Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01124 ATGGCGAAGCAGTTCTTCCAAACCATAGCTACAAGAGCACTCCCATTGTACAAAGATCTGCAACAATATTACACACACCATTTGCGTTTTCAACGCATGAGAAACACGATTTACGATACCAGAACAAGCGAAGAAGAAGAAGAAGAAGAGGAAAAGGAGCGTACCGGCATTGGGAGACTGGATAGGGATGAAAGGGGAGGAAGAGGAGGAAGGAATGGCGTAATGTGGAGGAAGCTTCTGAGAGCCGAGCGTCGGAGTCCGCCATTGTCCTCCCCCCCCTTCCCCCTTCCTCTCTCCTTCTCTCCTCCTCCTATTTTGCTTGCGCCAATCAAACACTTTTCTCGCTCTCTTTTACTCTCAATGCCACCTTCTCCTTCCTTTCCTTCCGGGACTCGCGGCAAGTGGAAGAAGCGGAAGGCCGAATCTCTATCCACACGCAGAAACAACCACGCCACCTTAAACGCCATTAACCACAACAACAATAAGCCCGACGACGAAGACGATGATGATGACCTACCTGCTCCTGAAAATGACGAACTTGACAACATTGACGACTCCGACGACCCTCTCCTTCACCCCAACCCCCAATCCACCTCCGCACTCTTGCCTAACAACTCTCACGAGACTGAAGTGTTGTCCCATGATGGAGTCCGAATTTCTGATTTCCCATTGGCTGTCAGGCGCTCTGTGAGTCGGCCCCATTCCTCCGTGCTGGGGATTATGGCTTTGGAGAGAGCCAATCAGTTTGGAGAGAGTAAGGTACAGTCCAGTAATTCTTGGGTTTTGGAAAATGTCTCCTATGGTCAGCTCCAGGCACTATCTGCTGTCCCCGTGGATAGTCCAGCTTTGCTGGATCAGGACAGAGCGGAGTCCTGCAATTCTTCTTACGTAGTGACTCCACCATCGATTATGGAAGGCGAGGGTGTGGTTAAGCGGTTTGGAAACAGGGCTCATGTCGTTCCCATGCATTCAGATTGGTTTTCTCCAGCCATGGTACATCGATTGGAGAGACAAGTGGTCCCACATTTTTTCTCAGGGAAATCTTCTGATCATACTCCTGAGAAATACATGGAATGTAGAAATTACATTGTTGCAAAATACATGGAGAATCCAGACACGAGACTTGCAGTTTCTGATTGCCACAGAGTGAATGTTGGTGTTGTTAATGACGATTTAGCTCGAATTTTTAAGTTTCTTGATAATTGGGGAATTATTAATTATTCTGCTAGAGAACCAATTCATGATCCTCAGCATGGTAATTCCTGCCTAAAGGAGGATCTAAATGGTGAGATTCATGTGCCATCAGCTGGTTTGAAATCAGTTGACAGTTTAATCAAATTTGACAAGCCTAAATGTCGGCTTAAGGTCGCTGATGTATATTCATCATTATCATGTCACAAAGATGATATCTTTGATCTGGATAGCAAAATTCGAGACCATCTTTCAGAAAATCAATGTCATTCGTGCTCTCGGTCTCTTCCTATTATATCCTATCAGTCGCAGAAGGATGTGGATGTCCTATTATGTTCAGATTGCTTCCATGAGGGGAAACACGTCACTGGTCATTCAAGCATAGATTTTTCACTTGTTGATTTAACAAAAGATTACGGTGACCTAGATGGTGAAAGTTGGACAGATCAAGAAACCTTATTACTCTTAGAAGCAATAGAGATATATAATGAGAATTGGAATGAAATAGCAGAGCATGTGGGGTCCAAGTCTAAAGCTCAATGCATTCTTCATTTTCTACGACTGCCAATTGAGGATCGCCTTCTGGAAAATGTTGAAGTTCCAGGTGCTTCCTTTTCAAACAATTCATCAAGCGGAGATTTTTGTGGAAGGCCTCATTCAAATGTTGCAGGTAATTGTCATCGCGAACTTGATTTTGAGAGCAGACTCCCCTTTGCTAATTCTGGTAACCCAGTCATGGCCTTGCTTAGAAATTTCACATTCTTCTTTAATGAGACGCTGACTGAGGTTTCTGTTGGAAAAATCTCCCAGGTTGCATTTCTGGCATCCGCAGTTGGACCAAGAGTTGCTGCAGCCTGTGCTCACGCATCTCTCGCAGCATTGTCTGAGGATAATGATTTGTCTGCATTGGGGCACAGTAATAAGATGAATTTAGAGAGTGGACATGTCAAGGAAGGTGGTACTACCCGAGATTTTCCCAGTTTAGTTAAGCAAAAAGGTGAAAACGATGTAGAGCCCGAGATTACTTTGTTGTCTGAACAAAAAGTGAAAGCGGCTGCTTCAGCAGGCCTTGCTGCTGCAGCAACAAAGGCGAAATCATTTGCAGATCATGAAGAAAGAGAAATACAGAGATTGTCTGCCAATATTATAAACCATCAGTTGAAGAGATTGGAGTTGAAGTTGAAGCAATTTGCGGAAATAGAAACCTTTTTGATGAAGGAATGTGAACAAGTAGAAAAGACGAGGCAGAGGTTTATTGGGGAGCGGACAAGAATGTTATCTGTCCCTTACGGACCTAGTGGTGCCATTTCACCCATGACTCTACCGAACGCTGGTCCTTCCGTGGCTAGCAGTAGTGCCACAAACAATAGGCAACAGATGGTCTCAGCTCCACCATCACAGCCAGGCGTTTCAGGATACGCAAACAATCAACCAGTTCATCCCCACATGTCATACATGCCACGCCAGCCATTGTTTGGTTTAGGGCCGAGGCTGCCCTTGTCTGCCATACAGCCCTCATCAGCTCCTTCAAACGCCATGTTTAATGGCCCTGGTAATCTCCAGAGGCCTGTAACGGGAACTACCTCTGGATTAGGTTGA 2790 45.3 MAKQFFQTIATRALPLYKDLQQYYTHHLRFQRMRNTIYDTRTSEEEEEEEEKERTGIGRLDRDERGGRGGRNGVMWRKLLRAERRSPPLSSPPFPLPLSFSPPPILLAPIKHFSRSLLLSMPPSPSFPSGTRGKWKKRKAESLSTRRNNHATLNAINHNNNKPDDEDDDDDLPAPENDELDNIDDSDDPLLHPNPQSTSALLPNNSHETEVLSHDGVRISDFPLAVRRSVSRPHSSVLGIMALERANQFGESKVQSSNSWVLENVSYGQLQALSAVPVDSPALLDQDRAESCNSSYVVTPPSIMEGEGVVKRFGNRAHVVPMHSDWFSPAMVHRLERQVVPHFFSGKSSDHTPEKYMECRNYIVAKYMENPDTRLAVSDCHRVNVGVVNDDLARIFKFLDNWGIINYSAREPIHDPQHGNSCLKEDLNGEIHVPSAGLKSVDSLIKFDKPKCRLKVADVYSSLSCHKDDIFDLDSKIRDHLSENQCHSCSRSLPIISYQSQKDVDVLLCSDCFHEGKHVTGHSSIDFSLVDLTKDYGDLDGESWTDQETLLLLEAIEIYNENWNEIAEHVGSKSKAQCILHFLRLPIEDRLLENVEVPGASFSNNSSSGDFCGRPHSNVAGNCHRELDFESRLPFANSGNPVMALLRNFTFFFNETLTEVSVGKISQVAFLASAVGPRVAAACAHASLAALSEDNDLSALGHSNKMNLESGHVKEGGTTRDFPSLVKQKGENDVEPEITLLSEQKVKAAASAGLAAAATKAKSFADHEEREIQRLSANIINHQLKRLELKLKQFAEIETFLMKECEQVEKTRQRFIGERTRMLSVPYGPSGAISPMTLPNAGPSVASSSATNNRQQMVSAPPSQPGVSGYANNQPVHPHMSYMPRQPLFGLGPRLPLSAIQPSSAPSNAMFNGPGNLQRPVTGTTSGLG 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28868050 28874887 - BLOR05143 Blo12g01124 68385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01124 929 Pfam SWIRM domain 321 407 IPR007526 GO:0005515
Blo12g01124 929 Gene3D - 540 590 - -
Blo12g01124 929 MobiDBLite consensus disorder prediction 899 929 - -
Blo12g01124 929 Coils Coil 765 785 - -
Blo12g01124 929 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 199 918 - -
Blo12g01124 929 ProSiteProfiles SWIRM domain profile. 318 416 IPR007526 GO:0005515
