Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01127 ATGACGAGTGAAGGCCATTCCTACTGCTATTTCCATCCCAAACAATTAGTCGTCGGTGTTTGTGCTTTCTGCTTGAACGACCGTCTCTTGATCTTGGCTTCACAACAACCTCACTCTCTTTCCTCACCTCATTCCAATTCCGCCGCCCCTCGCTTTGCTCAACCTCCTAAGCCTAATGCTACTCTCTTCAACATCCTTCGTTTCCTCAATCGCCGCCTTCAGTTCCGGCATACGAACCCGGAAAACTCCGACCACGAAGCTTCCCCCAGCCATGAAGACTCGTTCATATCAATGGAGTTCGAACGAAATGGGGTAGAGTCGTGGGAGAAGAGCAAAGATTCAAAGGGTTCGGTGGAGGATTCATGGAATCAGAATAGTCACAGGAAGGAGGCAAGGGAGACAGAGAGCAGGGGAGTGATAGAGCATGGGAAACAGCATGCCTCGCTGAGGTGGCGGAAACGGATTGGCCACTTGTTCCAACTCATCAGATGGTGGAAGAAGAGGCCAAACAAGAGTGGGACAGTGTGCCAGTTTGCATTATGTGGGCTGGGGTTCCCGCAATGCCCCATTCACACTTTTGCACTGAGGTTTGGGCTTATTGGGCCCTTTCTCATAGCCGCATCCGAGGTGGTTCCCCTGCACTCTCTCGGAGGAGACCTCTCCACGCGTACTCCTCGGGACTCCACGCTTCTCCACGTGTCATTCACTGGCAGGCCTTCTGAGATCTCCCCCTCAACACCAGCCGCACCCTCTTATCACCAAAAATCCCATCTGTTTAATCTCTTTCACTACTTTTGTTTCCCCCTCTTCTTCCCTCCCTCCCTCCCTCCCTCCTCCATGACTCTCTCAGCTCCCAACGCCATGACTGCCGCCCCTACTGCTGCCCTTCTCTCCCTCCCCATTTCTTTATCCAAATCATCCAGGCTTTATCCTAAGAAGGGTCTTAAAGGAGGAATCCGGGTGCTTGCCGTTTATGGAGAAGAAGGAGCTTCAGAGAGGAAGGGTGGATGGAGTACGATTTTCGATGTGGAGGATCCGAGGTCCAAATTTCCACAATCCAAAGGGAAGTTTTTGGATGTAAATCAGGCTCTCGAAGTCGCTAGATTAGACATTCAGTACTGTGATTGGCGGGCTCGTCAGGATGTTCTCACTATCATGCTTCTCCATGAAAAGGTCGTTGAAGTTCTAAATCCTCTTGCTCGCGATTTCAAGTCCATTGGTACCTTGAAGAAAGATCTAGCCGAGTTGCAAGATGAATTAGCACAAGCTCACAGGCAGGTTCACATATCCGAGGCCAGGGTTGCCACTGCGTTGGATAAACTCGCATACATGGAAACACTGGTAAATGATAAGTTGTTGGATGACAAACAAACCAAAGAATCGGATGACTCTGCTCCTTCTTCTAGTGGGTCATCCCAATCTGCCCAAACTCTTAATGGGAGATTGGTAAGGAAAGGTTTGAAAGTGTCAGGACCCGTTCAACCTTATCATCCTCGCTTGAAAAATTTCTGGTACCCTGTCGCATTTTCGAATGACTTGAAGGTGGACACCATGATTCCAATGGATTGCTTTGAACAGTCATGGGTTATCTTCCGTGGAAAGGATGGAAACCCTGGATGTGTGAAGAACACATGCGCACACAGAGCGTGTCCTCTTGACCTTGGTACGGTAAATGAGGGTCGAATCCAGTGTCCCTATCATGGGTGGGAATATTCGACGGACGGAAAGTGTGAAAAAATGCCATCTACGCGATTACTTGATGTGAAGATAAAGGCATTGCCTTGTTTTGAAAAGGAAGGGATGATCTGGATTTGGCCTGGAAATGACCCTCCAACGCCCGAGCTTCCTTCTTTGCAACCTCCTCCAGGTTTTCAAGTTCATGCTGAGCTTATCATGGAGCTTCCGGTGGAACATGGATTACTTCTGGATAATCTTTTGGATCTTGCGCATGCTCCTTTCACTCATACTTCGACCTTTGCCAAGGGTTGGAGTGTGCCCAGGTTGGTGAAGTTTTTGACGCCTGCATCAGGCCTCCAAGGATATTGGGACCCATATCCAATAGACATGGAGTTTAGACCCCCTTGTATGGTGCTTTCCACCATTGGAATCTCAAAGCCAGGAAAACTTGAAGGGCAGAGTACCAAACAATGTGCCACTCACCTACACCAACTTCATGTTTGCTTACCTTCTTCTAGAAACAAAACCCGCCTTCTGTACAGAATGTCGCTGGATTTTGCCCCGTTGCTCAAGCACATTCCTTTCATGCATTATCTCTGGAGGCATTTTGCAGAACAGGTTTTGAATGAGGATCTAAGGCTTGTGATTGGGCAACAAGACCGCATGATCAATGGGGAGAATATATGGAACATGCCAGTTTCTTATGACAAGTTGGGAATCCGATACCGGCTATGGAGGGATGCGGTGGACAAGGGAGCAAAGCAATTGCCTTACACCAAATCAAACTGA 2466 48.62 