Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01103 ATGGACTTCATGGCCGGCTTCCCTAACAACGCCGATCGACAGATGGCTCTCCAGGAAGCTGCGTCTCAAGGTTTGAAGAGCATGGAACACCTGATCTACGCCCTTTCTCAGAAGCAGCAGTACAATCACTCCGATTGCAACGATCTCACCGACGCTACGGTTTCCAAGTTCAACAAAGTTATTTCTCTTCTCAACCGGACCGGCCACGCGCGCTTCAGGCGCGCTCCCCTTCTCTCTCCTTCCTCATCGTCCACCTCCTCTGCCTCTCTCTCCCAGACTTTGAGCCTCGCCCCGACTACTTTCACTTCTCCCTCAACTCTCTTAAACGCTCCTATTGCGCCTCCGGCGAGCTTCGTTCAGCCCCAGCCGCTGCAAAGCATGACTCTTGATTTCACCAAACCTAATGTTTTAAGTTCAAATGTCAAGAATAACGACCTCGAGTTCACCAAAGACAGCTTCAGCGTCTCGTCAAGTTCCTCGTTCATGTCGTCGGCCATCACCGGAGACGGGAGCGTGTCAAATGGAAAGCTCGGACCTTCGATCTTCCTATCCTCCACACCAGCAGTCTCCGCGGGAAAGCCACCTCTCTCAGCGGTGCCCTACAAGAAGAGTTGCCACGAGCACTCGCAGTCTCATTCCCACTCCTACTCCCACTCCCATTCCCACTCCTACTCCCACTCGGAAAACGTCTCCGGAAAACTTTCCGGTTCTACTTCCGCTTCCGGCAAGTGCCACTGCTCCAAAAGAAGGAAAAATCGTTTAAAGAAAACAATAAGAGTCCCGGCGGTGAGTTCAAAGATCGCCGACATTCCGCCGGACGAGTATTCGTGGAGAAAATACGGGCAGAAGCCGATCAAAGGGTCGCCATTCCCACGGGGATACTACAAGTGCAGTACGGTGAGGGGATGCCCGGCGAGGAAACACGTAGAAAGGGCTCCGGATGACCCGAAGATGCTAATCGTAACGTACGAGGGAGAGCACCGACATACGCAGGGGGCGATGCAGGAGAACATGGGGGGAGGAGGTGGGGTGGTATTCGAGTCAACGTGA 1050 54.29 MDFMAGFPNNADRQMALQEAASQGLKSMEHLIYALSQKQQYNHSDCNDLTDATVSKFNKVISLLNRTGHARFRRAPLLSPSSSSTSSASLSQTLSLAPTTFTSPSTLLNAPIAPPASFVQPQPLQSMTLDFTKPNVLSSNVKNNDLEFTKDSFSVSSSSSFMSSAITGDGSVSNGKLGPSIFLSSTPAVSAGKPPLSAVPYKKSCHEHSQSHSHSYSHSHSHSYSHSENVSGKLSGSTSASGKCHCSKRRKNRLKKTIRVPAVSSKIADIPPDEYSWRKYGQKPIKGSPFPRGYYKCSTVRGCPARKHVERAPDDPKMLIVTYEGEHRHTQGAMQENMGGGGGVVFEST 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28710504 28712198 - BLOR05122 Blo12g01103 68364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01103 349 SUPERFAMILY WRKY DNA-binding domain 269 330 IPR036576 GO:0003700|GO:0006355|GO:0043565
Blo12g01103 349 Gene3D WRKY domain 255 332 IPR036576 GO:0003700|GO:0006355|GO:0043565
Blo12g01103 349 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 13 345 IPR044810 GO:0003700
Blo12g01103 349 MobiDBLite consensus disorder prediction 189 253 - -
Blo12g01103 349 Pfam Plant zinc cluster domain 220 269 IPR018872 -
Blo12g01103 349 ProSiteProfiles WRKY domain profile. 266 332 IPR003657 GO:0003700|GO:0006355|GO:0043565
Blo12g01103 349 PANTHER WRKY PROTEIN 13 345 - -
Blo12g01103 349 MobiDBLite consensus disorder prediction 216 243 - -
Blo12g01103 349 Pfam WRKY DNA -binding domain 273 329 IPR003657 GO:0003700|GO:0006355|GO:0043565
Blo12g01103 349 SMART WRKY_cls 271 331 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g01103 Blo-Chr12:28710504 Blo16g00826 Blo-Chr16:34631010 8.29E-82 dispersed
Blo01g01339 Blo-Chr1:51012480 Blo12g01103 Blo-Chr12:28710504 1.12E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13099 PF03106 WRKY 5.90E-26 CL0274 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01103 - - bhj:120087087 434.106