Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00055 ATGTCTTCCGTTGTCGGCACTCTGCTTCAACCTCCGTCCACTTCTTCTAAGCACACCGACAGTTGTTGTTTCGATCCCATCAATCGCCGCCGTCTTCTCGCCGCCGTAACTTTCTCCATCCCCGCCATTAATTTCACAATCCCTCCTCACCCAACTTCTCCCATTTGCGTTTCCATCCCTGTCGCCGAGGCTCGTGGTCTGTTGCGGATGCCCCCTTTGCGGCTCAACAACCGGTACTTTCTGGTGAGGGCCGGGGAGTCTGAATTCGAGAGTTTAGGGATAATCAACACCAACCCGGTTTCAAAGACATCAGTTGATAGTGGGCTATCTGAAAAAGGGAAAAAGCAGATTTTGAAATCGGCTTTTGAGTTGCAGGCAATGGGAGCTTGTGAAAAGGGGTGTTGGATATGGCCTTCTATTACCCAGAGAGCTTATCAGACTGCAGAGATCATTGCATCAGTTAATGGAATCAGTAGAAGTTACATAGTTCCAGAGTATAGTTTTCTCGATGCGCGGGGGCTCGGAGCTTACGAAGGGAAGAACTTGGAATCTGTTTCAGAGGTCTATGCCTCGGATAACATTTCTTCTACCATTAAACCTCCGCCGATTGACGACGGGACTCCGAACGAGAGTGTTTCCGATGTCTTTGTTCGCATAACTCAACTGATGTCGATTCTTGAGACCCAATACTCTGGTGAAACTGTTATTATCGTCTCGCCGGATTCCGACAACTTGAGTGTTCTTCAATCCGGTTTGGTTGGACTCGACTTGAAAAGGCATCGGGAGCTTTCATTTGCAGCCGGGGAAGTTCGTTTTGTCGACTCGAGTAGCATTCCTCCTTACAAACAACCCACATCCGCAGCGCAGTCTTTTTTTTTTTTGTTTTTGTTTTTTTGCGTCAATGTGTTTGTACATTTCTCTTTGGTAAAGCAGTTTGTGCTAATTGTAATTGATTTTTGTTCGGTGAAAAATGTTCTTGCAGGTATGATGGGTTTTTCTTGTCGATGCTCGCGACTAGCGTGTATCCTTCTCCATGTATTGCATGTTGATGTTTCGGTTTTGAGTCTAATAATTGTAGCGATTAACTGGAGGAGGTACCATACTTGTTTACATCCACTGCACATATGGATCATGGTTGATTATACTGCTGTTTTTATTTTCCGTCTATTGATGTTTGTAGATAATGGTCTTGCAGCTGGAATGGGTTTGGATTTTGGATGGCAGCAGAGATATGCTCGTTTTTGTGGAAGATTAGTAGTACTTTCGATTCTTTCTTTGCTTCTCTATCCATTTCTTTGGACTTGGACCATAATTGGTACCTTGTGGTTCAGAGAAGCTAAAAATTGTCTGCCAGAAGAAGGTCAGAAATGGGGCTTTCTTATTTGGTTGCTTTTTAGCTACTGTGCGCTCCTCTCTATTGCTTGCATGTCATTGGGAAAGTGGTTGACTCGTAGACAAGCACACTTATTACGTGCTCAACAAGGGATACCAGTGTCAGAGTATGGGGTTTTAGTTGACATGATACGAGTGCCAGAATGGGCATTTGAAGCTGCAGGACAAGAATTAAGAGGCATGGGCCAAGATGCTGCTGCATATCATCCTGGACTTTACTTGACTCCTGCTCAGAGGGAAGCTGTGGAAGCACTCATTCAGGAACTTCCAAAGTTCAGGTTGAAAGCTGTTCCAACTGATTGTAGTGAATGCCCCATTTGTCTTGAAGAATTCCATGTGGGGAATGAGGCAAGTTTTATTGTTCGTGGACTGCCTTGTGCTCATAATTTTCATGTAGAATGTATCGATGAGTGGCTTCGACTGAACGTGAAATGTCCTCGATGCCGCTGCTCTGTCTTCCCAAATCTCGATCTTAGTGCTCTATCCAGTCTTCAAGCTGATACAGAACGGTCATCTGCTACTGTCGTTACAGCTAACCGCTATGTTCGAGCCCAACCTTCGAGCCAGAGCTATCTCTTAAGGTTGCAGTGTATGCTTCGCCAAGTGCGGACAGAAAATGCCGAGGCAAGCTCCGACGCAGCTAACTCTTTTGAAGCTGTTGAGAACGGTCGTATTTCTATAGCTACTCAGCTTTCACCAAGCATAGAATCGCCTTCCACTAGACGCAATGTTGCTGGTCAGTCTACCTCCTCATCACAACTGTAA 2157 45.29 MSSVVGTLLQPPSTSSKHTDSCCFDPINRRRLLAAVTFSIPAINFTIPPHPTSPICVSIPVAEARGLLRMPPLRLNNRYFLVRAGESEFESLGIINTNPVSKTSVDSGLSEKGKKQILKSAFELQAMGACEKGCWIWPSITQRAYQTAEIIASVNGISRSYIVPEYSFLDARGLGAYEGKNLESVSEVYASDNISSTIKPPPIDDGTPNESVSDVFVRITQLMSILETQYSGETVIIVSPDSDNLSVLQSGLVGLDLKRHRELSFAAGEVRFVDSSSIPPYKQPTSAAQSFFFLFLFFCVNVFVHFSLVKQFVLIVIDFCSVKNVLAGMMGFSCRCSRLACILLHVLHVDVSVLSLIIVAINWRRYHTCLHPLHIWIMVDYTAVFIFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRLVVLSILSLLLYPFLWTWTIIGTLWFREAKNCLPEEGQKWGFLIWLLFSYCALLSIACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPEWAFEAAGQELRGMGQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEASFIVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSSLQADTERSSATVVTANRYVRAQPSSQSYLLRLQCMLRQVRTENAEASSDAANSFEAVENGRISIATQLSPSIESPSTRRNVAGQSTSSSQL 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 822264 829594 + BLOR05336 Blo13g00055 68450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00055 718 SMART ring_2 568 612 IPR001841 -
Blo13g00055 718 SUPERFAMILY RING/U-box 550 621 - -
Blo13g00055 718 Gene3D - 74 279 IPR029033 -
Blo13g00055 718 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 354 695 IPR044793 GO:0004842|GO:0010182
Blo13g00055 718 MobiDBLite consensus disorder prediction 1 20 - -
Blo13g00055 718 MobiDBLite consensus disorder prediction 694 718 - -
Blo13g00055 718 SUPERFAMILY Phosphoglycerate mutase-like 79 274 IPR029033 -
Blo13g00055 718 Pfam Histidine phosphatase superfamily (branch 1) 80 270 IPR013078 -
Blo13g00055 718 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 354 695 - -
Blo13g00055 718 Pfam Ring finger domain 567 613 IPR001841 -
Blo13g00055 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 537 618 IPR013083 -
Blo13g00055 718 ProSiteProfiles Zinc finger RING-type profile. 568 613 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00055 Blo-Chr13:822264 Blo06g00115 Blo-Chr6:4705444 3.87E-11 dispersed
Blo13g00055 Blo-Chr13:822264 Blo03g01452 Blo-Chr3:41149327 1.76E-10 transposed
Blo13g00055 Blo-Chr13:822264 Blo08g00158 Blo-Chr8:1629110 1.97E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00055 K16284 - zju:107407761 595.119