Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00013 ATGGAAGGAGGAGATGAGCTCCACCACCACCATCGCCATCTCCACCACCACAACCGCCCAACCTTCCCCTTTCAATTACTAGAAAAGAAAGACGATGAAGCTTCCTGCTCCAGTTCCGCGTACCCTTCTCTAGCCATTTCCGCAGATCCACCCACCTCTGCCTCCCGTTTGCAGGTCACCCCCTCCACATCGGCAGAGCCGTCCAAGAAGCCTCCGCCCAAACGAACATCGACGAAGGACCGCCACACCAAGGTCGACGGCCGTGGACGCCGCATCAGAATGCCTGCTCTTTGCGCAGCGAGGGTTTTCCAGCTAACCCGAGAGCTGGGCCACAAGTCCGACGGAGAAACCATTGAGTGGCTCCTCCAACAGGCGGAGCCAGCCGTGATCGCAGCTACCGGCACAGGAACAATACCGGCGAACTTCACTTCACTTAATATATCATTAAGAAGCTCCGGCTCAAGCATGTCCGTTCCATCTCAGCTTAGATCATCTTCCTACTATAATCCGAATTTCTCTCTTCAGCAACCGAGAAGAAGTCTTTTTCCGGGAATAGGTTTGTCGCCGGAAAATACATCCACGTTACTGAATTTTCAGTCCAATAGTATGGGTTCTATGCTGCAAGCAAAGCAAGAACTGAGAGATACTTCATTGGAGGTATCTGAGGGGGATGAAGGCACAGGCCGGAAAAGAAGACCGGAGCAAGATTTGTCGCCTCAGCAACAAATGGGTAGCTATTTATTGCAATCAAGTGCCGGAGCAATTCCGGCGACACATGGGGCTCAAATTCCTGCCAATTTTTGGATGCTAACTAATACAAATAACCAAGTCATGGGTGGCGACCCGATTTGGACATTTCCCTCCGTTAGTAATAGTGCTTTGTATAGGGGGACCATGTCTAGTGGGTTACATTTCATGAATTTTCCGACCCCGATGACCTTATTGCCTGGTCAACAATTAGGGTCGGTCATCGGGATTGGTAGCGGCGGTAGCAGTGGCGCCAATGACGGACATTTAAATATGTTGACGGGACTAAACCCGTATCGGTCAACGCAAAATTCAAGCATGTCGGAATCCCCCGGCACCGGTTCCCACTCACACCATGGTGGCGGTGGTAGCAACAGAGATGATGATCGACACGACTCCACGACCAACAAT 1158 51.38 MEGGDELHHHHRHLHHHNRPTFPFQLLEKKDDEASCSSSAYPSLAISADPPTSASRLQVTPSTSAEPSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSSYYNPNFSLQQPRRSLFPGIGLSPENTSTLLNFQSNSMGSMLQAKQELRDTSLEVSEGDEGTGRKRRPEQDLSPQQQMGSYLLQSSAGAIPATHGAQIPANFWMLTNTNNQVMGGDPIWTFPSVSNSALYRGTMSSGLHFMNFPTPMTLLPGQQLGSVIGIGSGGSSGANDGHLNMLTGLNPYRSTQNSSMSESPGTGSHSHHGGGGSNRDDDRHDSTTNN 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 195089 196246 + BLOR05294 Blo13g00013 68408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00013 386 MobiDBLite consensus disorder prediction 37 71 - -
Blo13g00013 386 ProSiteProfiles TCP domain profile. 78 132 IPR017887 -
Blo13g00013 386 MobiDBLite consensus disorder prediction 370 386 - -
Blo13g00013 386 MobiDBLite consensus disorder prediction 215 236 - -
Blo13g00013 386 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 13 384 IPR005333 GO:0003700
Blo13g00013 386 MobiDBLite consensus disorder prediction 335 386 - -
Blo13g00013 386 MobiDBLite consensus disorder prediction 72 90 - -
Blo13g00013 386 MobiDBLite consensus disorder prediction 37 90 - -
Blo13g00013 386 Pfam TCP family transcription factor 76 243 IPR017887 -
Blo13g00013 386 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 13 384 - -
Blo13g00013 386 MobiDBLite consensus disorder prediction 335 369 - -
Blo13g00013 386 MobiDBLite consensus disorder prediction 208 241 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00013 - - - csv:101221049 488.804
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo04g00768 Blo13g00013 CCT
Blo04g00768 Blo13g00013 ECH
Blo13g00013 Blo15g00307 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00013 Blo-Chr13:195089 Blo17g00570 Blo-Chr17:10478760 3.18E-41 dispersed
Blo07g00441 Blo-Chr7:8806076 Blo13g00013 Blo-Chr13:195089 1.49E-31 transposed
Blo19g00306 Blo-Chr19:19546337 Blo13g00013 Blo-Chr13:195089 1.55E-31 transposed
Blo13g00013 Blo-Chr13:195089 Blo15g00307 Blo-Chr15:3443093 0 wgd
Blo13g00013 Blo-Chr13:195089 Blo16g01121 Blo-Chr16:39702350 2.88E-94 wgd
Blo13g00013 Blo-Chr13:195089 Blo04g00768 Blo-Chr4:7327486 1.01E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g537 Blo04g00768 . Bda06g00547 Bda15g00599 Bpe12g00551 . . Bma12g00998 Cmo13g01176 . Cma10g00186 . Car10g00176 Car11g00147 Sed08g0209 Cpe20g00029 . Bhi02g00330 Tan09g2130 Cmetu02g1507 . Hepe09g0125 . . Cla06g01596 Cam06g1770 Cec06g1822 Cco06g1829 Clacu06g1733 Cmu06g1677 Cre06g2493 . . . Cone19ag0075 Lsi02g00060 Csa01g00533 Chy12g01554 Cme12g02008 Blo13g00013 Blo15g00307 . Bda14g00846 Bpe07g00785 Bpe15g00605 . Bma08g00216 . Cmo10g00203 Cmo11g00159 Cma13g01122 . Car13g00957 . . Cpe18g00799 . . . . . . . Cla04g01209 Cam04g1275 Cec01g1783 Cco01g1830 Clacu04g1303 Cmu04g1279 Cre01g1570 Lsi06g01472 Csa01g00228 Chy02g02504 Cme02g01890
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13103 PF03634 TCP 3.20E-40 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00013 Blo_Chr13 FPKM 27.079103 28.607529 4.410687 4.779882 12.658611 11.158885 12.872097 1.057931 0.66677 0.750164