Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01105 ATGAAATTTGTACTACTCTTTGAGGAGGCATATTTTTGTATATCATATAGGGATGAGTCATCTTTGATTTGGATTTCAAGGGGTGGCGAAAAAAATCTGAAGCTTGCTTCTGTATCTAGAATCATTCCTGGACAGAGAACTGTGGTTTTTCAACGATATTTGCGCCCTGAAAAGGAATATTTGTCTTTCTCTCTTATATACAATAACGGAAAGCGATCCCTTGATTTGATTTGCAAGGACAAAGTTGAAGCAGAGGTTTGGATTGCAGGGCTCAAATCATTAATAGCATCTGGTCAAGGTGGGCGTTCCAAAATTGATGGATGGAATGATGGAGGCTTCTACCTCGATGACAGCAGTGACATGACTTCAAACAGCCCGAGTGACTGTTCAAATAGTGTCAATAGAGATATTTGCTCTCCGGAGGTCTCTGCTAATTTCAACCCAAACAAATCGCCTAAGATTATCAAACCTGAGAATTCTGTAATTGCTGAAAGGTCACATGCAGTTTCAAACCAGACAAATATGCAAGCAAAAGGATCCAGTTCAGATGCTTTTCGTGTCAGTATTTCAAGTGCTCCGAGTTCTTCTAGTCATGGTTCTGTACCGGATGATTATGATGCTCTAGGGGATGTATACATATGGGGAGAGGTCATTAGTGATAACTTGGTGAAGTTTTCAGCTGAAAAAAATTCTAATTGCTCGAGCCTAAGGGTTGATGTACTTCTCCCCAGGCTATTAGAATCCAATGTAGTTTTAGATGTAGTTCATATAGCTTGTGGGGTTAGGCATGCTGCCGTAGTCACGAGGCAAGGCGAAATCTTTACATGGGGAGAGGAATCTGGTGGAAGGCTTGGGCATGGTGTGGGGAAGGATTACATTCAACCTCATCTAGTTGAATCTTTGGCAACTACTAATATTGATTTTGTTGCATGTGGAGAGTTCCATTCTTGTGCTGTTACAATGGATGGGGAACTTTACACATGGGGAGATGGTACTCATAAGGCTGGGCTTCTTGGTCATGGCACTGACGTGAGCCATTGGATGCCAAAGCGTATTGCAGGTCCCCTTGAGGGGCTTCAGGTTGCTTCAGTGGCATGTGGTCCATGGCACACTGCTTTGGTGACATCAATGGGGCAGCTTTTTACATTTGGTGATGGTACGTTTGGGGTGTTGGGCCATGGAGACAGAGAAAATGTTTCATATCCAAGAGAAGTGGAGTCTTTGTCAGGCCTGAGAACAATTGCAGTTGCATGTGGGGTGTGGCATACTGCTGCCGCAGTAGAAGTTATTATGACACAATCTAGTGCGAGTGTTTCTTCGGGTAAGTTGTTCACTTGGGGTGATGGAGATAAAAATCGACTAGGGCATGGTGATAAGGACCCTCGGCTTAAGCCTACATGTGTACCGGCATTAATTGATTACAACTTTCATAAAATCGCTTGTGGGCATAGTTTAACAGTTGCCTTGACTATATCTGGACAAGTGGTCACTATGGGAAGTTCTGTTTATGGTCAGCTTGGGAATCCACAGGCTGATGGAAAGCAGCCTTGCTTGGTAGAAGATAAGCTTTTTGGGGAGTCTGTAGAGGAAGTGGCCTGTGGTGCTTATCACGTGTCAGTTCTAACTTCCAAAAATGAGGTTTATACTTGGGGAAAGGGTGCAAATGGGAGGTTGGGCCATGGAGATGTTGAAGATCGCAAAGTTCCAACTTTGGTTGATGTTTTGAAGGATAGACATGTGAAATATATTGCTTGTGGTTCAAACTACACAACTGCAATTTGTCTTCATAAATGGGTGTCAGGTGCTGAGCAGGCACAATGCTCTGCTTGCAGACAAGCTTTTGGTTTTACACGAAAGAGGCACAACTGCTATAATTGTGGCCTTGTCCACTGCCATTCCTGCAGTTCCAAAAAAGCCTTGAATGCTTCTCTAGCTCCTAATCCCTGCAAACCATATCGGGTGTGTGATTCTTGTTATTCTAAATTGATTAAGGTTTCAGATCCTAATATTAATAATAGAAGAGGCGCCATGCCACGCCTCTCTGGGGAAAATAAGGACAGGTTAGATAAGAGTGAGATAAGATTGTCAAAGTCCGTGCCTTCTAACATGGAGTTAATAAAGCAATTAGATAGTAAAGCAGCCAAGCATGGAAAGAAGTCAGATACCTTCTCCCTTGGTCGTGCTTCTCAAGCTCCTTCTCTATTGCAACTCAAAGAAGTTGTTTTGTCTACTGCAATTGAATTACGACAACCAGCTCCCAAGCCTATTCTTACAAATTCTGCAATAAGTTCTAGATCTGTATCACCTTTCTATAGAAGACCAAGTCCCCCACGCTCTGCAACTCCTGTTCCAACAGCATCCGGACTCTCTTTCTCTAAGAGTATGGCTGATAGTTTGAAGAAAACCAACGAACTATTGAACCAGGAGGTGGTCAAGTTACGTGCGCAGGCAAGTATATGTTTCGATCCCATAATTGGGAGCCTCAAACATAAGTGTGAACTTCAAGAGCTGGAGCTTCAGAAATCAGCTAGGAGAACACAAGAAGCAATGTCTTTGGCTGCAGAAGAATCTGCAAAATCTAAAGCAGCCAAAGAAGTCATCAAGTCTCTTACATCGCAGCTTAAAAAAATAGCGGAGAGACTACCATCTGGAAGTTATGACATGGAAAGCATGAGAATAGTATATCTTCCTAATGGTTCGGATCTAAATGGTATCCATCATTTGGATGCAAATAGAGAACGACATTCAAGATCTGATTCTCTTAGTTCCGTTTCCTTGGTGTCTCCAAGGGCAAGTGACTCTGCCTCTGTAAATGGATTTCAAGTTCAAGCTCATTCATCTCAGGAACAACCTGCGAATGAAACCATGCAGGCAAACCCTGGATCTCTTACTTCTACGGGGATCGAGGAGCTTCCCAATTTTAGACTGACAAATGGCGGGGGTGGATGTCCTACAAGTAATTGTAGTGTGTCAGCGGCTGCTGATCAGGAAAATCGGCATGTTCAGGATAGTGAAAACAGTGGGCGATCTAATACTTCTGAGTTAGCTGCCAATTCAAATCAAGTGGAGGCAGAATGGATTGAACAGTACGAACCTGGTGTATATATTACTCTCGTAGCTCTGCGTGATGGAACAAGAGATCTTAAGCGAGTGCGCTTCAGCCGCAGAAGATTTGGAGAGAGTCAAGCTGAGAACTGGTGGTCGGAGAACCGAGAAAAGGTGTATGAGAGATACAACATTCGTGGGTTGGACAAGTCCTCAATTTCCGGGCAGCCTACACGGAGATCAGAGAGACCTATTTTGCCTGCTTCATCAATTGCGACGCAGGGAGAAGCGATGTAA 