Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01089 ATGAATAAAGAGAATACTGCTGCCAATGTCGAAGAATCTATTGTTCGAGTCACACGTGCTAGGGCTAAAGCCTTAAGCACCACAGCCGTGACTGTCCACTCCTCCAGACCACCTTTGAAGGGTCCAAAGAATGTCTCCCGGGCAAATTTTAAACGAGCAGCTGCAGATGAGAAGAAAATTTCTGCACCTACTACTGCTGTTCTTCAACGTAAGAGGAGAGCAGTCCTTGGAGATGTAACTAACACCTTTTCTGAAAGTTCACATGCTACCTGTATAAATGCTTCTAAAATACAAATTACCAAGTCGACTGTAAGTGGTTCTACAAAATTAAGTGCAAAGATGGCAATGGATGTTTCTGTAAAAATTGCTGAGGTACCAGTCGATCCAAAGACAAAATTAGCTGAAGATTTATCAAAAATAAGGATGGCAGAAATGGAAGAGATTACTTTAAGGACTGAGCAAAAAGGAAATATTCTGCAAAGTACGTACCCTTGTATTAAATGTGGTTTAGCTGACCTGAAACTTCCCATACCTGCTGGACTGGAAGGATCTCAAAACAAAGAAGACGATTTGCCTTGCAAGAATATGGAAGCCTCAAATCACCTTTGCATCGTGGACATTGATTCAAGATCAAAGGATCCCCAAGCTTGCAGTTTATACGCCCCTGATATATACAAGATAATACATGTAACAGAGCTTGACCAAATGCCATCAACTAACTATATGGAACAGTTGCAGCGAGATGTTACTGCAAACATGCGAGGAATTCTGATTGATTGGCTAGTTGAGGTATCCGAAGAGTACAAATTGGTTCCTGATACACTTTATCTTACTACAAATATCATTGACCGATTTCTATCCAAAAATTACATTGAAAAACAAAAATTGCAACTCCTTGGTGTTACCTGCATGCTAATTGCCTCGAAATATGAAGAAATATGTTCAACGCGGGTGGAAGAATTCTGTTTCATTACTGACAACACTTACACAAAAGAACAGGTATTGGAGATGGAGAGCGAAGTCTTGAACTTATTGCATTTTCAGCTATCAGTTCCTACGACAAAAACTTTTCTTAGGAGATTTATTCAAGTAGCACAAGCTTGTTTAAAGGTTCCTTGCGTCGAATTAGAGTTTTTGGCTAACTATTTAGCAGAGTTGACTCTTGTTGAGTATAAGTTCTTAAAATTCCTGCCTTCTCTGATAGCAGCATCTGCAGTATTTCTCGCCAAATGGACAATTAACCAATCAAATCATCCTTGGAGTCCAACTCTTGCGCACTATACAACATACAACACTTCAGAGCTGAAAACTACAGTAATTGCCCTCGAAAGTTTACAACTGAACGCTGATGGTTCCTCCTTAAATGCCATTCGTGAGAAGTACAAACAACAAAAGATCTCGTTTATTTGTAATATGGCAGTTCAAATGTGTAGCAACATTGACTTCAGCACAATCAGTTCAAACGCTTTTCTAAAGTTCTGCTGCGACTTGGATGGAGGTCACCCTTAA 1509 39.23 MNKENTAANVEESIVRVTRARAKALSTTAVTVHSSRPPLKGPKNVSRANFKRAAADEKKISAPTTAVLQRKRRAVLGDVTNTFSESSHATCINASKIQITKSTVSGSTKLSAKMAMDVSVKIAEVPVDPKTKLAEDLSKIRMAEMEEITLRTEQKGNILQSTYPCIKCGLADLKLPIPAGLEGSQNKEDDLPCKNMEASNHLCIVDIDSRSKDPQACSLYAPDIYKIIHVTELDQMPSTNYMEQLQRDVTANMRGILIDWLVEVSEEYKLVPDTLYLTTNIIDRFLSKNYIEKQKLQLLGVTCMLIASKYEEICSTRVEEFCFITDNTYTKEQVLEMESEVLNLLHFQLSVPTTKTFLRRFIQVAQACLKVPCVELEFLANYLAELTLVEYKFLKFLPSLIAASAVFLAKWTINQSNHPWSPTLAHYTTYNTSELKTTVIALESLQLNADGSSLNAIREKYKQQKISFICNMAVQMCSNIDFSTISSNAFLKFCCDLDGGHP 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28551756 28556751 + BLOR05108 Blo12g01089 68350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01089 502 PANTHER CYCLINS 50 470 IPR039361 -
Blo12g01089 502 Pfam Cyclin, N-terminal domain 223 350 IPR006671 -
Blo12g01089 502 Gene3D - 223 467 - -
Blo12g01089 502 Gene3D - 237 350 - -
Blo12g01089 502 Pfam Cyclin, C-terminal domain 352 469 IPR004367 -
Blo12g01089 502 PIRSF Cyclin_A_B_D_E 28 486 IPR039361 -
Blo12g01089 502 SUPERFAMILY Cyclin-like 351 471 IPR036915 -
Blo12g01089 502 CDD CYCLIN 350 434 IPR013763 -
Blo12g01089 502 SMART Cyclin_C_2 352 472 IPR004367 -
Blo12g01089 502 CDD CYCLIN 253 342 IPR013763 -
Blo12g01089 502 SUPERFAMILY Cyclin-like 212 349 IPR036915 -
Blo12g01089 502 PANTHER CYCLIN-A2-4 50 470 - -
Blo12g01089 502 SMART cyclin_7 356 444 IPR013763 -
Blo12g01089 502 SMART cyclin_7 259 343 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00966 Blo-Chr11:21844441 Blo12g01089 Blo-Chr12:28551756 1.16E-15 dispersed
Blo12g00976 Blo-Chr12:27814784 Blo12g01089 Blo-Chr12:28551756 4.30E-95 dispersed
Blo18g00748 Blo-Chr18:20206142 Blo12g01089 Blo-Chr12:28551756 5.44E-52 dispersed
Blo01g01368 Blo-Chr1:51874898 Blo12g01089 Blo-Chr12:28551756 2.70E-123 transposed
Blo05g00111 Blo-Chr5:1047779 Blo12g01089 Blo-Chr12:28551756 7.48E-134 transposed
Blo05g00857 Blo-Chr5:31001401 Blo12g01089 Blo-Chr12:28551756 2.92E-105 transposed
Blo18g00177 Blo-Chr18:1706331 Blo12g01089 Blo-Chr12:28551756 3.09E-103 transposed
Blo01g01366 Blo-Chr1:51846880 Blo12g01089 Blo-Chr12:28551756 5.14E-58 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01089 K06627 - pvy:116133096 564.688