Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Blo12g01110 | ATGTCTCGGTCGCTGGTGCAGCCCATCGGACAAAAGAGGCTGACGAACGTCGCTGTTGTTCGTTTGAAAAAGCATGGGAATCGCTTTGAGATTGCGTGCTACAAGAACAAGGTTCTCTCTTGGCGCTCCGGGGTAGAGAAGGATTTGGACGAAGTGTTGCAGTCACAGACCGTTTACTCAAATGTTTCCAAAGGAGTTCTTTCCAAATCAAAAGATTTAATTGCAGCTTTTGGGACAGAAGATCAAAGCAAAATTTGTTTGGAGATTTTGGATAAAGGTGAGCTTCAAGTTGCTGGGAAGGAGAGGGAAGCTCAATTGTCCAGCCAGTTTCGAGATATTGCAACCATTGTCATGCAGAAAACCTTCAATCCTGAGACTCAGCGCCCTTATACCATTAGCATGATTGAGCGACTTATGCGTGAAATTCATTTTGCTGTTGATCCACATGGGAGCTCAAAAAAACAGGCTCTCGAAGTCATTCAAGAACTTCAGAAGCTTTTCCCGATCAAGCGCTCACCAATGAGAATAAGATTTACTATACCTGAACAGAAGTCACCTTCACTTCTTGAAAAGCTCAATGACTGGAATGCTACCATTGTGTCCAAAGACCAATCTGGAAGTCAGCTCTCTTTTATCTGTGAATTGGATCCTAGCCTGTATAGAGACTGCAATCCCTTGATGAGCGATCTGCAGGGAAGATTTGAAGTACTCTCATTCTCTCTTCATGAGGAAGGAGAGGTCGAGTATTATGATGATCATGAATACATTCCACAACCAAAACTAAAGGAATCGGCTAATACTGAGACGGAGCTGAGTGAAAAGTTACAGAACCAGACAATCTCAACAAGTGGCAAGAGTGCACAGGCTGAGGGGAAGCGCTGTACCACGTGTAATGTATATTTGAGTGATTCCAGTCAGTTTAGGGAGCACCATAAGAGTGAATGGCACAAGCATAATGTAAAGCGCAAAACCCGAAATCTTTCTCCTCTAACTGAAGAAGAATGCAGAGTGGAATTGGAAGTGGGGGACTCGAGAAAAGACGCTTATAAATCTCCTGCTTTATTCTTAGTAGTGTGCCTTGAGCCTATGCCATTGCCATCCGACTCTTGA | 1110 | 43.78 | MSRSLVQPIGQKRLTNVAVVRLKKHGNRFEIACYKNKVLSWRSGVEKDLDEVLQSQTVYSNVSKGVLSKSKDLIAAFGTEDQSKICLEILDKGELQVAGKEREAQLSSQFRDIATIVMQKTFNPETQRPYTISMIERLMREIHFAVDPHGSSKKQALEVIQELQKLFPIKRSPMRIRFTIPEQKSPSLLEKLNDWNATIVSKDQSGSQLSFICELDPSLYRDCNPLMSDLQGRFEVLSFSLHEEGEVEYYDDHEYIPQPKLKESANTETELSEKLQNQTISTSGKSAQAEGKRCTTCNVYLSDSSQFREHHKSEWHKHNVKRKTRNLSPLTEEECRVELEVGDSRKDAYKSPALFLVVCLEPMPLPSDS | 369 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 28770429 | 28772945 | - | BLOR05129 | Blo12g01110 | 68371 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Blo12g01110 | 369 | PANTHER | BNAANNG06530D PROTEIN | 1 | 347 | - | - | |
Blo12g01110 | 369 | Pfam | SBDS protein, domain II | 111 | 171 | IPR018978 | GO:0042254 | |
Blo12g01110 | 369 | Pfam | Shwachman-Bodian-Diamond syndrome (SBDS) protein | 16 | 102 | IPR019783 | - | |
Blo12g01110 | 369 | PANTHER | RIBOSOME MATURATION PROTEIN SBDS | 1 | 347 | IPR039100 | - | |
Blo12g01110 | 369 | SUPERFAMILY | Hypothetical protein AF0491, middle domain | 98 | 171 | IPR037188 | - | |
Blo12g01110 | 369 | Pfam | SBDS protein, C-terminal domain | 174 | 238 | IPR046928 | - | |
Blo12g01110 | 369 | SUPERFAMILY | beta-beta-alpha zinc fingers | 286 | 323 | IPR036236 | - | |
Blo12g01110 | 369 | SUPERFAMILY | FYSH domain | 13 | 96 | IPR036786 | - | |
Blo12g01110 | 369 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 294 | 316 | IPR013087 | - | |
Blo12g01110 | 369 | SMART | ZnF_U1_5 | 289 | 323 | IPR003604 | GO:0003676|GO:0008270 | |
Blo12g01110 | 369 | Gene3D | - | 174 | 248 | - | - | |
Blo12g01110 | 369 | TIGRFAM | RNA_SBDS: rRNA metabolism protein, SBDS family | 13 | 229 | IPR002140 | GO:0042256 | |
Blo12g01110 | 369 | Gene3D | - | 100 | 172 | IPR037188 | - | |
Blo12g01110 | 369 | Gene3D | - | 1 | 96 | IPR036786 | - | |
Blo12g01110 | 369 | ProSitePatterns | Uncharacterized protein family UPF0023 signature. | 46 | 65 | IPR018023 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Blo12g01110 | K14574 | - | csv:101215380 | 527.324 |