Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01087 ATGGTGGGAGATGCGAGCTCCTGGGCTCGCGCAATCGTCAAGATCTCTCCCTATACCTTCTCCGCCGTTGGAATTGCCGTCGCTATCGGCGTTTCCGTTCTCGGCGCCGCGTGGGGAATTTATATAACTGGAAGTAGTTTGATTGGTGCTGCGATCAAAGCTCCACGTATTACTTCGAAGAATTTAATCAGTGTGATATTTTGTGAAGCAGTGGCCATATATGGTGTTATCGTGGCCATCATCTTACAAACAAAGTTAGAAAGTGTTCCAGCATCACAAATGTATGCGCCAGAGTCTCTCAGAGCAGGATATGCTATTTTTGCCTCTGGATTAATTGTGGGTTTTGCTAACCTGGTCTGCGGGTTGTGTGTAGGAATAATTGGAAGCAGCTGTGCATTATCTGACGCCCAAAACTCATCTCTTTTTGTGAAGATTCTTGTGATTGAAATCTTTGGTAGTGCCCTTGGGCTATTTGGTGTGATTGTAGGAATCATAATGTCGGCTCAAGCTTCTTGGCCGGCAAGGATTCCATGA 534 45.88 MVGDASSWARAIVKISPYTFSAVGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPASQMYAPESLRAGYAIFASGLIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPARIP 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28532149 28533412 - BLOR05106 Blo12g01087 68348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01087 177 SUPERFAMILY F1F0 ATP synthase subunit C 99 167 IPR035921 -
Blo12g01087 177 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 174 - -
Blo12g01087 177 CDD ATP-synt_Vo_c_ATP6F_rpt2 102 166 - -
Blo12g01087 177 Gene3D - 18 172 IPR035921 -
Blo12g01087 177 PRINTS Vacuolar ATP synthase 16kDa subunit signature 118 144 IPR000245 GO:0033179|GO:0046961|GO:1902600
Blo12g01087 177 PRINTS Vacuolar ATP synthase 16kDa subunit signature 145 168 IPR000245 GO:0033179|GO:0046961|GO:1902600
Blo12g01087 177 PRINTS Vacuolar ATP synthase 16kDa subunit signature 62 86 IPR000245 GO:0033179|GO:0046961|GO:1902600
Blo12g01087 177 PRINTS Vacuolar ATP synthase 16kDa subunit signature 36 60 IPR000245 GO:0033179|GO:0046961|GO:1902600
Blo12g01087 177 Pfam ATP synthase subunit C 107 166 IPR002379 GO:0015078|GO:0033177|GO:1902600
Blo12g01087 177 Pfam ATP synthase subunit C 24 82 IPR002379 GO:0015078|GO:0033177|GO:1902600
Blo12g01087 177 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 4 174 - -
Blo12g01087 177 CDD ATP-synt_Vo_c_ATP6F_rpt1 20 82 - -
Blo12g01087 177 SUPERFAMILY F1F0 ATP synthase subunit C 16 85 IPR035921 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g01371 Blo12g01087 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g01087 Blo-Chr12:28532149 Blo18g00785 Blo-Chr18:22701057 1.33E-21 dispersed
Blo01g01371 Blo-Chr1:51935608 Blo12g01087 Blo-Chr12:28532149 1.58E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01087 K03661 - cit:102611677 309.301