Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01117 ATGGCTTCCCATTCCCGTTTCGCCTCCTCTTCTCCATCTCTTCAACAGAATCTCCACCTTCTTTCTCCTGAACAGATTGAGCTAGCGAAGAAGTTGCTTGAGACCGGACAAAGTCATCTGTTTGCGCATTGGGCTGAGCCCGGTATTGATGATGAGGAAAAGATAACCTTTTTTGACCAGGTGTCTCGTCTTAATTCTAGCTATCCTGGGGGTTTGGGGTCGTATATTAAAAGGGCCAGGGAACTCTTAGCAGATTCAAAAGCAGGAAATAATCCATTTGATGGCTTCACTCCTTCTGTTCCATCCGGTGATGTATTGACATTTGGCGATGATACTTTCATTAATTTTGAGGAGGCTGGTATCAAGGAAGCTCAAAAAGCAGCCTTTGTTCTTGTGGCTGGTGGGCTCGGAGAACGGCTGGGGTACAATGGGATTAAGGTGGCTCTTCCAATGGAAACAACTACAGGAACATGTTTCTTACAGCATTACATTGAGTCTGTTCTTGCTCTTCAAGAAGCTAGCCGTAGAGCTGCAGGAGGTGAACATCAATCAGAGATCCCCTTTGTTATAATGACATCTGATGACACACATGGACGTACTATAGAGCTTTTGGAATTAAATTCTTATTTTGGAATGAAACCAGCGCAAGAGAAAGTTGCATGCTTAGATGATAATGATGCCAGACTAGCAATTGATTTGCATAATAAATACAAAATTCAGACCAAGCCTCATGGCCATGGCGACGTGCATTCACTTCTATACTCGAGCGGCCTTCTAAATACATGGCAATGTTTCATTAATGGCTTTAGGCGTGATGCTGGTTTGAGATGGGTCCTTTTCTTCCAAGATACCAATGGACTTCTCTTTAAGGCAATTCCAGCGGCATTGGGTGTAAGTGCTACGAGACAGTATCATGTCAATTCCCTTGCTGTCCCACGCAAAGCAAAAGAAGCCATTGGAGGAATCACCCGACTAACTCATGCTGACGGGAGAAGTATGGTAATCAATGTGGAATACAATCAGCTTGATCCTCTGCTTAGAGCAACTGGTTTTCCTGATGGTGATGTCAATTGTGAGAGTGGTTTCTCCCCTTTCCCAGGCAACATAAACCAATTGATATTAGAACTTGGTCCTTACATTGAGGAGCTGACAAAAACAGGGGGTGCTATTCAGGAGTTTGTTAATCCAAAATACAAAGACGCCAGTAAAACTTCCTTTAAGTCCTCAACTCGTCTAGAGTGTATGATGCAAGACTATCCCAAAACGTTGCCTCCATCCGCAAGGGTTGGATTCACGGTAATGGATGCATGGCTTGCTTATGCACCTGTAAAGAACAATCCCGAGGACGCAGCTAAGGTGCCAAAGGGAAATCCGTACCATAGTGCTACGTCTGGAGAAATGGCCATATATCGTGCTAACAGCCTTATACTTAGGAAGGCGGGCATCCAAGTAGGTGATCCGGTGGAAGAAGTGTTCAATGGGCAAGAGGTGGAAGTGTGGGCTCGTATCACATGGAGCCCGAAGTGGGGTTGTACTCTGGCAGAGATAAAGGCAAAAGTTAGTGGGAGTTGCTCTATATCCCAAAGGTCTACAATGGTGATCAAAGGCCACAATGTTTTTATCAAGGATCTCTCTTTGGACGGTGCTCTTGTTGCCGAGGCGAATGAAGAAGCCAAGGTGACAGTGGGAGGAGTAGTGCAGAACAAGGGGTGGAGGGTTGAAGAAGTAGATCATAAAGATGGTTGTGTGGCAGAGGAAGTGAGAATAAGGGGTTTTAGGATCAACAAATTGGAAACACAAGAGATGGTTGCTGAAGAAGGAATGAACAATGGAGATGGCATGGAGTGCACTCAACTGGCTAAGCGCTTCAAAAGTGAGATGGTGAATAATGGCATGAAGGATTCCGCTATTTGGAATGGGGCTATGGAAGGAACTTCAGGAACTAGTGATGTTTTTAGAACTTATGAAAGAACTTACGAAAGAAGAAATAAGGCTAAGACAGTTTCGGAGAACAAATGTTCAGATGTTCACATCAAACTTGGGGAAGCAACCAACAAATTGAATGATTCGGTTCATAACTATCTTTCAACCTTAATATTGGTTTCTTTCAACTCCAATACGTCGTTCTTTTCTAATTACGCAATTGGAATCACTTTTTTTTTTTCCGTTTTACGTAATGATTTAGAAGCAAATTTTTATTTCACGTCATTTACAGATGTTAAACTATGCCAAGCTTTGAAACAACCACATAATATATTTGGAGGTGATAACAATCATGAGAACGTTGGGAAAGAGAATTTAGATGACCGTCCACAGAGTCAATGGAGAAATTTTGTGTTGGAACAAATATGTCAGTCCTTGAGTAGTAATGAAGCTGGCATACACCAGTGCGTCCAAGATGGCATCAGTTCTGGTTTTGGAAAGGATTGTTCCACAAACGAAAAGAAATTTGATGGTCATCATAAAGAGAGGCAGAAACACACTCCACATTCTGCATTAGTGTCAAATGGATTCTCTAAGGACGCTAATGTCGAAGTTGGCATTACACCTAAGCAATCATTTCAAATATCCAAAAGGTGTACTTTCACAGATAAGTGTCGGCGAGCTTTATTAAGTGTAGTAGTTTCCCAGAAGTTTACATCTCTATGCAAGCTACTGTTCGAAAATTTCCAAGGAACCAAAACTTCAAGTGTTTTTGACTTTGGAGTGATAAACACAAGGATGAAAGAGGGCGTTTACGAAAATTCTCCAATGCTCTTCACCTCAGACATACAACAGGCAATATGGAGAAAGCTTGAAAGTGTTGGAACAGAATTGATTTCACATGCAATAAGCTTGTCAGATCTGTCCAAGAGTGCCTACCATGAACAGGTGGGAATTCCAGAGCGTGATACAGTTGAAGATGGAAATCATGAGAAAAGTGTCTGGGAATGTAACTCTCACCCAAAAGCAGAGAAAAATGAAGACTCTAGTTTTTATCAATTGTCCTCGTGCCGGCACTGTGGAGAGAAAGCAGACGGCGCAGATTCGTTAGTTTGTGATTCGTGTGAGGAAATGTACCATGTATCTTGCCTTGCACCAGCTGTTAATGAGATTCCTCTTAAAAGTTGGTACTGTGCTAGATGCACTTCTTGCGTGATCAGATCACCACATGATAATTGTGCAGTGTGTTCGAGACTGAATGCCCGAATAAGTATAACTAATGGTGTTGGTGAAATGATACCTGGACATTCGCGCAATCACAAAGAGGCGAATTCAAACTGCAGTACAGACAAAGAACTGTTGGAGGAGAGCAAGACTGTTCTATGTAAGATTTGTGGAAATGACGTGGAAAATGGTGATGAATTCAGAACATGTAGTCATCCATTCTGCCCCAATAAATGTTATCATACCAGGTGCCTTTCCAGTAAGCAGCGAAAATCTTATGGTTCTCGATGGTACTGTCCTTCTTGTCTTTGTCGAGTGTGCTTCATTGATCAAGATGATGATAAGATTGTCCTGTGCGATGGCTGTGATCGTGCTTACCACATATATTGCTTGAAACCCCCATGTACCTCTATTCCTAGAGGGAAATGGTTTTGTAAAAAATGTGATGTAGGTATCCAAGCAATACGCAAGGCAAAAGAGGCTTATGAAAATATTGAAAGTCATAAGAAACGGGGAAATAATGTGCGTATTGCTTATTCTAATCTTGAAGAGAAGCTGAGAAATAAGGTTGAGTCCGAATCCGATAAAGGTAGAGGAGGAATGGACATGCTTCTCACAGCAGCAAAGACTCTTAACTACGAAGAAAATGTAGCTGCAATTCACGCGAAGACCTGA 3822 42.2 MASHSRFASSSPSLQQNLHLLSPEQIELAKKLLETGQSHLFAHWAEPGIDDEEKITFFDQVSRLNSSYPGGLGSYIKRARELLADSKAGNNPFDGFTPSVPSGDVLTFGDDTFINFEEAGIKEAQKAAFVLVAGGLGERLGYNGIKVALPMETTTGTCFLQHYIESVLALQEASRRAAGGEHQSEIPFVIMTSDDTHGRTIELLELNSYFGMKPAQEKVACLDDNDARLAIDLHNKYKIQTKPHGHGDVHSLLYSSGLLNTWQCFINGFRRDAGLRWVLFFQDTNGLLFKAIPAALGVSATRQYHVNSLAVPRKAKEAIGGITRLTHADGRSMVINVEYNQLDPLLRATGFPDGDVNCESGFSPFPGNINQLILELGPYIEELTKTGGAIQEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPPSARVGFTVMDAWLAYAPVKNNPEDAAKVPKGNPYHSATSGEMAIYRANSLILRKAGIQVGDPVEEVFNGQEVEVWARITWSPKWGCTLAEIKAKVSGSCSISQRSTMVIKGHNVFIKDLSLDGALVAEANEEAKVTVGGVVQNKGWRVEEVDHKDGCVAEEVRIRGFRINKLETQEMVAEEGMNNGDGMECTQLAKRFKSEMVNNGMKDSAIWNGAMEGTSGTSDVFRTYERTYERRNKAKTVSENKCSDVHIKLGEATNKLNDSVHNYLSTLILVSFNSNTSFFSNYAIGITFFFSVLRNDLEANFYFTSFTDVKLCQALKQPHNIFGGDNNHENVGKENLDDRPQSQWRNFVLEQICQSLSSNEAGIHQCVQDGISSGFGKDCSTNEKKFDGHHKERQKHTPHSALVSNGFSKDANVEVGITPKQSFQISKRCTFTDKCRRALLSVVVSQKFTSLCKLLFENFQGTKTSSVFDFGVINTRMKEGVYENSPMLFTSDIQQAIWRKLESVGTELISHAISLSDLSKSAYHEQVGIPERDTVEDGNHEKSVWECNSHPKAEKNEDSSFYQLSSCRHCGEKADGADSLVCDSCEEMYHVSCLAPAVNEIPLKSWYCARCTSCVIRSPHDNCAVCSRLNARISITNGVGEMIPGHSRNHKEANSNCSTDKELLEESKTVLCKICGNDVENGDEFRTCSHPFCPNKCYHTRCLSSKQRKSYGSRWYCPSCLCRVCFIDQDDDKIVLCDGCDRAYHIYCLKPPCTSIPRGKWFCKKCDVGIQAIRKAKEAYENIESHKKRGNNVRIAYSNLEEKLRNKVESESDKGRGGMDMLLTAAKTLNYEENVAAIHAKT 1273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28819648 28829998 - BLOR05136 Blo12g01117 68378

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01117 1273 ProSiteProfiles Zinc finger PHD-type profile. 1100 1154 IPR019787 -
Blo12g01117 1273 ProSiteProfiles Zinc finger PHD-type profile. 1150 1200 IPR019787 -
Blo12g01117 1273 ProSitePatterns Zinc finger PHD-type signature. 1148 1197 IPR019786 -
Blo12g01117 1273 ProSiteProfiles Zinc finger PHD-type profile. 995 1045 IPR019787 -
Blo12g01117 1273 PANTHER UDP- GLUCOSE PYROPHOSPHORYLASE 12 590 IPR039741 -
Blo12g01117 1273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1155 1199 IPR013083 -
Blo12g01117 1273 PANTHER UDP-SUGAR PYROPHOSPHORYLASE 12 590 - -
Blo12g01117 1273 CDD UGGPase 127 447 - -
Blo12g01117 1273 SUPERFAMILY Nucleotide-diphospho-sugar transferases 26 557 IPR029044 -
Blo12g01117 1273 SUPERFAMILY FYVE/PHD zinc finger 1152 1201 IPR011011 -
Blo12g01117 1273 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 22 481 IPR029044 -
Blo12g01117 1273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1088 1154 IPR013083 -
Blo12g01117 1273 SUPERFAMILY FYVE/PHD zinc finger 1094 1152 IPR011011 -
Blo12g01117 1273 ProSitePatterns Zinc finger PHD-type signature. 998 1042 IPR019786 -
