Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01107 ATGGAGGTGCTCCATAAAACTTCCTTTGATGACTACGTAACAGTGGATCCAAAGAAATACACCCTGAGTCTGAATGGAAGAAAGGCGTTGAATTTGGAAGAAAAACGGAAGCTGGGTGGAGGCTATAATTCGTTGCTTCAAACCTCTCTTCCCGAAACGATGAGAATCTACAACCCACGCGTAGAAACAGCGGATTCTTCTCATCAAGCTTTCACAACAGCTTTCCCGCGAGGGTTTGCGCTTGAAATTGTCGAGGTTTATTCAGGTCCGCCATCGATTGTTTACAAATTCAGGCATTGGGGCTTCATGGAAGGCCCGTTCAAAGGCCATCCTCCAACCGGGAAGAAAGTTGAGCTTTTCGGAATCGCCATTTTCAAGGTGGACGAGAAGGAGAAAATAGTGAAGGTGGAGTTCTTTTATGACCCGGTTGAATTGCTTGGAGGTCTTGTCAAAGCAGGAAAGTACCCGCGAGACAGCCCTGTAAAGTTTCGAGGAGATTCAGGAACCAAAGATGGGAGTTCCACCATACCACCAGCTGATCTTTTGGGCGGTTTCTACGATTCTGGAAACAACATGAAATTTACCTTCCCCACAGCTTATACTATTACTCTTTTGAGTTGGAGTGTGATCGAATATCACCAAAAATATGAAGCAATTGACGAGATTGTTCATGTCAAAGATATAATCAGATGGGGCACTGATTATTTGCTCAAAGTGTTTGTTCCATCGAATGGAACCTCCGATCAAACTATAATCTACTCTCAGGCACGTTATGTTGGAAGCGCTAATAACGAGAGTAAAGTTCCTAATGATATCTGCTGGCAGAGACCGGAAGACATGGATTATCAGAGACTTGTTTCCAAATGTGACGCTAAGGCCTCAGATTTGGCCGGAGAAATCGTTGCTGCATTATCGGCTGCATCGTTAGTATTTAGAGAAGATGAAAACTACGCCCAAAAATTAACAGGAGCTGCAGAGAAGTTGTTTGAACTGGCCATCAATGAAGACGACGATCAAAAGGGAACTTACACCATGATTGATTCATGTGGAGGGGAAGCAAGAAATTTTTACAACTCAACCGGGTTTGAGGATGAACTGATTTGGGCTGGAACCTGGCTGTTCTTCGCCACCGGGAATGCTTCTTATCTTGCATATTCAACTAACACTGATCGATTAAAGTCGTCGGAGGTCGATGAAAAGAGTTCTGATAAAGGGATCTTCTACTGGAACAACAAGCTCAGTGCAAATGCAGTTTTGCTGACTCGAATTCAATATTTTCAAGATCTTGGCTACCCTTTTGAAAATGCTTTTGACTTATCATCATCCATGACTGATTCCCTCATCTGCTCATATCTTTCTAGTCAATACAGTCGCACTCCAGGCGGATTGATCCTCATGAGGCCTGATGAAGCCTCACTTCAATTTGCTGCAACAACATCATTTATCGTCGCATTATACTCCGATTATCTCTATCTTCTGGGGGAAAATGGCATTCATTGTGGTGATTCTTGGTCTTTTGTGGAAGATTTACAGAACTTTGCCCGGTCTCAGGCAATTGATGAGCTGTTTTCTCAGGTTAATTACATACTAGGAGATAACCCACAGAAAATGAGCTATGTGGCTGGCTATGGAGACAAGTATCCGACCCATATTCATCACAGAGGGGCATCGATCCCATGGGACGGTCAGGCTCACACTTGTGCAGAAGGGGATGGATGGCTTTCGGCAAAGGAGTCAAATCCAAATGTTGTCGTAGGAGCCATGGTTGCAGGGCCGGATAAGCTCGATAATTTCTTCGACGAAAGAGACAAGCCTTGGTTTACGGAGCCAAGCATTGCCGGGAATGCTGGTTTAGTGGCAGCGCTTATTGCCCTCAATGGGATTCCATTTCCTGCTGATCCGTTTGCTTTGAAGGACCGGAACTCGGGCATAGACGAAGATTACATGTTCCGAAAGATCGCTTCCTTTCCGAATATGGCTCCTTGA 1986 44.61 