRKCCKDPSPSLTCLRLDSDNSHIGVWQKRAGTRAGSNWVMRIELGKKSSHHSENDPPLSTVETKRGMIDGENEMEEEDRIAMQMIEELLNWNCPVEKGSESSSSSFDLWK 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28493030 28494358 + BLOR05097 Blo12g01078 68339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01078 233 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 58 219 - -
Blo12g01078 233 Pfam AP2 domain 57 86 IPR001471 GO:0003700|GO:0006355
Blo12g01078 233 Gene3D AP2/ERF domain 13 94 IPR036955 GO:0003700|GO:0006355
Blo12g01078 233 MobiDBLite consensus disorder prediction 92 113 - -
Blo12g01078 233 SMART rav1_2 42 99 IPR001471 GO:0003700|GO:0006355
Blo12g01078 233 ProSiteProfiles AP2/ERF domain profile. 28 93 IPR001471 GO:0003700|GO:0006355
Blo12g01078 233 SUPERFAMILY DNA-binding domain 51 95 IPR016177 GO:0003677
Blo12g01078 233 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 58 219 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g01386 Blo12g01078 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00571 Blo-Chr10:16821112 Blo12g01078 Blo-Chr12:28493030 3.41E-44 dispersed
Blo12g01078 Blo-Chr12:28493030 Blo10g00517 Blo-Chr10:12050628 2.31E-13 dispersed
Blo01g01386 Blo-Chr1:52152465 Blo12g01078 Blo-Chr12:28493030 1.95E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13098 PF00847 AP2 1.30E-06 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01078 - - mcha:111006480 225.713