Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00026 ATGTTACGAGCAAAGCAGATAAGCAATCTTTCAAGCGGTGCTAGATCGTTTTTTCTGTCTGGATCACGATCTAATGCGGCAGATGGAAGTTCATGTGCCTGCTCTGAAGATGAAACTTGTGTTTCCCAAAGGCAGCAATCAAGGAATGAATGTTTAGTCACTCAGAAGACACCCCGCTTGGCAGCAAAAACTTCTGCTAAAGTGATCCCTTTGATACCGAGAGATGTAGCTAAAGTAATTGTGTCACATCCTGATACAACTCCCATATCTTCTGGAAGACCAGAGTGTGTAAATAATTCAAGTTGCCCAGAATCTTCTCATGCTGACCAGTTTGTTAAGGGGAATACTGCTGCTGTGAACTTCCTGTCTGATTTAGCAAATTATAAGGTTCCTTTGTCAAACGGAGGTGGAACACACGTCTCGACCAAGAACTGCTTGAATAATTCGCTTTCAAATGCGAAATCATTGAATGTCTCGCAAGTGAAAAGAGAAAGCATTACCAATTTTTGTCCCAATTCATCATCTGAGATAGCAGTAGATTCCAAATCTAGAGGAAACAGTAATAATGGCTCAAAGGGTAAAAGTGACAAGTCTAGCTCTCTTAAAGATTCAAAGCAAGTCCGATATACTGGGTCTGACAGCACATCATCTGATAGTCGTGGTAGGAAAAGTTATCTTCAGAAATCAAAAGTACATTCTAACCCTTTAGTGTCTAATTATAATTATAATGCACAGTCAGCAAGTGTAGAGTATGTTTCTAAAAGTTCCAACAGTGTAAAAGCTGCAGCCCCCAAGACAAAGCAGTTCGGTAATACATTGCAAGTTTTCGACAGTGTTTCTCATATACTAAGACACAATAAATGGGGCCCTTCTGCTGAAGAAGCTCTTGGAAAGCTTAATTGTTCGATAGATGCCTTTCAAGCAAACCAAATTTTAAAGCAGTTACAAGATCATTCTGTCGCCCTTGGTTTTTTCCATTGGTTAAAGCAGCAATCAGGCTTCAGGCATGATGGGCACACTTATACAACTATGGTCGGCATCCTTGGTCGAGCCAGACAATTCGATGCGATCGACAGACTACTTGATCAGATGGTCAAGGATGGTTGCCAGCCTAATGTCGTGACTTATAATCGTCTAATTCATTGTTATGGTCGAGCTAACTACTTGAAAGAAGCTATTTATGTGTTCAATCAAATGCATGAAGCTGGATGCGAACCGGACCGAGTTACCTTCTGCACACTCATTGACATCCATGCTAAAGCCGGGTTTCTTGATATTGCAATGTGCATGTATAAGAAAATGCAGGAGGCTGGACTTAGCCCGGACACTTTTACTTACAGTGTGATAATCAATTGCCTTGGAAAAGCTGGTCATCTGAATGCTGCCCATCGGATTTTCTGCGAAATGGTTGATCAGGGCTGTGTTCCCAATTTAGTCACCTATAATATTATGATTGCTCTGCAAGCCAAAGCCAGGAACTATAACATTGCATTGAAGCTTTATAGAGACATGCAGAATGCAGGTTTTCAGCCTGACAAAGTGACTTACAGCATAGTTATGGAGGTGCTTGGCCATTGTGGCTATCTTGAGGAGGCAGAAGCTGTGTTTGTTGAGATGAGACAGCAGAATTGGGTGCCGGATGAGCCTGTTTACGGCCTTTTGGTGGACTTGTGGGGAAAGTCCGGTAATGTTGAAAAGGCTTGGGAGTGGTATCATTCTATGCTCAGTGCTGGTTTGAAGCCAAACGTTCCGACCTGCAATTCTATGCTCAGTGCTTTCCTCAGAGTCCACCGACTCTCTGATGCCTACAATTTGCTGCAAACAATGGTGTCTTTGGGTCTAAAACCTTCCCTTCAAACATATACTTTACTACTCAGTTGCTGCACAGATGCAGAATCATCATTCAACATGGGATTTTGTTGTGAATTAATGGCCATTACAGGCCATCCAGCTCATAAATTTCTCGTTTCTCTTCCCTCGCCCGGACCCACTGGCCAAAATGTTCAAGATCACATGAGCAAGTTTTTAGATATGATGCATAGTGAGGATAGAGAGAGCAAGAGAGGGATTGTAGATGCTGTGGTGGATTTTCTTCACAAATCGGGACTTAAAGAAGAGGCCGGGTCGGTTTGGGAGGCGTCTGTTCTGAAAAACATCTACCCAGAAGCCGTTAGGGAGAAGAGCTCATGCTATTGGCTCATCAACCTGCATGTGATGTCTGATGGTACGGCAGTGACAGCTCTGTCCCGGACATTGGCATGGTTCCGCCGTCAAATGATGATGTCTGGGGTTGGTCCTGTCCGGATCGATATCGTGACCGGGTGGGGCCGGCGAAGCCGGGTGACAGGTAATTCGCTCGTGAGACAATCGGTTCAGGATCTTCTAAGCATTTTTAGCTTCCCATTTTTCACTGAGAATGGGAATTCTGGATGTTTTGTTGGTTGTGGAGAGCCTCTCAATAGATGGTTGCTCCAATCTTGTGTGGAGAGAATGCATTTACTCTGA 