Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01108 ATGTCCAACTATCTTTCATCCCTACTCCACCGCTGCAAGTTTTCAACTTTACGACCAGATTCAAGCCTGACGACTCGAAATGTTGAAGATATTTTTATTGCAGAGAATAAGATATATTCCGATCTTTGCCGTGCATGTATTCGACAATGCAGGATGATCAAGGCCCACCATCTGTATGATGAAAAGCTTCAGAGAGTGGCTCAAGCTTTTAGAACGGCCAAGGTCGTCCATGCCAAGGGATTGAAATTTGGGATTGCTTCAAAAGGGTTGCTAGGAAATGCCATTTTTGACTTTTATGCCAAGTGCGGGAATAGGGAATTGGCAGAGAATGTGTTTGTTCGGCTTGAGAAGAGAGATGTGTTTGCATGGAACTCTCTGCTCTCCATGTACTTAAGGCGTGGATTTCTGAGCCTTGTTTTGCAGTCTTTTGGTTCATTGTTGGCTTGTGAAGTGTTGCCAAATGAATTCACATTTGCAATGGTTTCATCCGCATGTGCAAGTTTGGGAAATATAGACAATGGCAGACAGGTACATTGTGGAGTTATTAAGATGGGGTTGGAGTTCATTTCTTTTTGCCAAGGTGCTCTCATTGATATGTATGCTAAGTGCAATTTTTTAAGCGACGCTCGTCGAATTTTCAATTGTGCAGTATACTTGGACACAGTTTCTTGGACTGCCATGATTGCTGGCTATGTTCAAGTTGGTCAGTCTGAAGAGGCTATCATGGTTTTTGAACAGATGCAAAATCTTGGCATTGTACCTGATCAAGTGGCAATTGTAACTGTTATAAATGCTTATGTTTCTCTTGGAAGGCTTGCCACTGCTCGTGCGTTGTTTGCTGAGCTTCCAAACCCAAACGTTGTTGCTTGGAATGTGATGATTTCAGGGCATGCCAAGGGAGAAGAAGAGGAGGAAGCTATTTCATTTTTTCTAAGAATGAGAAAAGCTGGAATCAGATCTACTAGATCTACTCTAGGAAGTGTTTTAAGTGCCATCGCCAATTTATCGTTCTTCCACTATGGCTTACTGGTTCACGCCGAGGCAATTAAAGAAGGGTTGGATTCCAATGTCTATGTTGGAAGTTCTTTGGTGAATATGTATGCCAAATGCTGTAAAATGAATGAGGCGAAAGTGGTTTTTGATTGTTTAAGCGATAAGAACCTCGTCTTGTGGAATGCAATGCTTGGAGGTTACATACAGAACGGGAAAGTGCGCGAAGTCATTGAATTGTTCTTTCACATGATGAAATTCGGTCCTCCTCCCGACAAATATACGTATACTAGTGCCTTTAGTGCGTGTGCTTCTTTGGAATATCATGAAAGGGGTCGACAACTTCATACGGTAGTAATAAAGAACGAAATCGCATCAAATTTATTTGTCGGAAATGCGTTGATAGATATGTATTCAAAGTCGGGAGCTCTGGAACAAGCTAGAAAACATTTCGAATCGATGCAGAATCACGACAGTATTTCTTGGAATTCGATTATTGTAGGGTATGTGCAGGAGGAGGAGGAGGAAGAAGCATTCTTCATGTTCAAAAGGATGAATTCAAATGGGATTTTGCCAGATGAGGTGTCTTTGGCTAGCATACTCAGTGCTTGTGCGAATGTTAAAGCATTGGAGCAGGGCCAGCAAATCCACTGCATAGCACTCAAAGCGGGATTAGAAACGAGCATTTATGTAGGAAGCTCCCTTATCGACATGTATAGCAAATCCGGAGGCATCGAAGCTGCTCGTAAAGTTTTTTCTTCCATGCCTTTCCTCTCAGTTGTCTCGATGAACGCTCTAATGGCTGGGTATACTCAAGGAAACTTGGAAGAAACACTGAAGCTCTTTCGAGCAATGCAAGAAACAGAAATAAAACCGACAGATGTTACTTTCAGTATCCTTTTAGATTCATGCAGTGGAGTGGATTTGCTGTCATTGGGTAAGCAAATCCACTCTTTAGTTCTTAAGTGGGGCCTTTTATATGTTAGTGATATGTTGGATGTGTCTCTATTGAGTATGTATATAAACTACCAGAGGAAAAAAGAGGCAGGTGTTATTTTCTCAGAGTTGCCATATCCGAAGAGCAGAGTATTATGGACTGCCATGGTTTCAGGATTTGCTCAAAATAATTGCTGTAGGGAGGCTCATAGATATTATCAAGGCATGCGGGCCGAGAATCTCGTACCGGACCAAGCCACGTTTGCCAGCATTCTTCGAGCATGTGCTGTATTAGCTTCATTGACGAATGGAAGGGAAGTGCATTCGGTTATTTTTCGCACTGGGTTTGACTTGGACGAATTAACATGCAGTGCTCTTGTAGACATGTACGCAAAATGCGGGGATGTAAGAAGTTCAATGCGGGTTTTCGAAGAAATGCATAGCAAGAACGATGTGATTTCTTGGAACTCGATGATAGTCGGGCTAGCCAAGAATGGATATGCGGAAAATGCGCTTAAGATCTTTGAAGAGATGGATAGATCAAATGTTTTGGCAGATGAAGTCACGTTCCTTGGGGTCCTTAATGCTTGTAGTCATGCAGGGAAAGTTTTCGAAGGCCGACAAATCTTCGACTCCATGGTTAACCATTACGGAATTCTTCCACGGAACGATCATAATGCATGCATGGTTGATCTTCTTGGACGGTGGGGATTTCTCAAAGAAGCTTGGGATTTCATCGCGGGACTACATATCAAAGCAGATGCTATGGTATGGGCAGCATTTCTTGGAGCGTGCAGAATACATGGAGACGAAGAGAGAGGGAGACATGCAGCTGAGAAACTGATCGAATTGCAACCCGAGAATTCATCCTCTCACATTCTTCTTCGGAATATATGTGCAGAATCAGGAAACTGGGAGGGAGCAGACAGTGTGAGGAGGAAGATGGTGGAAACAGGAGTGAAAAAAGTGGCTGGACGTAGCTGGATGTATTCTGCTGGCGGAGGACCAGACTGA 