Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01079 ATGGGTAAGGTAAATAGTAAGCGATGTGGAGGGCATGATAGTCAACCGAGAACGCTCTTCATTTCCCCCCATTTGAAACCCTATCTCTCGCCCTCTCAGTCTCTTACTTTAGTTCAGAACGGTAGAGGTCGGGTCGCTCTTCCTTCTACACTTTTCCAAATCTTCTTTCCAGTCGACGACATGGGAGAGATGAAAGATAACGAGTATGAGGAAGAGTTCGTCGACTACGAGGAAGAAGAAGACAGGGTCCCCGACTCTGATGGAGCTAAAGTCAATGGCGAAGCGGGCAAGAAGGGCTATGTTGGGATCCATAGTTCAGGATTTAGAGACTTCCTTTTGAAGCCAGAACTTCTTCGTGCTATTGTGGATTCTGGATTTGAGCATCCTTCTGAAGGCAATTTCTTACTCCTTTTCTGCGAGACTAAATATCCATTGCTGACTTTGTTGAATTTTCTCAAGTTTTTGTTATCCATCATTAGCTTTAGGTATCTCTCAATGTTGTTCCTTTTATGTTTTCAGGGAAGTTATAATTTACTTAATGATGGTTCGTTGGATCCGATTTTATTTGGTTCTTCACCAGTTCAACACGAATGTATTCCACAAGCCATCCTGGGTATGGATGTGATTTGTCAAGCAAAATCTGGAATGGGAAAAACTGCTGTTTTTGTTCTTTCATCTCTGCAACAAATTGACCCTATTCCAGGTCAAGTTTCTGCGCTTGTTCTGTGTCATACAAGGGAGTTGGCATATCAGATTTGTCATGAGTTTGAAAGGTTCAGCACGTACCTGGTCGATCTTAAGGTTGCTGTCTTCTACGGTGGCGTCAGTATCAAAATTCACAAAGATTTGCTAAAGAATGAATGCCCACATATTGTTGTTGGAACACCGGGAAGAATATTGGCACTGGCAAGAGATAAGGATCTTTCTTTAAAGAATGTTAGGCATTTTATCCTGGATGAGTGTGACAAAATGCTTGAGTCCCTTGACATGAGGAGAGATGTTCAGGAGATTTTTAAGATGACTCCTCATGATAAACAAGTAATGATGTTTTCTGCCACCCTTAGCAAAGAGATCCGCCCAGTTTGTCAGAAGTTTATGCAAGATGCCATTAATTCTTTTGAACATGAAAAGTTTATTTCACACGTTGCTAATGCCCACTTTTCCTGGGGTTTTCAGATGTTTATCATTGGAGTCCCTTATGATCTTGTTGTCAGTGTTCTTCGTAGTTTCTTATCCAGTCAATTTAGGGGAGTATTTCCAATGGAAATTTATGTTGACGATGAGGCAAAGTTGACCTTGCATGGTCTTGTGCAGCACTACATCAAATTAACCGAGTCGGAGAAAAATCGCAAGTTGAATGATCTCCTTGATGCATTGGACTTTAATCAAGTCGTTATTTTTGTCAAAAGTGTAAGCAGAGCTGCCGAGCTGGATAAATTGCTTGTGGAGTGTAATTTCCCTTCTATATGCATCCATTCTGGCATGCCTCAGGAAGAAAGGTTGACACGATACAAAGGTTTTAAGGAGGGGCATAAGAGGATTCTTGTTGCGACAGATTTGGTTGGTAGAGGTATTGATATCGAGCGTGTCAACATTGTTATCAACTATGACATGCCAGACTCTGCTGATACTTACCTGCATAGGGTTGGGAGGGCTGGTAGGTTTGGTACCAAAGGCCTAGCGATAACATTTGTGTCATCTGCTGCTGATTCTGCTATTCTCAATAATGTTCAAGATAGGTTTGACGCTGATATCCAGGTCCTCCCTGAGCAGATTGATACCTCTACATACAACAAGAAAATGTTGGGGGGATTAAAGATGAGAAGGGTCTTCATTTTTGAGTTGTTCAACATTGCTGCTTGCCATCTTAGTTGTTCGGATGGGAAGATCATTGTGAAAGTTCTCCTAGATGGGTTTGGGTTCTGCAGCATACAGACAGGGTGGTTGGTTGAGACTTAA 1959 41.65 MGKVNSKRCGGHDSQPRTLFISPHLKPYLSPSQSLTLVQNGRGRVALPSTLFQIFFPVDDMGEMKDNEYEEEFVDYEEEEDRVPDSDGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGNFLLLFCETKYPLLTLLNFLKFLLSIISFRYLSMLFLLCFQGSYNLLNDGSLDPILFGSSPVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPIPGQVSALVLCHTRELAYQICHEFERFSTYLVDLKVAVFYGGVSIKIHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQKFMQDAINSFEHEKFISHVANAHFSWGFQMFIIGVPYDLVVSVLRSFLSSQFRGVFPMEIYVDDEAKLTLHGLVQHYIKLTESEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMPQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSAILNNVQDRFDADIQVLPEQIDTSTYNKKMLGGLKMRRVFIFELFNIAACHLSCSDGKIIVKVLLDGFGFCSIQTGWLVET 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28496511 28500608 + BLOR05098 Blo12g01079 68340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01079 652 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE ISOFORM X1 87 372 - -
Blo12g01079 652 SMART ultradead3 187 382 IPR014001 -
Blo12g01079 652 CDD SF2_C_DEAD 436 565 - -
Blo12g01079 652 Pfam DEAD/DEAH box helicase 193 358 IPR011545 GO:0003676|GO:0005524
Blo12g01079 652 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 87 372 - -
Blo12g01079 652 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE ISOFORM X1 420 595 - -
Blo12g01079 652 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 451 596 IPR001650 -
Blo12g01079 652 Gene3D - 94 372 IPR027417 -
Blo12g01079 652 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 420 595 - -
Blo12g01079 652 CDD DEADc_DDX39 105 368 - -
Blo12g01079 652 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 567 IPR027417 -
Blo12g01079 652 SMART helicmild6 475 556 IPR001650 -
Blo12g01079 652 Pfam Helicase conserved C-terminal domain 449 556 IPR001650 -
Blo12g01079 652 Gene3D - 432 600 IPR027417 -
Blo12g01079 652 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 199 372 IPR014001 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo12g01079 Blo18g00029 CCT
Blo12g01079 Blo17g00022 CCT
Blo12g01079 Blo18g00029 ECH
Blo12g01079 Blo17g00022 ECH
Blo01g01383 Blo12g01079 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g01079 Blo-Chr12:28496511 Blo18g00028 Blo-Chr18:211468 1.33E-148 dispersed
Blo01g01383 Blo-Chr1:52119211 Blo12g01079 Blo-Chr12:28496511 0 wgd
Blo12g01079 Blo-Chr12:28496511 Blo17g00022 Blo-Chr17:127366 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01079 K12812 - mnt:21394881 655.21