Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Blo12g01123 | ATGGGTGGAAAAATAGTATATTCTTTCTCTCCTCCTCCTTTTTTTTCCTTTTCATTTCTCCTACTCTTGGCTTATCCGTTTCGGAATCGCAGTCGACCTAAGCAAGTCAAAGATGTGGCGCACCAGGATGAGGTGGTCCGTGTTCTTACCAACACCCTCCAAACTACCCATTGCCCGCACATGCTCTTTTATGGTCCTCCTGGTACCGGAAAAACCACCACCGCTCTTGCAATTTCCCATCAGCTTTTCGGACCAGAACTTTACAAGTCTAGAGTGTTGGAACTGAATGCAAGTGATGACCGTGGGATAAATGTTGTTCGAACTAAAATCAAAGACTTTGCTGCTGTTGCTGTAGGTTCTACCCAGCATCAAGGGGATTATCCTTGTCCGCCATACAAGATAATTATCCTAGATGAGGCCGATTCAATGACTGAAGATGCTCAGAATGCTTTGCGGCGAACGATGGAAACTTACTCTAAAGTTACGAGATTCTTTTTCATCTGTAATTACATCAGCAGGATAATAGAGCCGCTGGCCTCCAGGTGTGCAAAATTTAGGTTTAAGCCACTTACAGAAGCAATCATGAGTGATCGTGTATTACACATTTGCAAAGAAGAAGGTCTAAATCTGGATGATGAGGCACTTTCAACCTTAAGTTCTATCTCACAAGGTGATCTTCGGAGGGGTATTACATTTTTGCAGTCGGCAGCACGCTTATTTGGATCATCAATATCTTCACAAAATCTTATCAATGTGTCTGGGGTTCTCCCACTAGAGGTAGTTGAGGCTCTTTTTACAGCATGTAAAAGTGGCAACTTTGATTTAGCGAACAAAGAAGTCAATAATGCAATTGCAGATGGTTATCCAGCATCTCAGATGTTTTCTCAGCTATTTGAGATGGTTGTTGAAGCAGATGATATTCAAGATGAGCAGAAGGCTAAAATATGCAAGAAATTGGCAGAAGCAGATAAGTGTCTGGTTGATGGCGCAGATGAGTATTTGCAACTGCTGGACGTGGCAAGTACTGTGGTGCAAACGCTCTCAGATATGCAACAGTAA | 1059 | 42.68 | MGGKIVYSFSPPPFFSFSFLLLLAYPFRNRSRPKQVKDVAHQDEVVRVLTNTLQTTHCPHMLFYGPPGTGKTTTALAISHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSTQHQGDYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEAIMSDRVLHICKEEGLNLDDEALSTLSSISQGDLRRGITFLQSAARLFGSSISSQNLINVSGVLPLEVVEALFTACKSGNFDLANKEVNNAIADGYPASQMFSQLFEMVVEADDIQDEQKAKICKKLAEADKCLVDGADEYLQLLDVASTVVQTLSDMQQ | 352 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 28861147 | 28864507 | + | BLOR05142 | Blo12g01123 | 68384 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Blo12g01123 | 352 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 26 | 346 | - | - | |
| Blo12g01123 | 352 | Gene3D | - | 24 | 189 | IPR027417 | - | |
| Blo12g01123 | 352 | Gene3D | - | 256 | 346 | - | - | |
| Blo12g01123 | 352 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 48 | 236 | IPR027417 | - | |
| Blo12g01123 | 352 | SMART | AAA_5 | 57 | 206 | IPR003593 | - | |
| Blo12g01123 | 352 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 258 | 344 | IPR008921 | GO:0003677|GO:0006260 | |
| Blo12g01123 | 352 | CDD | HLD_clamp_RFC | 190 | 249 | - | - | |
| Blo12g01123 | 352 | Pfam | ATPase family associated with various cellular activities (AAA) | 61 | 188 | IPR003959 | GO:0005524|GO:0016887 | |
| Blo12g01123 | 352 | PANTHER | REPLICATION FACTOR C SUBUNIT 4 | 26 | 346 | - | - | |
| Blo12g01123 | 352 | CDD | AAA | 42 | 182 | - | - | |
| Blo12g01123 | 352 | Pfam | Replication factor C C-terminal domain | 259 | 340 | IPR013748 | - | |
| Blo12g01123 | 352 | Gene3D | - | 192 | 255 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Blo02g01098 | Blo-Chr2:41917201 | Blo12g01123 | Blo-Chr12:28861147 | 2.45E-53 | dispersed | |
| Blo11g00085 | Blo-Chr11:635811 | Blo12g01123 | Blo-Chr12:28861147 | 1.47E-27 | dispersed | |
| Blo12g01123 | Blo-Chr12:28861147 | Blo16g00637 | Blo-Chr16:25425495 | 1.36E-12 | dispersed | |
| Blo12g01123 | Blo-Chr12:28861147 | Blo18g00180 | Blo-Chr18:1717491 | 1.46E-58 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Blo12g01123 | K10755 | - | zju:107405386 | 567.385 |