2940 42.79 MSNYLSSLLHRCKFSTLRPDSSLTTRNVEDIFIAENKIYSDLCRACIRQCRMIKAHHLYDEKLQRVAQAFRTAKVVHAKGLKFGIASKGLLGNAIFDFYAKCGNRELAENVFVRLEKRDVFAWNSLLSMYLRRGFLSLVLQSFGSLLACEVLPNEFTFAMVSSACASLGNIDNGRQVHCGVIKMGLEFISFCQGALIDMYAKCNFLSDARRIFNCAVYLDTVSWTAMIAGYVQVGQSEEAIMVFEQMQNLGIVPDQVAIVTVINAYVSLGRLATARALFAELPNPNVVAWNVMISGHAKGEEEEEAISFFLRMRKAGIRSTRSTLGSVLSAIANLSFFHYGLLVHAEAIKEGLDSNVYVGSSLVNMYAKCCKMNEAKVVFDCLSDKNLVLWNAMLGGYIQNGKVREVIELFFHMMKFGPPPDKYTYTSAFSACASLEYHERGRQLHTVVIKNEIASNLFVGNALIDMYSKSGALEQARKHFESMQNHDSISWNSIIVGYVQEEEEEEAFFMFKRMNSNGILPDEVSLASILSACANVKALEQGQQIHCIALKAGLETSIYVGSSLIDMYSKSGGIEAARKVFSSMPFLSVVSMNALMAGYTQGNLEETLKLFRAMQETEIKPTDVTFSILLDSCSGVDLLSLGKQIHSLVLKWGLLYVSDMLDVSLLSMYINYQRKKEAGVIFSELPYPKSRVLWTAMVSGFAQNNCCREAHRYYQGMRAENLVPDQATFASILRACAVLASLTNGREVHSVIFRTGFDLDELTCSALVDMYAKCGDVRSSMRVFEEMHSKNDVISWNSMIVGLAKNGYAENALKIFEEMDRSNVLADEVTFLGVLNACSHAGKVFEGRQIFDSMVNHYGILPRNDHNACMVDLLGRWGFLKEAWDFIAGLHIKADAMVWAAFLGACRIHGDEERGRHAAEKLIELQPENSSSHILLRNICAESGNWEGADSVRRKMVETGVKKVAGRSWMYSAGGGPD 979
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28765729 28768668 + BLOR05127 Blo12g01108 68369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01108 979 Gene3D Tetratricopeptide repeat domain 546 641 IPR011990 GO:0005515
Blo12g01108 979 Gene3D Tetratricopeptide repeat domain 662 741 IPR011990 GO:0005515
Blo12g01108 979 Gene3D Tetratricopeptide repeat domain 337 439 IPR011990 GO:0005515
Blo12g01108 979 PANTHER OSJNBB0070J16.5 PROTEIN 268 487 - -
Blo12g01108 979 SUPERFAMILY TPR-like 231 960 IPR011990 GO:0005515
Blo12g01108 979 PANTHER OSJNBB0070J16.5 PROTEIN 79 204 - -
Blo12g01108 979 PANTHER OS07G0578800 PROTEIN-RELATED 586 658 IPR045215 GO:0003723|GO:0009451
Blo12g01108 979 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 488 522 IPR002885 -
Blo12g01108 979 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 691 725 IPR002885 -
Blo12g01108 979 Pfam E motif 910 971 IPR046848 -
Blo12g01108 979 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Blo12g01108 979 PANTHER OS07G0578800 PROTEIN-RELATED 268 487 IPR045215 GO:0003723|GO:0009451
Blo12g01108 979 PANTHER OS07G0578800 PROTEIN-RELATED 79 204 IPR045215 GO:0003723|GO:0009451
Blo12g01108 979 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Blo12g01108 979 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 793 827 IPR002885 -
Blo12g01108 979 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 761 791 IPR002885 -
Blo12g01108 979 PANTHER OS07G0578800 PROTEIN-RELATED 664 754 IPR045215 GO:0003723|GO:0009451
Blo12g01108 979 PANTHER OS07G0578800 PROTEIN-RELATED 757 972 IPR045215 GO:0003723|GO:0009451
Blo12g01108 979 PANTHER OS07G0578800 PROTEIN-RELATED 484 585 IPR045215 GO:0003723|GO:0009451
