Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01109 ATGGCAATGGAGAATCTGCAAATCAGCACTCTGTATGCTACTGCCAGAGCCGGTGCTCCTCAGCGTTTCCATTCATTTTCGTCGAAGGACAGGTTTAATCTTCCTAAATACACAGGATTGAAGAACCCTATTTTGTCATTTTCCTCCTCTCCATCTTCCTCTGCTCCATTTTTCTCTTCCTCGAGTAGAAAATCCAGGGTCTCCTGCAAAGCTCGCGAGGCCGTTGATGAAGTTCGAGAGGTGACAGATTCAAGCTGGAACGAGCTAGTGATCGGAAACGAGAGCATGGTGCTGGTGGACTTCTGGGCGCCGTGGTGTGGACCTTGCAGAATGATAGCGCCGGTGATTGAGGAGTTGGCAAAAGAATACGGTGGCAAAATTGCATGTTTCAAGCTCAACACAGACGACTGTCCAACCATTGCCACCCAGTATGGAATCAGGAGCATACCCACTGTGCTTTTCTTCAAGAACGGACAGAAGAAAGAGAGCGTGATTGGGGCTGTGCCTAAGTCCACCTTGTCTGCCTCCATTGACAAGTATTTGGAGCTGTAG 552 48.91 MAMENLQISTLYATARAGAPQRFHSFSSKDRFNLPKYTGLKNPILSFSSSPSSSAPFFSSSSRKSRVSCKAREAVDEVREVTDSSWNELVIGNESMVLVDFWAPWCGPCRMIAPVIEELAKEYGGKIACFKLNTDDCPTIATQYGIRSIPTVLFFKNGQKKESVIGAVPKSTLSASIDKYLEL 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28769175 28769805 - BLOR05128 Blo12g01109 68370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01109 183 Gene3D Glutaredoxin 77 182 - -
Blo12g01109 183 ProSiteProfiles Thioredoxin domain profile. 49 182 IPR013766 -
Blo12g01109 183 PANTHER GEO12009P1 27 181 - -
Blo12g01109 183 Pfam Thioredoxin 78 179 IPR013766 -
Blo12g01109 183 PRINTS Thioredoxin family signature 97 105 - -
Blo12g01109 183 PRINTS Thioredoxin family signature 105 114 - -
Blo12g01109 183 PRINTS Thioredoxin family signature 145 156 - -
Blo12g01109 183 CDD TRX_family 84 178 - -
Blo12g01109 183 SUPERFAMILY Thioredoxin-like 69 182 IPR036249 -
Blo12g01109 183 PANTHER THIOREDOXIN M-TYPE PROTEIN 27 181 - -
Blo12g01109 183 ProSitePatterns Thioredoxin family active site. 98 116 IPR017937 -
Blo12g01109 183 TIGRFAM thioredoxin: thioredoxin 82 179 IPR005746 GO:0015035
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01109 K03671 trxA; thioredoxin 1 - vvi:100264263 238.424
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01324 Blo12g01109 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00947 Blo-Chr7:28764912 Blo12g01109 Blo-Chr12:28769175 2.98E-45 dispersed
Blo10g00775 Blo-Chr10:24226643 Blo12g01109 Blo-Chr12:28769175 1.57E-50 dispersed
Blo12g00783 Blo-Chr12:26236149 Blo12g01109 Blo-Chr12:28769175 4.87E-16 dispersed
Blo12g01109 Blo-Chr12:28769175 Blo17g00782 Blo-Chr17:25001885 1.30E-17 dispersed
Blo19g00375 Blo-Chr19:23720940 Blo12g01109 Blo-Chr12:28769175 2.92E-13 dispersed
Blo04g00006 Blo-Chr4:69809 Blo12g01109 Blo-Chr12:28769175 3.20E-20 transposed
Blo04g00487 Blo-Chr4:4036919 Blo12g01109 Blo-Chr12:28769175 2.73E-33 transposed
Blo01g01324 Blo-Chr1:50581288 Blo12g01109 Blo-Chr12:28769175 9.12E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1199 Blo01g01324 Blo12g01109 . Bda03g00029 . Bpe04g00019 . . Cmo04g02534 Cmo15g00640 . . . . Sed11g1319 . Cpe13g00660 Bhi04g01828 Tan11g1203 Cmetu01g1872 . Hepe02g2753 . Lcy10g1305 Cla08g00654 Cam08g1084 Cec08g0670 Cco08g0779 Clacu08g0788 . Cre08g0593 . . Cone17ag0803 Cone20ag0407 . . . Cme03g00422 . . . . . . . . . . . . . Car04g02331 Car15g00581 Cpe01g02094 . . . . . . . . . . . . . . . Lsi08g00514 . Chy03g00578 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008381 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g01109 Blo_Chr12 FPKM 4.542635 6.199356 2.112067 3.290411 10.133938 12.118549 11.730556 2.09651 1.76972 2.181457