Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01123 ATGGGTGGAAAAATAGTATATTCTTTCTCTCCTCCTCCTTTTTTTTCCTTTTCATTTCTCCTACTCTTGGCTTATCCGTTTCGGAATCGCAGTCGACCTAAGCAAGTCAAAGATGTGGCGCACCAGGATGAGGTGGTCCGTGTTCTTACCAACACCCTCCAAACTACCCATTGCCCGCACATGCTCTTTTATGGTCCTCCTGGTACCGGAAAAACCACCACCGCTCTTGCAATTTCCCATCAGCTTTTCGGACCAGAACTTTACAAGTCTAGAGTGTTGGAACTGAATGCAAGTGATGACCGTGGGATAAATGTTGTTCGAACTAAAATCAAAGACTTTGCTGCTGTTGCTGTAGGTTCTACCCAGCATCAAGGGGATTATCCTTGTCCGCCATACAAGATAATTATCCTAGATGAGGCCGATTCAATGACTGAAGATGCTCAGAATGCTTTGCGGCGAACGATGGAAACTTACTCTAAAGTTACGAGATTCTTTTTCATCTGTAATTACATCAGCAGGATAATAGAGCCGCTGGCCTCCAGGTGTGCAAAATTTAGGTTTAAGCCACTTACAGAAGCAATCATGAGTGATCGTGTATTACACATTTGCAAAGAAGAAGGTCTAAATCTGGATGATGAGGCACTTTCAACCTTAAGTTCTATCTCACAAGGTGATCTTCGGAGGGGTATTACATTTTTGCAGTCGGCAGCACGCTTATTTGGATCATCAATATCTTCACAAAATCTTATCAATGTGTCTGGGGTTCTCCCACTAGAGGTAGTTGAGGCTCTTTTTACAGCATGTAAAAGTGGCAACTTTGATTTAGCGAACAAAGAAGTCAATAATGCAATTGCAGATGGTTATCCAGCATCTCAGATGTTTTCTCAGCTATTTGAGATGGTTGTTGAAGCAGATGATATTCAAGATGAGCAGAAGGCTAAAATATGCAAGAAATTGGCAGAAGCAGATAAGTGTCTGGTTGATGGCGCAGATGAGTATTTGCAACTGCTGGACGTGGCAAGTACTGTGGTGCAAACGCTCTCAGATATGCAACAGTAA 1059 42.68 MGGKIVYSFSPPPFFSFSFLLLLAYPFRNRSRPKQVKDVAHQDEVVRVLTNTLQTTHCPHMLFYGPPGTGKTTTALAISHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSTQHQGDYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEAIMSDRVLHICKEEGLNLDDEALSTLSSISQGDLRRGITFLQSAARLFGSSISSQNLINVSGVLPLEVVEALFTACKSGNFDLANKEVNNAIADGYPASQMFSQLFEMVVEADDIQDEQKAKICKKLAEADKCLVDGADEYLQLLDVASTVVQTLSDMQQ 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28861147 28864507 + BLOR05142 Blo12g01123 68384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01123 352 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 26 346 - -
Blo12g01123 352 Gene3D - 24 189 IPR027417 -
Blo12g01123 352 Gene3D - 256 346 - -
Blo12g01123 352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 236 IPR027417 -
Blo12g01123 352 SMART AAA_5 57 206 IPR003593 -
Blo12g01123 352 SUPERFAMILY post-AAA+ oligomerization domain-like 258 344 IPR008921 GO:0003677|GO:0006260
Blo12g01123 352 CDD HLD_clamp_RFC 190 249 - -
Blo12g01123 352 Pfam ATPase family associated with various cellular activities (AAA) 61 188 IPR003959 GO:0005524|GO:0016887
Blo12g01123 352 PANTHER REPLICATION FACTOR C SUBUNIT 4 26 346 - -
Blo12g01123 352 CDD AAA 42 182 - -
Blo12g01123 352 Pfam Replication factor C C-terminal domain 259 340 IPR013748 -
Blo12g01123 352 Gene3D - 192 255 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01123 K10755 RFC2_4; replication factor C subunit 2/4 - zju:107405386 567.385
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01098 Blo-Chr2:41917201 Blo12g01123 Blo-Chr12:28861147 2.45E-53 dispersed
Blo11g00085 Blo-Chr11:635811 Blo12g01123 Blo-Chr12:28861147 1.47E-27 dispersed
Blo12g01123 Blo-Chr12:28861147 Blo16g00637 Blo-Chr16:25425495 1.36E-12 dispersed
