Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01110 ATGTCTCGGTCGCTGGTGCAGCCCATCGGACAAAAGAGGCTGACGAACGTCGCTGTTGTTCGTTTGAAAAAGCATGGGAATCGCTTTGAGATTGCGTGCTACAAGAACAAGGTTCTCTCTTGGCGCTCCGGGGTAGAGAAGGATTTGGACGAAGTGTTGCAGTCACAGACCGTTTACTCAAATGTTTCCAAAGGAGTTCTTTCCAAATCAAAAGATTTAATTGCAGCTTTTGGGACAGAAGATCAAAGCAAAATTTGTTTGGAGATTTTGGATAAAGGTGAGCTTCAAGTTGCTGGGAAGGAGAGGGAAGCTCAATTGTCCAGCCAGTTTCGAGATATTGCAACCATTGTCATGCAGAAAACCTTCAATCCTGAGACTCAGCGCCCTTATACCATTAGCATGATTGAGCGACTTATGCGTGAAATTCATTTTGCTGTTGATCCACATGGGAGCTCAAAAAAACAGGCTCTCGAAGTCATTCAAGAACTTCAGAAGCTTTTCCCGATCAAGCGCTCACCAATGAGAATAAGATTTACTATACCTGAACAGAAGTCACCTTCACTTCTTGAAAAGCTCAATGACTGGAATGCTACCATTGTGTCCAAAGACCAATCTGGAAGTCAGCTCTCTTTTATCTGTGAATTGGATCCTAGCCTGTATAGAGACTGCAATCCCTTGATGAGCGATCTGCAGGGAAGATTTGAAGTACTCTCATTCTCTCTTCATGAGGAAGGAGAGGTCGAGTATTATGATGATCATGAATACATTCCACAACCAAAACTAAAGGAATCGGCTAATACTGAGACGGAGCTGAGTGAAAAGTTACAGAACCAGACAATCTCAACAAGTGGCAAGAGTGCACAGGCTGAGGGGAAGCGCTGTACCACGTGTAATGTATATTTGAGTGATTCCAGTCAGTTTAGGGAGCACCATAAGAGTGAATGGCACAAGCATAATGTAAAGCGCAAAACCCGAAATCTTTCTCCTCTAACTGAAGAAGAATGCAGAGTGGAATTGGAAGTGGGGGACTCGAGAAAAGACGCTTATAAATCTCCTGCTTTATTCTTAGTAGTGTGCCTTGAGCCTATGCCATTGCCATCCGACTCTTGA 1110 43.78 MSRSLVQPIGQKRLTNVAVVRLKKHGNRFEIACYKNKVLSWRSGVEKDLDEVLQSQTVYSNVSKGVLSKSKDLIAAFGTEDQSKICLEILDKGELQVAGKEREAQLSSQFRDIATIVMQKTFNPETQRPYTISMIERLMREIHFAVDPHGSSKKQALEVIQELQKLFPIKRSPMRIRFTIPEQKSPSLLEKLNDWNATIVSKDQSGSQLSFICELDPSLYRDCNPLMSDLQGRFEVLSFSLHEEGEVEYYDDHEYIPQPKLKESANTETELSEKLQNQTISTSGKSAQAEGKRCTTCNVYLSDSSQFREHHKSEWHKHNVKRKTRNLSPLTEEECRVELEVGDSRKDAYKSPALFLVVCLEPMPLPSDS 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28770429 28772945 - BLOR05129 Blo12g01110 68371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01110 369 PANTHER BNAANNG06530D PROTEIN 1 347 - -
Blo12g01110 369 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Blo12g01110 369 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Blo12g01110 369 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 347 IPR039100 -
Blo12g01110 369 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Blo12g01110 369 Pfam SBDS protein, C-terminal domain 174 238 IPR046928 -
Blo12g01110 369 SUPERFAMILY beta-beta-alpha zinc fingers 286 323 IPR036236 -
Blo12g01110 369 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Blo12g01110 369 ProSitePatterns Zinc finger C2H2 type domain signature. 294 316 IPR013087 -
Blo12g01110 369 SMART ZnF_U1_5 289 323 IPR003604 GO:0003676|GO:0008270
Blo12g01110 369 Gene3D - 174 248 - -
Blo12g01110 369 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 229 IPR002140 GO:0042256
Blo12g01110 369 Gene3D - 100 172 IPR037188 -
Blo12g01110 369 Gene3D - 1 96 IPR036786 -
Blo12g01110 369 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01110 K14574 - csv:101215380 527.324