MEVLHKTSFDDYVTVDPKKYTLSLNGRKALNLEEKRKLGGGYNSLLQTSLPETMRIYNPRVETADSSHQAFTTAFPRGFALEIVEVYSGPPSIVYKFRHWGFMEGPFKGHPPTGKKVELFGIAIFKVDEKEKIVKVEFFYDPVELLGGLVKAGKYPRDSPVKFRGDSGTKDGSSTIPPADLLGGFYDSGNNMKFTFPTAYTITLLSWSVIEYHQKYEAIDEIVHVKDIIRWGTDYLLKVFVPSNGTSDQTIIYSQARYVGSANNESKVPNDICWQRPEDMDYQRLVSKCDAKASDLAGEIVAALSAASLVFREDENYAQKLTGAAEKLFELAINEDDDQKGTYTMIDSCGGEARNFYNSTGFEDELIWAGTWLFFATGNASYLAYSTNTDRLKSSEVDEKSSDKGIFYWNNKLSANAVLLTRIQYFQDLGYPFENAFDLSSSMTDSLICSYLSSQYSRTPGGLILMRPDEASLQFAATTSFIVALYSDYLYLLGENGIHCGDSWSFVEDLQNFARSQAIDELFSQVNYILGDNPQKMSYVAGYGDKYPTHIHHRGASIPWDGQAHTCAEGDGWLSAKESNPNVVVGAMVAGPDKLDNFFDERDKPWFTEPSIAGNAGLVAALIALNGIPFPADPFALKDRNSGIDEDYMFRKIASFPNMAP 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28760852 28764814 - BLOR05126 Blo12g01107 68368

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01107 661 SUPERFAMILY Six-hairpin glycosidases 151 627 IPR008928 GO:0005975
Blo12g01107 661 Gene3D - 150 632 IPR012341 GO:0005975
Blo12g01107 661 Gene3D - 47 149 - -
Blo12g01107 661 SUPERFAMILY NTF2-like 66 146 IPR032710 -
Blo12g01107 661 Pfam Glycosyl hydrolase family 9 151 622 IPR001701 GO:0004553|GO:0005975
Blo12g01107 661 PANTHER ENDO-1,4-BETA-GLUCANASE 151 653 - -
Blo12g01107 661 PANTHER ENDOGLUCANASE 151 653 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01107 K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] - csv:116405927 639.032
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00270 Blo-Chr3:5590024 Blo12g01107 Blo-Chr12:28760852 9.71E-133 dispersed
Blo07g00992 Blo-Chr7:29438261 Blo12g01107 Blo-Chr12:28760852 9.08E-50 dispersed
Blo07g00993 Blo-Chr7:29442021 Blo12g01107 Blo-Chr12:28760852 7.32E-41 dispersed
Blo10g00234 Blo-Chr10:3181384 Blo12g01107 Blo-Chr12:28760852 3.79E-131 dispersed
Blo12g01107 Blo-Chr12:28760852 Blo02g01148 Blo-Chr2:43037570 1.19E-79 dispersed
Blo12g01107 Blo-Chr12:28760852 Blo02g01182 Blo-Chr2:43508590 7.44E-124 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1227 . Blo12g01107 . Bda03g00032 . . Bma04g00030 . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1435 . . . . . . . . . . . . . . . . . . . Car05g00700 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011121 1 0 1 1 0 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g01107 Blo_Chr12 FPKM 20.294958 21.61183 29.374022 28.887352 22.214443 26.55397 24.319471 17.611679 17.276228 17.483093