MTSEGHSYCYFHPKQLVVGVCAFCLNDRLLILASQQPHSLSSPHSNSAAPRFAQPPKPNATLFNILRFLNRRLQFRHTNPENSDHEASPSHEDSFISMEFERNGVESWEKSKDSKGSVEDSWNQNSHRKEARETESRGVIEHGKQHASLRWRKRIGHLFQLIRWWKKRPNKSGTVCQFALCGLGFPQCPIHTFALRFGLIGPFLIAASEVVPLHSLGGDLSTRTPRDSTLLHVSFTGRPSEISPSTPAAPSYHQKSHLFNLFHYFCFPLFFPPSLPPSSMTLSAPNAMTAAPTAALLSLPISLSKSSRLYPKKGLKGGIRVLAVYGEEGASERKGGWSTIFDVEDPRSKFPQSKGKFLDVNQALEVARLDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDFKSIGTLKKDLAELQDELAQAHRQVHISEARVATALDKLAYMETLVNDKLLDDKQTKESDDSAPSSSGSSQSAQTLNGRLVRKGLKVSGPVQPYHPRLKNFWYPVAFSNDLKVDTMIPMDCFEQSWVIFRGKDGNPGCVKNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGKCEKMPSTRLLDVKIKALPCFEKEGMIWIWPGNDPPTPELPSLQPPPGFQVHAELIMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPRLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQSTKQCATHLHQLHVCLPSSRNKTRLLYRMSLDFAPLLKHIPFMHYLWRHFAEQVLNEDLRLVIGQQDRMINGENIWNMPVSYDKLGIRYRLWRDAVDKGAKQLPYTKSN 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28896379 28900640 - BLOR05146 Blo12g01127 68388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01127 821 MobiDBLite consensus disorder prediction 463 477 - -
Blo12g01127 821 MobiDBLite consensus disorder prediction 108 141 - -
Blo12g01127 821 CDD Rieske_RO_Alpha_Cao 487 616 - -
Blo12g01127 821 Coils Coil 406 433 - -
Blo12g01127 821 Gene3D - 498 619 IPR036922 GO:0051537
Blo12g01127 821 ProSitePatterns Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 545 567 IPR015881 GO:0005506|GO:0051537
Blo12g01127 821 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 504 604 IPR017941 GO:0051537
Blo12g01127 821 Pfam Rieske [2Fe-2S] domain 504 585 IPR017941 GO:0051537
Blo12g01127 821 Gene3D - 622 814 - -
Blo12g01127 821 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 359 819 - -
Blo12g01127 821 MobiDBLite consensus disorder prediction 454 477 - -
Blo12g01127 821 PANTHER CHLOROPHYLLIDE A OXYGENASE, CHLOROPLASTIC-LIKE 359 819 - -
Blo12g01127 821 SUPERFAMILY ISP domain 500 609 IPR036922 GO:0051537
Blo12g01127 821 SUPERFAMILY Bet v1-like 600 808 - -
Blo12g01127 821 Pfam Pheophorbide a oxygenase 691 785 IPR013626 GO:0010277
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01127 K13600 CAO; chlorophyllide a oxygenase [EC:1.14.13.122] - jre:108981140 910.983
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01296 Blo12g01127 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g01127 Blo-Chr12:28896379 Blo18g00184 Blo-Chr18:1759525 4.61E-38 dispersed
Blo01g01296 Blo-Chr1:49771687 Blo12g01127 Blo-Chr12:28896379 0 transposed
Blo14g00674 Blo-Chr14:14987001 Blo12g01127 Blo-Chr12:28896379 9.11E-06 transposed
Blo01g01294 Blo-Chr1:49689239 Blo12g01127 Blo-Chr12:28896379 7.24E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g260 Blo01g01296 Blo12g01127 Bda01g00654 Bda03g00012 Bpe02g00642 Bpe04g00006 Bma04g00011 Bma01g02071 Cmo04g02472 Cmo15g00690 . . . . . . . Bhi04g01914 . . . Hepe02g2268 . . Cla08g00590 Cam08g1005 Cec08g0595 Cco08g0704 Clacu08g0714 . Cre08g0525 Cone4ag1410 Cone7ag1528 . . . . . Cme03g00556 . . . . . . . . . . . . . Car04g02290 Car15g00623 Cpe01g02051 . . . . . . . . . . . . . . . Lsi08g00436 . Chy03g00799 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005024 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g01127 Blo_Chr12 FPKM 38.228825 39.661247 25.196381 26.126093 17.796375 18.387352 18.624231 28.537163 28.562901 28.447418