Blo12g01124 929 ProSiteProfiles Myb-like domain profile. 543 586 IPR001005 -
Blo12g01124 929 MobiDBLite consensus disorder prediction 164 185 - -
Blo12g01124 929 MobiDBLite consensus disorder prediction 124 204 - -
Blo12g01124 929 Pfam SWIRM-associated region 1 752 822 IPR032451 -
Blo12g01124 929 Pfam Myb-like DNA-binding domain 543 585 IPR001005 -
Blo12g01124 929 PANTHER SWI/SNF COMPLEX-RELATED 199 918 - -
Blo12g01124 929 MobiDBLite consensus disorder prediction 900 929 - -
Blo12g01124 929 CDD SANT 543 585 IPR001005 -
Blo12g01124 929 SMART sant 540 588 IPR001005 -
Blo12g01124 929 SUPERFAMILY Homeodomain-like 541 592 IPR009057 -
Blo12g01124 929 SUPERFAMILY Homeodomain-like 317 416 IPR009057 -
Blo12g01124 929 MobiDBLite consensus disorder prediction 708 731 - -
Blo12g01124 929 MobiDBLite consensus disorder prediction 41 72 - -
Blo12g01124 929 ProSiteProfiles SANT domain profile. 539 590 IPR017884 -
Blo12g01124 929 MobiDBLite consensus disorder prediction 52 72 - -
Blo12g01124 929 Gene3D - 324 411 IPR036388 -
Blo12g01124 929 MobiDBLite consensus disorder prediction 842 866 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01124 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - csv:101220514 980.319
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00506 Blo-Chr4:4295460 Blo12g01124 Blo-Chr12:28868050 3.09E-53 dispersed
Blo12g01124 Blo-Chr12:28868050 Blo18g00731 Blo-Chr18:19605658 3.65E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g235 . Blo12g01124 . Bda03g00015 . Bpe04g00010 Bma04g00014 . . . Cma01g01377 Cma09g00777 . . . Cpe06g00612 . . . . . . . . . . . . . . . . . . Cone20ag0433 Lsi04g02409 Csa04g01782 . . . . . . . . . . Sed06g0997 Cmo01g01428 Cmo09g00769 . . . Car09g00686 . Cpe02g00561 Bhi09g02703 Tan01g4053 Cmetu07g1927 . Hepe01g1595 Mch11g0847 . Cla11g01548 Cam11g1612 Cec11g1641 Cco11g1642 Clacu11g1770 Cmu11g1587 Cre11g2004 . . Chy07g00621 Cme07g00826
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005902 1 1 1 1 1 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g01124 Blo_Chr12 FPKM 1.587097 1.456059 25.051647 27.620619 307.841736 291.759247 298.472321 1.541018 1.352882 1.425369