Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00083 ATGGTCTCAAGAGTTCAGACCGTTGCTTGGTTGGGCAACGGTCTGAGACCGTTGCCCAGCGCCCAGCTCCCACCGACGGAGCTGGAAACCAACGGAGCTGGAAACCGGACGACAAGTTCTGAGTCACCAAGTTCGCCGTCATTTCTGAGTCACCATGTTCGCCGTTGTTTGCCTTTGAGATTCGTCAAGGGTGGCAGGCTGGCTCGCCGATCTTTGCCAAGGGTCACCAGCCAGCAAGGACACCACCGACGCCCGACGGAGCTTCCAAGTAGGGATAGGGGTACCGAGTTCGTTCGCCAGGGACAGGGGACAAGGGTGCCAAGTTCTGGCTTTCGGGATTCGCCAGAGCCCGCCGGCCCGGCCAGGCGAGTGGGTATACTGTTGCTTCCACAGATCAATCCATTGGTTGGAGAAAAGGCAATATTATGCTTGGCCATAATTGCATCAATTGCTTATGCTATGCCCTATGGATTTGCCTGGGCAAGTTGGGCGAAAGCACAAGGATTTGTTGCAGGGGTGGAGTCCATTGCAAGTTTAGTATCACCTCTGGCCATGAGTCCACTGACGTCTTGGTTTCTATCCAGTGATGCTCCTTTTGACTGCAAAGGTTTCAGCATTGTAATGGCATCCATAAGCATGGTATCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGATTTCAGACATTTTAATTTCACAGATGGTTTCCGTATCCAACCATTTCTGCTTCAAACTGCCCCCAAATATATCCCCAGCTCCGGTTGTAATCTTTACATTTTCCCACTTCCCAAACAAAAGGAATCACTTTAATCCTTACTCCTCCCCATCCTCCTCATTTTCGTCTATTTTCTGTTCATTTTCAACTCGAGCAAGTGTAACTTCAGCGCCCTCGCCCTCGCCCTCGCCCTCGCCTTCGTCCTATCCGTCTTCTTTGTCTTCCATTTCCGCCGACAACAATCTCTGGATGGTTGTCGTGGAAGGCCCTCCCGTAGGGATTGATTCCAAACCACAAGTAATCGATTATTATGTCAAGACTTTACAGAAAGTGTTGAAGAGTGAGAAAGATGCCCAGATGTGCATATATGACGCTTCTTGGGAAAACCATTTTGGCTTTTGCTGCCATATCGATGAACAAACTTCTCGCGAGCTCGCCCAATTACCGGAGGTCTTACTTGTGAAGCCAGATACAGATTTCAACTCCATAGAAAAGGATTATAGTTCTATAAAAACTCCATCTAGTTCCTTACAGAATCCCCAAGGTCATGGTAATCTGCTATTTCCCAGCGGAAAAACTAAACAATGGCTTGTTCAAATTGACAAGCCTAATGTGGGAATTGTTACAAAGGCTCAAATGGTTGATTTTTATGCTCAACTACTGTCCAAGGTTTTAGGAAATGAAAAGGATGCACAAATGTGTATATATCATGTTTCTTGGCAATCCAACTTTGGCTTCTGCTGTGAACTTGTTGAGGACTGCGCAAGGGAACTTGCCAGAGTACCTGGTGTTTTGTCTGTTCAGCCGGATAGGAATTTCGAGTCTGAGAATAAGGATTACGAAGGGAATAATCTCCGAGGTTTTATGGATTCAATGAATTCCTCAGAGGCGACATCGGCACCCATCAAAACAAAGAAACTTTTTGTAACTGGCCTTTCATTTTATACGTCCGAGAAATCATTACGATCGGCATTTGAAGGGTTTGGCGAACTGGTTGAAGTCAAAATAATAATGGATAAGATATCTAAAAGATCCAAAGGATATGCATTTATAGAGTACACTACAGAGGAGGCTGCAAGTGCTGCCCTCAAAGAGATGAATGGAAAGATTATCAATGGGTGGATGATAGTTGTTGATGTCGCAAAGCCTACCCCATCAAAATCTAGTCGACGCCCCAGACCAGCGGCGGAGGGTACTGGGACTGGCGCGGCTGCCTATCTGGTGGGCGTGAGCTGTGATGGGAGGCGGAGGGAGGCGGAGGAGGAGGAGCAGCTCCGGCTCAGCTGA 2013 47.74 MVSRVQTVAWLGNGLRPLPSAQLPPTELETNGAGNRTTSSESPSSPSFLSHHVRRCLPLRFVKGGRLARRSLPRVTSQQGHHRRPTELPSRDRGTEFVRQGQGTRVPSSGFRDSPEPAGPARRVGILLLPQINPLVGEKAILCLAIIASIAYAMPYGFAWASWAKAQGFVAGVESIASLVSPLAMSPLTSWFLSSDAPFDCKGFSIVMASISMVSLSPSLSLSLSLSLSISDILISQMVSVSNHFCFKLPPNISPAPVVIFTFSHFPNKRNHFNPYSSPSSSFSSIFCSFSTRASVTSAPSPSPSPSPSSYPSSLSSISADNNLWMVVVEGPPVGIDSKPQVIDYYVKTLQKVLKSEKDAQMCIYDASWENHFGFCCHIDEQTSRELAQLPEVLLVKPDTDFNSIEKDYSSIKTPSSSLQNPQGHGNLLFPSGKTKQWLVQIDKPNVGIVTKAQMVDFYAQLLSKVLGNEKDAQMCIYHVSWQSNFGFCCELVEDCARELARVPGVLSVQPDRNFESENKDYEGNNLRGFMDSMNSSEATSAPIKTKKLFVTGLSFYTSEKSLRSAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKPTPSKSSRRPRPAAEGTGTGAAAYLVGVSCDGRRREAEEEEQLRLS 