Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00033 ATGACCATTTCCCCAAGCTCCTCACCATACTCTTTCCTATTCTTCTCAATCTCATTACTACTTCTATCTTCACCCTGCCTTGCGGCCGATCCCGACCCGTTACAGGACTTCTGCGTCGGAGACTTGAATTCTACTCTAGGCATCAATGGCCTCCCTTGTAAACCAGTATCTCAAGTAACTTCAGCCGATTTCTTCTTTGATGGGTTTGTCAAAGCGGGGGACACTGGTAATGTATTTGGTATAGGGGTTTCACCCGGAAACGTTCTTGCTTTTCCGGGATTAAACACCCTCGGCATATCGATGAATCGGGTTGATCTTGCTCCGGGGGGGATGAACCCGCCCCACTCTCATCCTAGATCTACTGAGACTGGTGTGATTATTGAAGGAAAGGTGCTTGTGGGATTTGTGAGTACAAGCAATGTGTTCTATTCCAAGGTTTTGGGTCCCGGGGAGATGTTTGTGATTCCTAGAGGACTCGTTCATTTTCAGAAAAATGTTGGGTATGGAAAGGCCTTTCTTTTGACGGCTTTCAACAGTCATTTGGCAGGCACTGTGATTGTGCCTCTCACCCTCTTTGCCACACAGCCTGCTATTCCTAACGACGTTTTAACCCAAGCTTTCCAGATTGGAGAAAATGTTGTCGATGGCATCAGGTCCAAATTTGCTTGA 669 46.94 MTISPSSSPYSFLFFSISLLLLSSPCLAADPDPLQDFCVGDLNSTLGINGLPCKPVSQVTSADFFFDGFVKAGDTGNVFGIGVSPGNVLAFPGLNTLGISMNRVDLAPGGMNPPHSHPRSTETGVIIEGKVLVGFVSTSNVFYSKVLGPGEMFVIPRGLVHFQKNVGYGKAFLLTAFNSHLAGTVIVPLTLFATQPAIPNDVLTQAFQIGENVVDGIRSKFA 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 525973 526641 - BLOR05314 Blo13g00033 68428

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00033 222 Pfam Cupin 80 214 IPR006045 -
Blo13g00033 222 SMART Cupin_1_3 67 215 IPR006045 -
Blo13g00033 222 PRINTS Germin signature 178 193 IPR001929 GO:0030145
Blo13g00033 222 PRINTS Germin signature 115 135 IPR001929 GO:0030145
Blo13g00033 222 PRINTS Germin signature 145 165 IPR001929 GO:0030145
Blo13g00033 222 SUPERFAMILY RmlC-like cupins 30 221 IPR011051 -
Blo13g00033 222 CDD cupin_OxOx 30 221 - -
Blo13g00033 222 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY T MEMBER 1-RELATED 15 221 - -
Blo13g00033 222 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 15 221 - -
Blo13g00033 222 Gene3D Jelly Rolls 29 222 IPR014710 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00033 - - - jre:108999231 306.219
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00033 Blo-Chr13:525973 Blo18g00681 Blo-Chr18:13765073 5.77E-69 dispersed
Blo06g01049 Blo-Chr6:33842097 Blo13g00033 Blo-Chr13:525973 4.84E-66 transposed
Blo17g00658 Blo-Chr17:15947746 Blo13g00033 Blo-Chr13:525973 1.46E-68 transposed
Blo13g00033 Blo-Chr13:525973 Blo16g01144 Blo-Chr16:39960914 2.43E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g471 . . . . Bpe12g00568 . . . . . Cma10g00163 Cma11g00176 . . Sed08g0183 . . Bhi02g00376 Tan09g2181 Cmetu02g1544 . Hepe09g0155 . . Cla06g01623 Cam06g1804 Cec06g1855 Cco06g1861 Clacu06g1764 Cmu06g1708 Cre06g2526 . . Cone13ag0100 Cone19ag0104 . . . . Blo13g00033 . . . . . . Bma08g00195 . Cmo10g00175 Cmo11g00133 . . . . . . . . . . . . . . . . . . . . Lsi06g01504 Csa01g00195 Chy02g02537 Cme02g01921
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004893 1 2 1 1 1 2 0 2 2 2 1 2 1 2 2 1 2 3 0 2 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00033 Blo_Chr13 FPKM 12.879174 15.689828 9.280676 10.333191 8.852055 7.342935 8.249852 17.569685 17.110924 17.043344