Blo12g01123 Blo-Chr12:28861147 Blo18g00180 Blo-Chr18:1717491 1.46E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g231 . Blo12g01123 . Bda03g00016 . Bpe04g00011 Bma04g00016 Bma01g02668 . . Cma01g01369 . . . . . . . . . . . . . . . . . . . . Cone4ag1422 Cone7ag1515 . . . Csa04g01779 . . . . . . . . . . . Cmo01g01421 . . . . . . . . . . . . . . . . . . . . . . . . Cme07g00817
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo03g00974 . 145 882 Core DNA Replication Machinery Family AT4G14700 65.6 2.2e-283 971.8
Blo03g00975 . 123 719 Core DNA Replication Machinery Family AT4G14700 57.4 7.9e-217 750.7
Blo03g00974 . 80 882 Core DNA Replication Machinery Family AT4G12620 62.7 2.4e-290 995.0
Blo03g00975 . 123 719 Core DNA Replication Machinery Family AT4G12620 58.0 1.3e-222 770.0
Blo17g00848 . 206 531 Core DNA Replication Machinery Family AT2G37560 62.7 2.8e-123 438.7
Blo01g00744 . 1 408 Core DNA Replication Machinery Family AT2G01120 54.3 5.0e-122 434.9
Blo01g00205 . 3 527 Core DNA Replication Machinery Family AT4G29910 57.7 5.4e-172 601.3
Blo10g00449 . 1 264 Core DNA Replication Machinery Family AT1G26840 69.3 1.7e-94 342.8
Blo01g00424 . 452 676 Core DNA Replication Machinery Family AT1G26840 68.4 1.0e-78 290.4
Blo15g00779 . 1 814 Core DNA Replication Machinery Family AT1G79150 56.2 1.5e-234 809.7
Blo15g00681 . 1 539 Core DNA Replication Machinery Family AT1G79150 52.1 8.0e-132 468.4
Blo03g01396 . 1 921 Core DNA Replication Machinery Family AT1G44900 75.6 0.0e+00 1335.5
Blo14g00834 . 48 628 Core DNA Replication Machinery Family AT5G46280 78.8 2.6e-259 891.3
Blo10g00430 . 22 836 Core DNA Replication Machinery Family AT2G16440 72.0 0.0e+00 1130.5
Blo01g00598 . 1 709 Core DNA Replication Machinery Family AT2G07690 76.8 6.9e-313 1069.7
Blo08g00626 . 137 962 Core DNA Replication Machinery Family AT5G44635 72.0 0.0e+00 1152.9
Blo06g00534 . 15 719 Core DNA Replication Machinery Family AT4G02060 84.8 0.0e+00 1204.9
Blo14g00089 BCT 25 548 Core DNA Replication Machinery Family AT2G29680 53.7 4.7e-143 505.0
Blo13g01051 BCT 26 524 Core DNA Replication Machinery Family AT2G29680 54.0 1.8e-142 503.1
Blo14g00089 BCT 1 518 Core DNA Replication Machinery Family AT1G07270 51.4 4.3e-130 461.8
Blo13g01051 BCT 24 493 Core DNA Replication Machinery Family AT1G07270 52.8 1.1e-128 457.2
Blo15g00359 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.6 2.4e-255 878.2
Blo06g00379 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.1 9.2e-255 876.3
Blo09g00553 . 22 795 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1090.1
Blo04g01396 . 6 361 Core DNA Replication Machinery Family AT2G14050 73.8 1.9e-165 579.7
Blo06g00837 . 1 964 Core DNA Replication Machinery Family AT1G77320 50.5 1.6e-259 892.9
Blo05g00261 . 853 1159 Core DNA Replication Machinery Family AT4G02110 58.1 5.6e-102 369.8
