Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00003 ATGGCAACAGTCACCGCCCAAGCTTCCGCTCCAGTTTTCCGGCTAACTACTTCGAAAACCAGATTCTTATCGGGCTCTTCCGGTAAACTGAACCGAGAGATTTCTGTTAAATCATCGACTTCTCCGGTTACTTCCTTCAAAGTTGAGGCTAAGAAAGGAGAATGGTTGCCGGGTCTGCCCTCGCCAGCTTATCTCAACGGCAGTCTTCCCGGCGACAACGGGTTTGACCCACTTGGGCTAGCGGAAGATCCAGAAAATCTCCGATGGTTCGTCCAAGCTGAGCTTGTCAATGGCCGGTGGGCGATGCTGGGTGTCGCCGGAATGTTGCTACCGGAAGTGTTCACCAAGATCGGAATCCTCAACGTACCGAAATGGTACGACGCCGGAAAAGCTGAATACTTTGCATCGTATTCCACTCTTTTCGTGATTGAGTTCATTCTGTTCCACTACGTCGAGATCAGAAGATGGCAAGATATTAAAAACCCAGGAAGTGTAAATCAAGATCCAATTTTTAAGCAATACAGCTTACCCCCAAACGAAGTTGGCTATCCCGGCGGAATTTTCAACCCTCTCAACTTCGCTCCCACCCTCGAAGCCAAAGAGAAGGAGATCGCAAATGGTCAGTCCAGAATTTTTCGTCCAAACGTCTGTTTTCCGTCATCTGTAAAATTAGGAAGGCTGATTTTTGAAATGGGGAGGTTGGCGATGTTGGCGTTTTTGGGGTTTGTGATTCAGCACAATGTGACCGGAAAAGGGCCGTTCGACAACCTTTTACAGCACCTATCCGACCCATGGCACAACACCATTGTCCAAACGCTTGATGGTTTTGGTTCTTGTGATGATCATGCTATCCTTGCCTTCGATCTTCTTTGCTTGCCTGATATTAATATCCAGAAAAATTGGGGCTGA 909 47.74 MATVTAQASAPVFRLTTSKTRFLSGSSGKLNREISVKSSTSPVTSFKVEAKKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGILNVPKWYDAGKAEYFASYSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEAKEKEIANGQSRIFRPNVCFPSSVKLGRLIFEMGRLAMLAFLGFVIQHNVTGKGPFDNLLQHLSDPWHNTIVQTLDGFGSCDDHAILAFDLLCLPDINIQKNWG 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 29525 30677 + BLOR05284 Blo13g00003 68398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00003 302 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 209 IPR001344 GO:0009765|GO:0016020
Blo13g00003 302 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 230 276 IPR001344 GO:0009765|GO:0016020
Blo13g00003 302 SUPERFAMILY Chlorophyll a-b binding protein 52 207 - -
Blo13g00003 302 Gene3D Chlorophyll a/b binding protein domain 62 266 - -
Blo13g00003 302 Pfam Chlorophyll A-B binding protein 62 207 IPR022796 -
Blo13g00003 302 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 209 - -
Blo13g00003 302 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 230 276 - -
Blo13g00003 302 SUPERFAMILY Chlorophyll a-b binding protein 232 273 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g00773 Blo13g00003 CCT
Blo04g00773 Blo13g00003 ECH
Blo13g00003 Blo15g00312 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g01231 Blo-Chr7:32374725 Blo13g00003 Blo-Chr13:29525 1.32E-54 dispersed
Blo09g00381 Blo-Chr9:14647042 Blo13g00003 Blo-Chr13:29525 5.85E-70 dispersed
Blo13g00003 Blo-Chr13:29525 Blo13g00725 Blo-Chr13:30084886 1.13E-40 dispersed
Blo17g00857 Blo-Chr17:27960198 Blo13g00003 Blo-Chr13:29525 2.42E-63 transposed
Blo13g00003 Blo-Chr13:29525 Blo15g00312 Blo-Chr15:3585189 6.45E-88 wgd
Blo13g00003 Blo-Chr13:29525 Blo04g00773 Blo-Chr4:7617799 1.90E-156 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00003 K08910 - pvy:116133502 454.521