Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01123 ATGGGTGGAAAAATAGTATATTCTTTCTCTCCTCCTCCTTTTTTTTCCTTTTCATTTCTCCTACTCTTGGCTTATCCGTTTCGGAATCGCAGTCGACCTAAGCAAGTCAAAGATGTGGCGCACCAGGATGAGGTGGTCCGTGTTCTTACCAACACCCTCCAAACTACCCATTGCCCGCACATGCTCTTTTATGGTCCTCCTGGTACCGGAAAAACCACCACCGCTCTTGCAATTTCCCATCAGCTTTTCGGACCAGAACTTTACAAGTCTAGAGTGTTGGAACTGAATGCAAGTGATGACCGTGGGATAAATGTTGTTCGAACTAAAATCAAAGACTTTGCTGCTGTTGCTGTAGGTTCTACCCAGCATCAAGGGGATTATCCTTGTCCGCCATACAAGATAATTATCCTAGATGAGGCCGATTCAATGACTGAAGATGCTCAGAATGCTTTGCGGCGAACGATGGAAACTTACTCTAAAGTTACGAGATTCTTTTTCATCTGTAATTACATCAGCAGGATAATAGAGCCGCTGGCCTCCAGGTGTGCAAAATTTAGGTTTAAGCCACTTACAGAAGCAATCATGAGTGATCGTGTATTACACATTTGCAAAGAAGAAGGTCTAAATCTGGATGATGAGGCACTTTCAACCTTAAGTTCTATCTCACAAGGTGATCTTCGGAGGGGTATTACATTTTTGCAGTCGGCAGCACGCTTATTTGGATCATCAATATCTTCACAAAATCTTATCAATGTGTCTGGGGTTCTCCCACTAGAGGTAGTTGAGGCTCTTTTTACAGCATGTAAAAGTGGCAACTTTGATTTAGCGAACAAAGAAGTCAATAATGCAATTGCAGATGGTTATCCAGCATCTCAGATGTTTTCTCAGCTATTTGAGATGGTTGTTGAAGCAGATGATATTCAAGATGAGCAGAAGGCTAAAATATGCAAGAAATTGGCAGAAGCAGATAAGTGTCTGGTTGATGGCGCAGATGAGTATTTGCAACTGCTGGACGTGGCAAGTACTGTGGTGCAAACGCTCTCAGATATGCAACAGTAA 1059 42.68 MGGKIVYSFSPPPFFSFSFLLLLAYPFRNRSRPKQVKDVAHQDEVVRVLTNTLQTTHCPHMLFYGPPGTGKTTTALAISHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSTQHQGDYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEAIMSDRVLHICKEEGLNLDDEALSTLSSISQGDLRRGITFLQSAARLFGSSISSQNLINVSGVLPLEVVEALFTACKSGNFDLANKEVNNAIADGYPASQMFSQLFEMVVEADDIQDEQKAKICKKLAEADKCLVDGADEYLQLLDVASTVVQTLSDMQQ 352
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 28861147 28864507 + BLOR05142 Blo12g01123 68384
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01123 352 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 26 346 - -
Blo12g01123 352 Gene3D - 24 189 IPR027417 -
Blo12g01123 352 Gene3D - 256 346 - -
Blo12g01123 352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 236 IPR027417 -
Blo12g01123 352 SMART AAA_5 57 206 IPR003593 -
Blo12g01123 352 SUPERFAMILY post-AAA+ oligomerization domain-like 258 344 IPR008921 GO:0003677|GO:0006260
Blo12g01123 352 CDD HLD_clamp_RFC 190 249 - -
Blo12g01123 352 Pfam ATPase family associated with various cellular activities (AAA) 61 188 IPR003959 GO:0005524|GO:0016887
Blo12g01123 352 PANTHER REPLICATION FACTOR C SUBUNIT 4 26 346 - -
Blo12g01123 352 CDD AAA 42 182 - -
Blo12g01123 352 Pfam Replication factor C C-terminal domain 259 340 IPR013748 -
Blo12g01123 352 Gene3D - 192 255 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01098 Blo-Chr2:41917201 Blo12g01123 Blo-Chr12:28861147 2.45E-53 dispersed
Blo11g00085 Blo-Chr11:635811 Blo12g01123 Blo-Chr12:28861147 1.47E-27 dispersed
Blo12g01123 Blo-Chr12:28861147 Blo16g00637 Blo-Chr16:25425495 1.36E-12 dispersed
Blo12g01123 Blo-Chr12:28861147 Blo18g00180 Blo-Chr18:1717491 1.46E-58 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01123 K10755 - zju:107405386 567.385