3342 43.57 MKFVLLFEEAYFCISYRDESSLIWISRGGEKNLKLASVSRIIPGQRTVVFQRYLRPEKEYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKSLIASGQGGRSKIDGWNDGGFYLDDSSDMTSNSPSDCSNSVNRDICSPEVSANFNPNKSPKIIKPENSVIAERSHAVSNQTNMQAKGSSSDAFRVSISSAPSSSSHGSVPDDYDALGDVYIWGEVISDNLVKFSAEKNSNCSSLRVDVLLPRLLESNVVLDVVHIACGVRHAAVVTRQGEIFTWGEESGGRLGHGVGKDYIQPHLVESLATTNIDFVACGEFHSCAVTMDGELYTWGDGTHKAGLLGHGTDVSHWMPKRIAGPLEGLQVASVACGPWHTALVTSMGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTIAVACGVWHTAAAVEVIMTQSSASVSSGKLFTWGDGDKNRLGHGDKDPRLKPTCVPALIDYNFHKIACGHSLTVALTISGQVVTMGSSVYGQLGNPQADGKQPCLVEDKLFGESVEEVACGAYHVSVLTSKNEVYTWGKGANGRLGHGDVEDRKVPTLVDVLKDRHVKYIACGSNYTTAICLHKWVSGAEQAQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSKKALNASLAPNPCKPYRVCDSCYSKLIKVSDPNINNRRGAMPRLSGENKDRLDKSEIRLSKSVPSNMELIKQLDSKAAKHGKKSDTFSLGRASQAPSLLQLKEVVLSTAIELRQPAPKPILTNSAISSRSVSPFYRRPSPPRSATPVPTASGLSFSKSMADSLKKTNELLNQEVVKLRAQASICFDPIIGSLKHKCELQELELQKSARRTQEAMSLAAEESAKSKAAKEVIKSLTSQLKKIAERLPSGSYDMESMRIVYLPNGSDLNGIHHLDANRERHSRSDSLSSVSLVSPRASDSASVNGFQVQAHSSQEQPANETMQANPGSLTSTGIEELPNFRLTNGGGGCPTSNCSVSAAADQENRHVQDSENSGRSNTSELAANSNQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGESQAENWWSENREKVYERYNIRGLDKSSISGQPTRRSERPILPASSIATQGEAM 1113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28741846 28746844 - BLOR05124 Blo12g01105 68366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01105 1113 Pfam Regulator of chromosome condensation (RCC1) repeat 492 540 IPR000408 -
Blo12g01105 1113 Pfam Regulator of chromosome condensation (RCC1) repeat 271 319 IPR000408 -
Blo12g01105 1113 Pfam Regulator of chromosome condensation (RCC1) repeat 322 373 IPR000408 -
Blo12g01105 1113 Pfam Regulator of chromosome condensation (RCC1) repeat 546 593 IPR000408 -
Blo12g01105 1113 Pfam Regulator of chromosome condensation (RCC1) repeat 440 489 IPR000408 -
Blo12g01105 1113 Pfam Regulator of chromosome condensation (RCC1) repeat 378 425 IPR000408 -
Blo12g01105 1113 ProSiteProfiles PH domain profile. 1 96 IPR001849 -
Blo12g01105 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 378 429 IPR000408 -
Blo12g01105 1113 Gene3D - 430 602 IPR009091 -
Blo12g01105 1113 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 601 663 IPR017455 -
Blo12g01105 1113 Coils Coil 796 816 - -
Blo12g01105 1113 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 364 374 IPR000408 -
Blo12g01105 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 209 270 IPR000408 -
Blo12g01105 1113 ProSiteProfiles BRX domain profile. 1024 1079 IPR013591 -