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1299725 1305956 - BLOR05364 Blo13g00083 68478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00083 670 MobiDBLite consensus disorder prediction 14 49 - -
Blo13g00083 670 Gene3D - 518 664 IPR012677 -
Blo13g00083 670 MobiDBLite consensus disorder prediction 80 94 - -
Blo13g00083 670 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 431 517 IPR037045 -
Blo13g00083 670 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 309 403 IPR037045 -
Blo13g00083 670 MobiDBLite consensus disorder prediction 625 644 - -
Blo13g00083 670 MobiDBLite consensus disorder prediction 70 118 - -
Blo13g00083 670 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 547 625 IPR000504 GO:0003723
Blo13g00083 670 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 549 615 IPR000504 GO:0003723
Blo13g00083 670 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 361 636 IPR039206 GO:0016554
Blo13g00083 670 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 305 388 IPR039206 GO:0016554
Blo13g00083 670 SUPERFAMILY RNA-binding domain, RBD 542 638 IPR035979 GO:0003676
Blo13g00083 670 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 361 636 - -
Blo13g00083 670 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 305 388 - -
Blo13g00083 670 SMART rrm1_1 548 621 IPR000504 GO:0003723
Blo13g00083 670 MobiDBLite consensus disorder prediction 24 49 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00083 - - - vun:114191397 535.028
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00793 Blo-Chr5:29110396 Blo13g00083 Blo-Chr13:1299725 1.57E-13 dispersed
Blo09g00485 Blo-Chr9:16064260 Blo13g00083 Blo-Chr13:1299725 3.68E-26 dispersed
Blo12g00141 Blo-Chr12:9913032 Blo13g00083 Blo-Chr13:1299725 2.33E-17 dispersed
Blo13g00083 Blo-Chr13:1299725 Blo01g00297 Blo-Chr1:3689233 2.88E-16 dispersed
Blo17g00734 Blo-Chr17:22373720 Blo13g00083 Blo-Chr13:1299725 8.66E-07 dispersed
Blo13g00083 Blo-Chr13:1299725 Blo03g01431 Blo-Chr3:40894324 5.15E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g988 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00047 Csa01g00522 Chy12g01563 Cme12g02019 Blo13g00083 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010296 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00083 Blo_Chr13 FPKM 4.033153 4.342242 13.340957 13.91151 33.310383 38.416634 33.475368 6.624229 6.92823 6.487989