2505 43.59 MLRAKQISNLSSGARSFFLSGSRSNAADGSSCACSEDETCVSQRQQSRNECLVTQKTPRLAAKTSAKVIPLIPRDVAKVIVSHPDTTPISSGRPECVNNSSCPESSHADQFVKGNTAAVNFLSDLANYKVPLSNGGGTHVSTKNCLNNSLSNAKSLNVSQVKRESITNFCPNSSSEIAVDSKSRGNSNNGSKGKSDKSSSLKDSKQVRYTGSDSTSSDSRGRKSYLQKSKVHSNPLVSNYNYNAQSASVEYVSKSSNSVKAAAPKTKQFGNTLQVFDSVSHILRHNKWGPSAEEALGKLNCSIDAFQANQILKQLQDHSVALGFFHWLKQQSGFRHDGHTYTTMVGILGRARQFDAIDRLLDQMVKDGCQPNVVTYNRLIHCYGRANYLKEAIYVFNQMHEAGCEPDRVTFCTLIDIHAKAGFLDIAMCMYKKMQEAGLSPDTFTYSVIINCLGKAGHLNAAHRIFCEMVDQGCVPNLVTYNIMIALQAKARNYNIALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGYLEEAEAVFVEMRQQNWVPDEPVYGLLVDLWGKSGNVEKAWEWYHSMLSAGLKPNVPTCNSMLSAFLRVHRLSDAYNLLQTMVSLGLKPSLQTYTLLLSCCTDAESSFNMGFCCELMAITGHPAHKFLVSLPSPGPTGQNVQDHMSKFLDMMHSEDRESKRGIVDAVVDFLHKSGLKEEAGSVWEASVLKNIYPEAVREKSSCYWLINLHVMSDGTAVTALSRTLAWFRRQMMMSGVGPVRIDIVTGWGRRSRVTGNSLVRQSVQDLLSIFSFPFFTENGNSGCFVGCGEPLNRWLLQSCVERMHLL 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 424844 427348 + BLOR05307 Blo13g00026 68421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00026 834 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 547 581 IPR002885 -
Blo13g00026 834 Gene3D Tetratricopeptide repeat domain 423 539 IPR011990 GO:0005515
Blo13g00026 834 PANTHER BNAA07G31720D PROTEIN 1 834 - -
Blo13g00026 834 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 477 511 IPR002885 -
Blo13g00026 834 SUPERFAMILY SMR domain-like 732 812 IPR036063 -
Blo13g00026 834 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Blo13g00026 834 ProSiteProfiles Smr domain profile. 734 815 IPR002625 -
Blo13g00026 834 TIGRFAM PPR: pentatricopeptide repeat domain 514 548 IPR002885 -
Blo13g00026 834 TIGRFAM PPR: pentatricopeptide repeat domain 479 512 IPR002885 -
Blo13g00026 834 TIGRFAM PPR: pentatricopeptide repeat domain 374 407 IPR002885 -
Blo13g00026 834 TIGRFAM PPR: pentatricopeptide repeat domain 585 617 IPR002885 -
Blo13g00026 834 TIGRFAM PPR: pentatricopeptide repeat domain 444 477 IPR002885 -
Blo13g00026 834 TIGRFAM PPR: pentatricopeptide repeat domain 339 373 IPR002885 -
Blo13g00026 834 TIGRFAM PPR: pentatricopeptide repeat domain 550 583 IPR002885 -
Blo13g00026 834 TIGRFAM PPR: pentatricopeptide repeat domain 409 443 IPR002885 -
Blo13g00026 834 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 512 546 IPR002885 -
Blo13g00026 834 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