Blo12g01117 1273 Pfam PHD-finger 1153 1198 IPR019787 -
Blo12g01117 1273 Pfam PHD-finger 998 1045 IPR019787 -
Blo12g01117 1273 SUPERFAMILY FYVE/PHD zinc finger 992 1043 IPR011011 -
Blo12g01117 1273 Gene3D - 483 603 - -
Blo12g01117 1273 SMART PHD_3 997 1043 IPR001965 -
Blo12g01117 1273 SMART PHD_3 1102 1152 IPR001965 -
Blo12g01117 1273 SMART PHD_3 1153 1198 IPR001965 -
Blo12g01117 1273 Gene3D - 918 1045 - -
Blo12g01117 1273 Pfam UTP--glucose-1-phosphate uridylyltransferase 122 261 IPR002618 GO:0070569
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01117 K12447 USP; UDP-sugar pyrophosphorylase [EC:2.7.7.64] - zju:107421126 988.793
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01310 Blo12g01117 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g01117 Blo-Chr12:28819648 Blo06g00594 Blo-Chr6:28669386 5.87E-12 dispersed
Blo01g01312 Blo-Chr1:50251077 Blo12g01117 Blo-Chr12:28819648 8.77E-20 transposed
Blo04g00967 Blo-Chr4:11952974 Blo12g01117 Blo-Chr12:28819648 9.09E-06 transposed
Blo06g01057 Blo-Chr6:33941124 Blo12g01117 Blo-Chr12:28819648 1.58E-11 transposed
Blo07g00423 Blo-Chr7:8094722 Blo12g01117 Blo-Chr12:28819648 4.97E-07 transposed
Blo16g00842 Blo-Chr16:35462181 Blo12g01117 Blo-Chr12:28819648 5.16E-07 transposed
Blo01g01310 Blo-Chr1:50239779 Blo12g01117 Blo-Chr12:28819648 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g205 Blo01g01310 Blo12g01117 Bda01g00679 Bda03g00024 Bpe02g00626 . Bma04g00020 Bma01g02093 Cmo04g02509 . . . . . Sed01g3096 . . Bhi04g01859 Tan11g1232 Cmetu03g0430 . Hepe02g2207 . Lcy10g1261 Cla08g00628 Cam08g1046 Cec08g0632 Cco08g0744 Clacu08g0753 . Cre08g0562 . . Cone17ag0816 Cone20ag0421 . . . Cme03g00485 . . . . . . . . . . . . . Car04g02317 . Cpe01g02078 . . . . . . . . . . . . . . . Lsi08g00468 . Chy03g00748 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009046 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13100 PF01704 UDPGP 2.60E-11 CL0110 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g01117 Blo_Chr12 FPKM 11.572068 11.509966 1.230576 1.017916 14.616363 14.223544 12.624981 1.507242 1.782892 2.134111