Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01081 ATGGAAGCAAGTGCAGGACTGGTTGCTGGCTCTTACAAGAGAAATGAGATTGTTCGGATTCGTCACGATTCCGACGGCGGGCCAAAACCATTGAAGCATTTGAACGCCCAAATTTGCCAGATATGTGGTGATACTGTTGGACTCACAGCCTCAGGTGATGTATTTGTCGCATGCAATGAATGTGCCTTCCCTGTTTGTCGGCCTTGTTACGAGTATGAGAGGAAAGATGGGAACCAATCTTGCCCCCAGTGCAAGACTAGATACAAAAGGCACAAAGGAAGTCCAAGAGTTGACGGAGATGATGATGAGGATGATGTCGATGATATTGAAAATGAGTTCAATTATGGGCAAGGAAATAGCAAGGCAAGACGCCAGTGGCGTGGAGAAGATGCTGATCTGTCATCATCTGCTAGACACGAGTCCCAACAACCAATACCTCTTCTAACCAACGGGCAACCTATATCTGGTGAAATTCCTGCTACACCGGACAACCAATCTGTTCGGACAACGTCAGGGCCTTTAGCTCCTTCTGAGAAAAATGTTCATTCCCTTCATTTCATTGATCCACGTCAGCCAGTTCCTGTAAGGATTGTCGATCCATCGAAAGACTTGAATGCTTATGGCCTTGGAAATGTTGACTGGAAGGAAAGAGTTGAAGGCTGGAAGCTCAAACAAGAGAAAACCATGATGCAGGTGACAAGTAGATACACTGACGGGAAGGGCGATATGGAAGGCACAGGGTCTAATGGAGATGAACTGCAAATGGCTGACGATGGTAGACAACCTTTGAGTCGTGTGGTGCCTATTTCTTCTTCTCACTTGACCCCCTATCGGGTTGTGATCATACTTCGACTAATTATTTTGGGATTCTTCTTACAATACCGAACAACACACCCTGTGAAGGATGCATATCCATTGTGGCTGACTTCAGTTATTTGTGAGATTTGGTTTGCATTGTCATGGCTATTGGATCAGTTTCCTAAATGGTCTCCCATCAATCGCGAAACCTACCTCGACAGGCTTGCATTGAGATATGATCGTGAAGGAGAGCCGTCGCAGCTTGCTCCTGTAGATGTTTTTGTGAGTACAGTGGATCCACTTAAAGAGCCTCCTCTCATTACTGCAAATACTGTTCTTTCCATACTTGCTGTGGATTACCCTGTTGACAAAGTCTCTTGTTATGTCTCTGATGATGGTTCGGCCATGCTGACCTTCGAAGCCCTCTCTGAAACTGCAGAATTTGCAAGAAAGTGGGTTCCCTTCTGCAAAAAACATAACATTGAGCCAAGGGCTCCTGAATTTTATTTTGCTCAAAAAATAGACTATTTGAAGGATAAGATTCAGCCCTCATTTGTGAAAGAACGTCGAGCAATGAAGAGGGAGTATGAAGAATTCAAAGTTCGGGTAAATGCACTGGTGGCCAAAGCACAGAAGACGCCTGAAGAAGGCTGGACGATGCAGGATGGTACTCCATGGCCTGGAAATAATCCAAGAGATCATCCAGGAATGATCCAGGTTTTTCTAGGACATAGTGGAGGACTTGACACAGATGGAAATGAGCTCCCTCGACTTGTTTATGTTTCTAGAGAAAAAAGACCCGGCTTCCAGCATCATAAGAAAGCTGGAGCAATGAATGCATTGATTCGAGTTTCCGCCGTCCTTACCAATGGAGCATACCTCCTGAATGTTGATTGTGATCACTACTTTAACAACAGCAAAGCTCTCAAGGAAGCTATGTGTTTCATGATGGATCCTGCTTATGGAAAGAAGACATGCTACGTACAGTTCCCACAGCGTTTTGATGGCATTGATTTGCACGATCGATATGCAAATCGAAACATTGTCTTCTTCGATATCAACTTGAAGGGGCTGGATGGCATCCAGGGCCCTGTATATGTTGGAACTGGTTGTTGCTTCAATAGGCAAGCTTTATATGGGTATGATCCTGTTTTGACCGAGAAAGATTTGGAGCCTAATATTATTGTTAAGAGTTGCTGCGGCCAAAGAAAGAAGGGTAAGAGTGGCAATAAGAAGTACACCGACAAGAAGCGGGCCATGAAAAGAACTGAATCTACTATCCCTATCTTCAATATGGAAGACATTGAGGAGGGTGTTGAAGGATATGACGATGAGAGGTCGCTACTGATGTCTCAGAAGAGCTTAGAGAAGCGTTTCGGCCAATCTGCAGTTTTTATTGCAGCAACTTTCATGGAACAGGGAGGTATTCCACCTACAACTAATCCTGCAACCCTTCTAAAGGAAGCCATTCATGTTATCAGCTGTGGATATGAAGACAAGACAGATTGGGGCAAAGAGATCGGATGGATCTATGGCTCTGTTACGGAAGATATCTTAACTGGGTTCAAGATGCATGCCCGTGGTTGGATTTCAATCTATTGCATGCCTCCTCGGCCAGCATTCAAGGGGTCTGCTCCCATCAATCTTTCTGATCGGTTGAATCAGGTGCTGCGATGGGCTCTGGGCTCGATTGAGATTTTACTAAGCAGGCATTGTCCCATCTGGTATGGCTACAATGGGAGACTAAAGCTTTTGGAAAGAATAGCATACATCAATACGATTGTCTACCCGCTTACTTCCATCCCTCTGTTAGCTTATTGTATTCTTCCTGCATTCTGTCTTCTGACCGGAAAATTCATCATTCCAGAGATAAGCAACTTTGCTAGCATGTGGTTCATCCTCCTTTTCGTGTCCATCTTTGCCACTGGAATCCTCGAACTTAGATGGAGTGGAGTCAGCATCGAAGACTGGTGGAGGAATGAACAATTCTGGGTCATTGGGGGTACTTCAGCTCATTTATTTGCTGTCTTCCAAGGGCTCTTGAAAGTGCTCGCTGGAATCGACACCAACTTCACTGTCACTTCCAAGGCATCCGATGACGATGGTGAATTCTCTGAGCTTTACGAGTTCAAGTGGACATCTCTTCTCATCCCTCCCACCACCGTAATTATTGTGAACATGGTGGGTATTGTGGCCGGAGTTTCCTACGCCATTAACAGCGGGTACCAGTCATGGGGTCCTCTCTTTGGCAAGCTCTTCTTTGCATTATGGGTCATTGTTCATTTGTACCCGTTCCTCAAAGGTTTGCTGGGTCGGCAAAATCGCACCCCGACTATTGTCATCGTGTGGTCCATTCTCCTTGCTTCTATATTCTCGTTGCTCTGGGTGCGGATTGACCCATTCACGTCTGATGCGGCGAAAGCTGCTTCGAGAGGTCAATGTGGCATCAATTGCTAG 