Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00089 TCCATAGTTTCCCTCTCTACCCTCTTTTTGTCTCTCCTCCTCGCCATTCTCTTCTCTCCAACGTCCACCCTTGCAAGCGAAACAAAGCTCCAAGGCCTCAACATCAACGCCATTGACAAGTGCTGGAGATTAAACCCAGACTGGAGAAGACACCGCCAGCAGCTGGCGACCTGCTCCGTTGGATTTGCAGGCAAGATGATCAACAATATAGGCAAGAATCTGCAACAGTACAGAGTTACAGACCCGAGCGATGACCCATTGAACCCGAAGAAGGGAACTCTCAGATATGGAGCCACCATGATTAAGGGCAAAGTATGGATCACATTTCAGAGAAACATGGTCATCAAACTCGAAAGACCGCTTCTCATCAGCAGCTTCACAGCCATTGACGGCCGAGGAGTTAGAGTCCATATAACTGGAAATGCGTGCTTGACAGTTTACAAGGAATCCAATATAATAATTCATGGTCTAGTAATCCACCACTGCAAGTCTCAAGCTGCAACCCAAGTGATGGGAACTAACGGGAAGATAGTGGGAATGGGCAATGTCGATGGCGATGCCATCCGGCTCGTCACGGCGTCAAAGGTGTGGATCGACCACAACACACTCTACCAGTGCCAGGACGGGTTGCTGGACGTAACAAGAGGGTCGACAGACATCACAATCTCGAACAATTGGTTTAGGGATCAAGACAAAGTTATGCTTTTGGGACATGATGATGGGTATGTTAGAGACAAGGACATGAGAGTCACTCTTGCTTTCAACCATTTTGGACCGAATTGCAACCAACGGATGCCTCGGATCCGACACGGCTATGCACATGTCATGAACAACCTATACCAGGGATGGACTCAATACGCCATTGGCGGTAGCATGAATCCGAGAGTTAAGAGTGAGGCCAACCTATTCATCGCGCCTAAATCTGGAAGCAAGGAGTTGATATGGACAACAGGAGGGCTGGGAGGGAAGAGCTCATGGAAGTTTTTCTCAGTAGGAGATGTTCTTGAAAATGGAGCTACTTTCAGTGAAGCAGGCACACAATTGAGCCTGAGGACAATAGCTGCAAAGCCAGGCTACAACGCCCAACAATGGCTCAAAGTAGCAGAAGCTAACTATGTAAGACAATTGACAAGCTCTGCAGGAGCTCTAAAATGCAGCAGAAATTCAAGATGC 1173 48.0 SIVSLSTLFLSLLLAILFSPTSTLASETKLQGLNINAIDKCWRLNPDWRRHRQQLATCSVGFAGKMINNIGKNLQQYRVTDPSDDPLNPKKGTLRYGATMIKGKVWITFQRNMVIKLERPLLISSFTAIDGRGVRVHITGNACLTVYKESNIIIHGLVIHHCKSQAATQVMGTNGKIVGMGNVDGDAIRLVTASKVWIDHNTLYQCQDGLLDVTRGSTDITISNNWFRDQDKVMLLGHDDGYVRDKDMRVTLAFNHFGPNCNQRMPRIRHGYAHVMNNLYQGWTQYAIGGSMNPRVKSEANLFIAPKSGSKELIWTTGGLGGKSSWKFFSVGDVLENGATFSEAGTQLSLRTIAAKPGYNAQQWLKVAEANYVRQLTSSAGALKCSRNSRC 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1548769 1550501 - BLOR05370 Blo13g00089 68484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00089 391 Gene3D - 35 384 IPR012334 -
Blo13g00089 391 PRINTS Pollen allergen Amb family signature 58 75 IPR018082 -
Blo13g00089 391 PRINTS Pollen allergen Amb family signature 326 350 IPR018082 -
Blo13g00089 391 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Blo13g00089 391 PRINTS Pollen allergen Amb family signature 184 205 IPR018082 -
Blo13g00089 391 PRINTS Pollen allergen Amb family signature 264 283 IPR018082 -
Blo13g00089 391 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Blo13g00089 391 PANTHER PECTATE LYASE 18-RELATED 20 388 IPR045032 GO:0030570
Blo13g00089 391 PANTHER PECTATE LYASE 20 388 - -
Blo13g00089 391 SUPERFAMILY Pectin lyase-like 32 385 IPR011050 -
Blo13g00089 391 Pfam Pectate lyase 141 303 IPR002022 -
Blo13g00089 391 SMART amb_all 112 309 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00089 Blo-Chr13:1548769 Blo11g00727 Blo-Chr11:9288708 5.48E-102 dispersed
Blo13g00089 Blo-Chr13:1548769 Blo16g00243 Blo-Chr16:5643367 4.86E-102 transposed
Blo13g00089 Blo-Chr13:1548769 Blo12g00125 Blo-Chr12:8720829 2.07E-98 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00089 K01728 - zju:107419631 560.066