Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01085 ATGATCATCTTTTTCTGTCTGGTTTCGTTAGGCTTTACCGAATCAGCAGACTGTAGAATATCCCAGCTTCAAGCTTGGAAGACTACATTTGTGAAAAGGCATCTTACTGGCGAGTTTGAGAAGAAATATGAACCAACCATCGGTGTTGAAGTTCATCCCCTGGATTTTTTCACAAATTGTGGAAAAATTAGATTCTATTGCTGGGACACTGCAGGTCAGGAGAAATTTGGTGGTCTAAGGGATGGATATTACATCCATGGGCAGTGTGCGATTATCATGTTTGATGTTACTGCACGGTTAACATACAAGAATGTTCCAACTTGGCATCGAGATCTTTGCAGGGTTTGTGAAAACATCCCAATCGTGCTTTGTGGAAACAAAGTTGATGTGAAGAACAGGCAAGTGAAAGCGAAACAGGTGACCTTCCACCGCAAGAAGAATTTGCAGTACTACGAGATTTCTGCAAAGAGTAACTATAACTTTGAGAAGCCCTTCCTCTATCTTGCCAGAAAGCTTGCAGGGGATGCTAATCTTCATTTTGTGGAATCTCCGGCCTTGGCTCCTCCAGAAGTTCATATCGACTTGGCGGCTCAGCATCAGCACGAGGCGGAACTTGCAGTAGCTGCCAGTCAGCCTCTTCCAGATGACGATGATGACGCATTCGAGTGA 669 44.25 MIIFFCLVSLGFTESADCRISQLQAWKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVHIDLAAQHQHEAELAVAASQPLPDDDDDAFE 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28527550 28529732 - BLOR05104 Blo12g01085 68346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01085 222 Gene3D - 25 220 IPR027417 -
Blo12g01085 222 SMART rab_sub_5 27 175 - -
Blo12g01085 222 CDD Ran 27 180 - -
Blo12g01085 222 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 28 42 IPR002041 GO:0003924|GO:0005525|GO:0006913
Blo12g01085 222 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 169 191 IPR002041 GO:0003924|GO:0005525|GO:0006913
Blo12g01085 222 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 75 93 IPR002041 GO:0003924|GO:0005525|GO:0006913
Blo12g01085 222 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 95 116 IPR002041 GO:0003924|GO:0005525|GO:0006913
Blo12g01085 222 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 131 149 IPR002041 GO:0003924|GO:0005525|GO:0006913
Blo12g01085 222 PANTHER RAN GTPASE 26 222 IPR002041 GO:0003924|GO:0005525|GO:0006913
Blo12g01085 222 TIGRFAM small_GTP: small GTP-binding protein domain 27 165 IPR005225 GO:0005525
Blo12g01085 222 ProSiteProfiles small GTPase Ran family profile. 1 172 IPR002041 GO:0003924|GO:0005525|GO:0006913
Blo12g01085 222 PANTHER GTP-BINDING NUCLEAR PROTEIN 26 222 - -
Blo12g01085 222 SMART rho_sub_3 27 171 IPR001806 GO:0003924|GO:0005525
Blo12g01085 222 Pfam Ras family 27 172 IPR001806 GO:0003924|GO:0005525
Blo12g01085 222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 194 IPR027417 -
Blo12g01085 222 ProSiteProfiles small GTPase Rab1 family profile. 9 210 - -
Blo12g01085 222 SMART ran_sub_2 20 221 - -
Blo12g01085 222 SMART ras_sub_4 27 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01085 K07936 RAN; GTP-binding nuclear protein Ran - tcc:18588700 410.609
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01374 Blo-Chr1:51996855 Blo12g01085 Blo-Chr12:28527550 3.52E-147 dispersed
Blo12g01085 Blo-Chr12:28527550 Blo16g00650 Blo-Chr16:25892843 6.66E-22 dispersed
Blo12g01084 Blo-Chr12:28525086 Blo12g01085 Blo-Chr12:28527550 2.55E-123 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g439 . Blo12g01085 . Bda03g00062 . Bpe02g00576 Bma04g00060 . . Cmo12g00273 . . . . Sed08g0705 . . Bhi04g01002 Tan02g2699 Cmetu02g1205 . Hepe10g0272 . Lcy13g1760 . . . . . . . Cone4ag1810 Cone7ag1720 Cone17ag1037 Cone20ag0661 . . . Cme03g01644 . . . . . . . . . . . . Cma12g00321 . . . . . . . . . . . . . . . . . . . . Chy03g01146 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000590 3 3 3 1 2 4 3 4 4 1 4 4 3 4 4 6 4 5 3 4 4 2 3 3 1 3 4 6 5 4 104
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g01085 Blo_Chr12 FPKM 1.083506 1.224764 21.005442 21.471569 0.0 0.0 0.0 1.426857 1.156774 1.901809