Blo12g01105 1113 Pfam Transcription factor regulating root and shoot growth via Pin3 1023 1078 IPR013591 -
Blo12g01105 1113 CDD PH_PLC_plant-like 9 96 - -
Blo12g01105 1113 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 17 1086 - -
Blo12g01105 1113 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 257 267 IPR000408 -
Blo12g01105 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 441 492 IPR000408 -
Blo12g01105 1113 Gene3D - 8 101 IPR011993 -
Blo12g01105 1113 MobiDBLite consensus disorder prediction 1085 1113 - -
Blo12g01105 1113 PRINTS Chromosome condensation regulator RCC1 signature 540 561 IPR000408 -
Blo12g01105 1113 PRINTS Chromosome condensation regulator RCC1 signature 482 500 IPR000408 -
Blo12g01105 1113 PRINTS Chromosome condensation regulator RCC1 signature 273 289 IPR000408 -
Blo12g01105 1113 PRINTS Chromosome condensation regulator RCC1 signature 364 380 IPR000408 -
Blo12g01105 1113 PRINTS Chromosome condensation regulator RCC1 signature 380 394 IPR000408 -
Blo12g01105 1113 PRINTS Chromosome condensation regulator RCC1 signature 254 267 IPR000408 -
Blo12g01105 1113 PRINTS Chromosome condensation regulator RCC1 signature 323 339 IPR000408 -
Blo12g01105 1113 MobiDBLite consensus disorder prediction 767 787 - -
Blo12g01105 1113 MobiDBLite consensus disorder prediction 995 1017 - -
Blo12g01105 1113 Gene3D - 153 429 IPR009091 -
Blo12g01105 1113 Pfam Transcription factor BRX N-terminal domain 855 888 IPR027988 -
Blo12g01105 1113 SMART fyve_4 595 664 IPR000306 GO:0046872
Blo12g01105 1113 SUPERFAMILY PH domain-like 16 95 - -
Blo12g01105 1113 MobiDBLite consensus disorder prediction 920 959 - -
Blo12g01105 1113 Pfam FYVE zinc finger 597 662 IPR000306 GO:0046872
Blo12g01105 1113 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 17 1086 - -
Blo12g01105 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 377 IPR000408 -
Blo12g01105 1113 Coils Coil 860 880 - -
Blo12g01105 1113 MobiDBLite consensus disorder prediction 912 959 - -
Blo12g01105 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 545 596 IPR000408 -
Blo12g01105 1113 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 603 672 IPR013083 -
Blo12g01105 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 493 544 IPR000408 -
Blo12g01105 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 271 322 IPR000408 -
Blo12g01105 1113 SUPERFAMILY FYVE/PHD zinc finger 597 668 IPR011011 -
Blo12g01105 1113 SUPERFAMILY RCC1/BLIP-II 208 598 IPR009091 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01105 - - - tcc:18592573 1615.9
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo12g01105 Blo17g00217 CCT
Blo12g01105 Blo18g00216 CCT
Blo01g01332 Blo12g01105 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g01105 Blo-Chr12:28741846 Blo18g00216 Blo-Chr18:2122330 0 dispersed
Blo01g01332 Blo-Chr1:50868512 Blo12g01105 Blo-Chr12:28741846 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g01105 Blo_Chr12 FPKM 0.147386 0.0 0.079003 0.0 0.155508 0.096938 0.298215 0.480978 0.517961 0.377997