Blo12g01108 979 TIGRFAM PPR: pentatricopeptide repeat domain 490 524 IPR002885 -
Blo12g01108 979 TIGRFAM PPR: pentatricopeptide repeat domain 795 828 IPR002885 -
Blo12g01108 979 TIGRFAM PPR: pentatricopeptide repeat domain 693 726 IPR002885 -
Blo12g01108 979 TIGRFAM PPR: pentatricopeptide repeat domain 764 791 IPR002885 -
Blo12g01108 979 TIGRFAM PPR: pentatricopeptide repeat domain 222 255 IPR002885 -
Blo12g01108 979 TIGRFAM PPR: pentatricopeptide repeat domain 389 422 IPR002885 -
Blo12g01108 979 TIGRFAM PPR: pentatricopeptide repeat domain 288 319 IPR002885 -
Blo12g01108 979 PANTHER OSJNBB0070J16.5 PROTEIN 195 269 - -
Blo12g01108 979 Pfam PPR repeat 693 722 IPR002885 -
Blo12g01108 979 Pfam PPR repeat 764 792 IPR002885 -
Blo12g01108 979 Pfam PPR repeat 563 585 IPR002885 -
Blo12g01108 979 Pfam PPR repeat 462 487 IPR002885 -
Blo12g01108 979 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 119 153 IPR002885 -
Blo12g01108 979 Gene3D Tetratricopeptide repeat domain 184 336 IPR011990 GO:0005515
Blo12g01108 979 Gene3D Tetratricopeptide repeat domain 440 545 IPR011990 GO:0005515
Blo12g01108 979 Gene3D Tetratricopeptide repeat domain 35 183 IPR011990 GO:0005515
Blo12g01108 979 Gene3D Tetratricopeptide repeat domain 742 857 IPR011990 GO:0005515
Blo12g01108 979 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
Blo12g01108 979 Pfam PPR repeat family 285 333 IPR002885 -
Blo12g01108 979 Pfam PPR repeat family 589 634 IPR002885 -
Blo12g01108 979 Pfam PPR repeat family 386 434 IPR002885 -
Blo12g01108 979 Pfam PPR repeat family 220 267 IPR002885 -
Blo12g01108 979 Pfam PPR repeat family 488 536 IPR002885 -
Blo12g01108 979 Pfam PPR repeat family 793 840 IPR002885 -
Blo12g01108 979 PANTHER OS07G0578800 PROTEIN-RELATED 195 269 IPR045215 GO:0003723|GO:0009451
Blo12g01108 979 PANTHER OSJNBB0070J16.5 PROTEIN 664 754 - -
Blo12g01108 979 PANTHER OSJNBB0070J16.5 PROTEIN 757 972 - -
Blo12g01108 979 PANTHER OSJNBB0070J16.5 PROTEIN 484 585 - -
Blo12g01108 979 PANTHER OSJNBB0070J16.5 PROTEIN 586 658 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01108 - - - qsu:112003365 1229.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g01108 Blo-Chr12:28765729 Blo16g00499 Blo-Chr16:19857633 1.06E-86 dispersed
Blo12g01108 Blo-Chr12:28765729 Blo08g00213 Blo-Chr8:2487371 1.71E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1213 . Blo12g01108 . Bda03g00030 . Bpe04g00020 Bma04g00028 . . Cmo12g00334 . Cma09g01089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g01097 . . . Car09g00987 . . Bhi09g01512 . . . . . . Cla09g00917 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011120 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 0 1 1 3 1 0 1 0 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g01108 Blo_Chr12 FPKM 2.725 0.0 1.62596 2.02039 7.983646 0.0 10.201216 1.314686 2.289892 0.0