Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00056 ATGAAGAAATCGTTATCCAGAAACTCGGATTCCTCCGCTCAAATGGATTCGCCTCACTCTCCTCTACCATTTCATTCGCCTCTAAGATCCGACGCCGGTGATCCTCCCGAAACGTCTCCGTACGCCTCGCCTGAGAATTCACCGCATAAGGTAAATGAAAACGCCAAAGGAATCGTCGCCGTTGATAAGAGCACTCAGTTCACGCCGAATCCTTCTCCATTAACCGACCGCCAAAAACCGCCGGAAAACCAAAATGCGACGCTGGGGAAGTCGACGTCTTCTGTGGTAGTGTTCAATAGAGCGACGAGGGATGAGATTCCGCCTTCCGTTACTAAGGTGGGACCTCCCGGAGTCGGAACAGGTGATGACGGTGGTGGTGGGAGGTCATCTCGAGGGACGAGTTCGGTCCTAAGGAGGTCGAGGAAGGACGAGATGGTCAAGAGGGCCGCGTTGGGGTTTAGACTGAGCGAAGTAGTGCTGTGCTTGATTTCGTTTTCGGTTATGGCGGCAGATAAGACTCAAGGATGGAGCGGTGACTCCTTTGATCGCTATAAGGAATATAGATATTGTCTGTCTGTGACTGTTATCGCATTTGTATACTCGGGGTTGCAGGCGTATGATCTTGCCTATCATCTCCTCACAGGGAAACAAGGGTTCCACAACTATCTCCATTATCACTTTGATTTTTTCATGGATCAAGTTCCTGGGGATGTTGTTCTCGATCTCTCAAACATGAATGAAAAGACCATCAAGCTTGGAGGCGGTCTTCGTCAGGACTGCGATGCTATTTCTGTCACGAAGGCTGGAAACTTCAGATTCTCCAAGCCAAATAAATATTGGGTTGAAAGTTCTCAAAAGAGGTATGTACCTGCGGCAGAGGATTCTGTCCTCGGAATCGTGGTAGATGCTAAACCTGATAACTTTCTGGTGGACATAAAAGGGCCTGCACTAGCTTTTCTACCCGTGCTTGCATTTGAAGGGGGAACAAGGCGTAACATCCCAAAGTTTGAGGTGGGTACATTGCTTTATGCTCGGGTCGTCAAGGCAAACTGTGTTATGAACCCTGAATTGGCCTGCACTGATGCCAACGGGAAGGCTGTGGAATTCGGCCCCCTTAGAAATGGATACATGTTCGAGTGCTCCACTGGATTATCAAGATTGTTACTAAGCTTGCCAACATGTCCAGTTCTTGAGGCTCTAGGGATGAAGTTATCTTTCGAGATCGCAGTTGGTTTGAACGGCCGTGTTTGGGTAGTAAATTCTTCATCTCCTACCACAGTCATCATCATTGCTAATGCAATCATGAACTCAGAATCTTTGAGTGATGTACAGCAGAGAATAATGGTGGATAAACTGCTGAAAAATTTTAAGATCTCAAGTTGA 1383 47.51 MKKSLSRNSDSSAQMDSPHSPLPFHSPLRSDAGDPPETSPYASPENSPHKVNENAKGIVAVDKSTQFTPNPSPLTDRQKPPENQNATLGKSTSSVVVFNRATRDEIPPSVTKVGPPGVGTGDDGGGGRSSRGTSSVLRRSRKDEMVKRAALGFRLSEVVLCLISFSVMAADKTQGWSGDSFDRYKEYRYCLSVTVIAFVYSGLQAYDLAYHLLTGKQGFHNYLHYHFDFFMDQVPGDVVLDLSNMNEKTIKLGGGLRQDCDAISVTKAGNFRFSKPNKYWVESSQKRYVPAAEDSVLGIVVDAKPDNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEVGTLLYARVVKANCVMNPELACTDANGKAVEFGPLRNGYMFECSTGLSRLLLSLPTCPVLEALGMKLSFEIAVGLNGRVWVVNSSSPTTVIIIANAIMNSESLSDVQQRIMVDKLLKNFKISS 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 836895 846048 + BLOR05337 Blo13g00056 68451

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00056 460 MobiDBLite consensus disorder prediction 59 99 - -
Blo13g00056 460 Gene3D - 290 366 IPR012340 -
Blo13g00056 460 PANTHER EXOSOME COMPLEX COMPONENT RRP40 234 454 - -
Blo13g00056 460 SUPERFAMILY Ribosomal L27 protein-like 234 286 - -
Blo13g00056 460 MobiDBLite consensus disorder prediction 1 139 - -
Blo13g00056 460 Gene3D K Homology domain, type 1 368 455 IPR036612 GO:0003723
Blo13g00056 460 CDD S1_Rrp40 287 372 IPR037319 GO:0003723
Blo13g00056 460 SUPERFAMILY Nucleic acid-binding proteins 286 378 IPR012340 -
Blo13g00056 460 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 374 457 IPR036612 GO:0003723
Blo13g00056 460 Pfam Casparian strip membrane protein domain 146 234 IPR006702 -
Blo13g00056 460 PANTHER PNAS-3 RELATED 234 454 IPR026699 GO:0000178|GO:0003723
Blo13g00056 460 Pfam KH domain 375 420 IPR004088 GO:0003723
Blo13g00056 460 Gene3D - 226 289 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00056 K03681 RRP40, EXOSC3; exosome complex component RRP40 - vvi:100241656 374.015
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo13g00056 Blo15g00270 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00056 Blo-Chr13:836895 Blo17g00332 Blo-Chr17:3461801 1.99E-27 dispersed
Blo13g00056 Blo-Chr13:836895 Blo15g00270 Blo-Chr15:2910446 4.38E-123 wgd
Blo13g00056 Blo-Chr13:836895 Blo18g00340 Blo-Chr18:3545961 2.93E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g737 . . Bda06g00592 Bda15g00571 Bpe12g00594 . . Bma12g01034 . . Cma10g00127 Cma11g00098 Car10g00118 Car11g00098 Sed08g0128 . Cpe04g01551 Bhi02g00437 Tan09g2240 Cmetu09g0010 . Hepe09g0197 . . Cla06g01659 Cam06g1844 Cec06g1895 Cco06g1900 Clacu06g1803 . Cre06g2563 . . Cone13ag0136 . . . . . Blo13g00056 Blo15g00270 . . Bpe07g00834 . . Bma08g00168 . Cmo10g00133 Cmo11g00098 . . . . . . . . . . . . . . . . . . . . Lsi06g01549 Csa01g00155 Chy02g02575 Cme02g01965
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014281 1 1 1 1 1 0 2 0 0 0 0 0 0 1 1 0 0 2 1 0 1 1 1 1 1 0 1 2 1 1 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00056 Blo_Chr13 FPKM 2.348143 1.995395 9.292498 10.917036 15.734395 14.864438 15.424084 10.955131 11.325505 10.092099