3255 45.44 MEASAGLVAGSYKRNEIVRIRHDSDGGPKPLKHLNAQICQICGDTVGLTASGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRVDGDDDEDDVDDIENEFNYGQGNSKARRQWRGEDADLSSSARHESQQPIPLLTNGQPISGEIPATPDNQSVRTTSGPLAPSEKNVHSLHFIDPRQPVPVRIVDPSKDLNAYGLGNVDWKERVEGWKLKQEKTMMQVTSRYTDGKGDMEGTGSNGDELQMADDGRQPLSRVVPISSSHLTPYRVVIILRLIILGFFLQYRTTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWSPINRETYLDRLALRYDREGEPSQLAPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRVNALVAKAQKTPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEKDLEPNIIVKSCCGQRKKGKSGNKKYTDKKRAMKRTESTIPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSAVFIAATFMEQGGIPPTTNPATLLKEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPLTSIPLLAYCILPAFCLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGEFSELYEFKWTSLLIPPTTVIIVNMVGIVAGVSYAINSGYQSWGPLFGKLFFALWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSDAAKAASRGQCGINC 1084
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28512601 28517854 - BLOR05100 Blo12g01081 68342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01081 1084 Coils Coil 455 475 - -
Blo12g01081 1084 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Blo12g01081 1084 MobiDBLite consensus disorder prediction 137 176 - -
Blo12g01081 1084 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Blo12g01081 1084 Pfam Cellulose synthase 357 1074 IPR005150 GO:0016020|GO:0016760|GO:0030244
Blo12g01081 1084 Pfam Zinc-binding RING-finger 29 106 IPR027934 -
Blo12g01081 1084 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 20 1084 - -
Blo12g01081 1084 SUPERFAMILY Nucleotide-diphospho-sugar transferases 371 900 IPR029044 -
Blo12g01081 1084 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 515 652 IPR029044 -
Blo12g01081 1084 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Blo12g01081 1084 PANTHER CELLULOSE SYNTHASE 20 1084 - -
Blo12g01081 1084 MobiDBLite consensus disorder prediction 75 176 - -
Blo12g01081 1084 SUPERFAMILY RING/U-box 22 111 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00493 Blo-Chr5:8182909 Blo12g01081 Blo-Chr12:28512601 0 dispersed
Blo12g01081 Blo-Chr12:28512601 Blo16g00514 Blo-Chr16:20825520 0 dispersed
Blo06g00601 Blo-Chr6:28735117 Blo12g01081 Blo-Chr12:28512601 0 transposed
Blo12g00580 Blo-Chr12:24105551 Blo12g01081 Blo-Chr12:28512601 0 transposed
Blo16g00915 Blo-Chr16:37045354 Blo12g01081 Blo-Chr12:28512601 0 transposed
Blo01g01381 Blo-Chr1:52071896 Blo12g01081 Blo-Chr12:28512601 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01081 K10999 - vvi:100254408 2123.21