Blo10g00626 . 101 299 Core DNA Replication Machinery Family AT1G80190 70.3 2.5e-79 292.0
Blo02g00887 . 38 182 Core DNA Replication Machinery Family AT3G12530 70.3 1.8e-58 222.2
Blo13g00859 CCT 479 644 Core DNA Replication Machinery Family AT1G19080 65.1 1.4e-60 229.6
Blo13g00859 CCT 479 644 Core DNA Replication Machinery Family AT3G55490 65.1 1.4e-60 229.6
Blo04g01050 . 1 1612 Core DNA Replication Machinery Family AT5G67100 56.9 0.0e+00 1704.5
Blo06g00822 . 130 744 Core DNA Replication Machinery Family AT1G67630 55.8 1.0e-195 680.2
Blo01g00167 . 1 435 Core DNA Replication Machinery Family AT1G67320 64.3 1.7e-182 636.0
Blo05g00533 . 4 861 Core DNA Replication Machinery Family AT5G63960 75.7 0.0e+00 1338.9
Blo07g01274 . 71 477 Core DNA Replication Machinery Family AT2G42120 68.8 1.4e-170 596.3
Blo01g00167 . 1 435 Core DNA Replication Machinery Family AT1G67320 64.3 1.7e-182 636.0
Blo14g00223 . 3 2123 Core DNA Replication Machinery Family AT1G08260 68.5 0.0e+00 2870.5
Blo14g00223 . 9 2238 Core DNA Replication Machinery Family AT2G27120 65.4 0.0e+00 2850.5
Blo15g00024 . 19 464 Core DNA Replication Machinery Family AT5G22110 69.5 1.2e-178 623.2
Blo08g00066 . 388 1290 Core DNA Replication Machinery Family AT5G22010 66.4 4.3e-304 1040.8
Blo02g01098 . 3 355 Core DNA Replication Machinery Family AT1G63160 83.9 3.1e-167 584.7
Blo11g00085 . 1 339 Core DNA Replication Machinery Family AT5G27740 79.4 2.7e-153 538.5
Blo12g01123 . 26 352 Core DNA Replication Machinery Family AT1G21690 79.6 9.7e-145 510.0
Blo18g00180 . 1 362 Core DNA Replication Machinery Family AT1G77470 78.1 2.9e-158 555.1
Blo16g00969 . 26 615 Core DNA Replication Machinery Family AT2G06510 68.9 1.5e-247 852.4
Blo03g00091 . 34 725 Core DNA Replication Machinery Family AT2G06510 50.5 1.3e-198 689.9
Blo06g01214 . 1 625 Core DNA Replication Machinery Family AT5G08020 67.1 1.3e-243 839.3
Blo15g00339 . 1 634 Core DNA Replication Machinery Family AT5G08020 65.7 8.5e-240 826.6
Blo06g01214 . 1 619 Core DNA Replication Machinery Family AT5G61000 66.3 1.4e-240 829.3
Blo15g00339 . 1 628 Core DNA Replication Machinery Family AT5G61000 65.8 5.2e-240 827.4
Blo03g00091 . 8 853 Core DNA Replication Machinery Family AT4G19130 51.3 4.1e-226 781.6
Blo18g00682 . 169 531 Core DNA Replication Machinery Family AT5G26680 84.0 1.0e-175 613.2
Blo13g00680 . 255 540 Core DNA Replication Machinery Family AT2G25100 68.5 3.4e-111 398.3
Blo08g00019 . 2 784 Core DNA Replication Machinery Family AT1G08130 67.2 3.6e-291 997.7
Blo08g00019 . 160 784 Core DNA Replication Machinery Family AT1G49250 65.5 3.7e-233 804.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010443 1 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g01123 Blo_Chr12 FPKM 39.892376 39.869362 22.3181 20.905268 22.099531 14.207808 20.645584 1.289056 1.284926 0.674226