Blo13g00026 834 PANTHER OS03G0856100 PROTEIN 1 834 - -
Blo13g00026 834 Pfam PPR repeat family 476 522 IPR002885 -
Blo13g00026 834 Pfam PPR repeat family 581 628 IPR002885 -
Blo13g00026 834 Pfam PPR repeat family 371 417 IPR002885 -
Blo13g00026 834 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Blo13g00026 834 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Blo13g00026 834 SUPERFAMILY HCP-like 372 580 - -
Blo13g00026 834 Gene3D Tetratricopeptide repeat domain 286 422 IPR011990 GO:0005515
Blo13g00026 834 MobiDBLite consensus disorder prediction 177 195 - -
Blo13g00026 834 Pfam PPR repeat 438 470 IPR002885 -
Blo13g00026 834 SMART SMR_2 731 817 IPR002625 -
Blo13g00026 834 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 582 616 IPR002885 -
Blo13g00026 834 MobiDBLite consensus disorder prediction 204 230 - -
Blo13g00026 834 MobiDBLite consensus disorder prediction 177 230 - -
Blo13g00026 834 Pfam PPR repeat 340 369 IPR002885 -
Blo13g00026 834 Pfam PPR repeat 550 579 IPR002885 -
Blo13g00026 834 Gene3D Tetratricopeptide repeat domain 540 754 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00026 - - - jre:108999221 1154.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo13g00026 Blo15g00297 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00026 Blo-Chr13:424844 Blo17g00620 Blo-Chr17:13041538 3.83E-17 dispersed
Blo03g00115 Blo-Chr3:3497671 Blo13g00026 Blo-Chr13:424844 1.79E-47 transposed
Blo04g00953 Blo-Chr4:11596760 Blo13g00026 Blo-Chr13:424844 6.30E-08 transposed
Blo05g00609 Blo-Chr5:16402952 Blo13g00026 Blo-Chr13:424844 7.05E-08 transposed
Blo15g00393 Blo-Chr15:5503577 Blo13g00026 Blo-Chr13:424844 3.84E-08 transposed
Blo15g00632 Blo-Chr15:16590850 Blo13g00026 Blo-Chr13:424844 1.64E-42 transposed
Blo13g00026 Blo-Chr13:424844 Blo15g00297 Blo-Chr15:3296822 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g487 . . Bda06g00556 . Bpe12g00560 . . . . . . . . . Sed12g1925 . . Bhi02g00357 Tan09g2169 Cmetu02g0830 . Hepe09g0143 . . Cla06g01612 Cam06g1790 Cec06g1840 Cco06g1847 Clacu06g1750 Cmu06g1694 Cre06g2511 Cone2ag0866 Cone16ag0141 Cone13ag0093 Cone19ag0096 . . . . Blo13g00026 Blo15g00297 . . Bpe07g00797 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01494 Csa01g00208 Chy02g02524 Cme02g01910
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009833 1 1 2 0 2 3 0 1 1 1 1 1 0 1 1 0 1 4 0 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00026 Blo_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0