Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00095 ATGGCGGATTGCTGCTGCGTAGGTGTTCCCGATTTACTTCCTCTTGCCACTTCCACATTTACTCCACTACAGAGAAGAAAAGTTTTCATTGGCATTTACTCCACTAGATGCTACTGTAGTCCTCGTCTTCAGTTGAAGAGGAAGCAAATTCGAGTCAGCTCAGCTTCTCTGAGCCGGTCGGAACCTCCGATTTCGACTTCTTTGTCTCTGTCTCTTCCAAATCAAACCAATTCCTCATGCATTTCTGAGCGACCGGATGATGGTTTCGTGGTTGTCAATTTCTATCACTTTGTGTTCATTAATGAGCCAGCAGCTGAGGTCGCCAAGCACCTCTCCTATCTGGAGGATCTCGACATTCGTGGCCGAATATATCTGAATTCTCAAGGCATCAATGCACAGTATAGTGGACCATCGAAGGATGCCTTTGCATATGTTCACTGGTTGAGAGGAGATGATAGGTTTTCTGATATCCAAGTTCAAATTTCACAAGCACTGAAAGGTCATGCCTTTCCAAAATTGAAGTTGCGTTACAAGCCATCACTAGTGCAGATGGAAGGAGGTTCTTCACATCTTCCTTTGCTGGACCCTTCAATGCGAGCAACACCGCTAGCACCTTTGGAATGGAGAAAAAGATTGGAAGCCAATAGGAACAACAATTCATCACATGACAATTGTGTTCTGCTGGATGTGAGGAATGGTTACGAGTGGGATATTGGTCACTTTCGTGGGGCTCAACGTCCGGATGTGGACTGCTTTAGAAGCACTTCATTTGGACTATCCCAAACTGAGGTAGCTGCTTCCGATCCGTTGGCTAACATTAGCAAAGAAAAAACAGATATATTAATGTACTGTACCGGGGGCATCCGATGTGATGTGTATTCAACAATTTTAAGAGAGAGGGGCTTTCAAAATTTATACACATTGGAAGGAGGAGTTTCTAATTATTTGAAAAATGAAGGTACAGCGGAATGGGTTGGCAATTTGTTCGTGTTTGATTCACGCCTCTCTCTACCCCCACCTTCCTCCAAGTCTGAGGCCGAGGCTGAAGCTCATAAAACTCCCCTAGATTTGGCGACTACTGGGTTTGCCAGATGCTATATATGCGCTTTTCAGGTCAGCGTGTTAAGGCACCGGAATTGTGTAAATCTTGACTGCAATCTGCTCTTTCTGTGCTGTAAGAACTGCCTTCTGGATTTGAAAGGATGTTGCTGTTCGAATTGCATTACTGCTCCTCGACTCCGACCTGTTTTAACAGGGAACCAGAGCAAAGCTCTACTTTACAGGGAAGAGAGAAAGTATGAGAATTATGGTACAATTAAGAAACTGATAAGGCAGTGCTGCGATTGCTTTATGTCGGATACACAAGCGGCTTGTAAATGTCCAATTCTGCCCAGTCCAGTCTCTGCAATATTGAGAGAGACATTCACACTTGAACATAAAGTACAGGAGTAG 1452 44.35 MADCCCVGVPDLLPLATSTFTPLQRRKVFIGIYSTRCYCSPRLQLKRKQIRVSSASLSRSEPPISTSLSLSLPNQTNSSCISERPDDGFVVVNFYHFVFINEPAAEVAKHLSYLEDLDIRGRIYLNSQGINAQYSGPSKDAFAYVHWLRGDDRFSDIQVQISQALKGHAFPKLKLRYKPSLVQMEGGSSHLPLLDPSMRATPLAPLEWRKRLEANRNNNSSHDNCVLLDVRNGYEWDIGHFRGAQRPDVDCFRSTSFGLSQTEVAASDPLANISKEKTDILMYCTGGIRCDVYSTILRERGFQNLYTLEGGVSNYLKNEGTAEWVGNLFVFDSRLSLPPPSSKSEAEAEAHKTPLDLATTGFARCYICAFQVSVLRHRNCVNLDCNLLFLCCKNCLLDLKGCCCSNCITAPRLRPVLTGNQSKALLYREERKYENYGTIKKLIRQCCDCFMSDTQAACKCPILPSPVSAILRETFTLEHKVQE 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1666316 1671288 + BLOR05376 Blo13g00095 68490

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00095 483 Gene3D - 195 353 IPR036873 -
Blo13g00095 483 ProSiteProfiles Rhodanese domain profile. 221 324 IPR001763 -
Blo13g00095 483 Pfam Rhodanese-like domain 213 316 IPR001763 -
Blo13g00095 483 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 87 436 IPR020936 -
Blo13g00095 483 Gene3D - 79 182 - -
Blo13g00095 483 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 87 436 - -
Blo13g00095 483 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 205 334 IPR036873 -
Blo13g00095 483 Pfam Rhodanase C-terminal 326 407 IPR022111 -
Blo13g00095 483 CDD RHOD_YceA 203 317 - -
Blo13g00095 483 SMART rhod_4 204 321 IPR001763 -
Blo13g00095 483 Pfam UPF0176 acylphosphatase like domain 90 179 IPR040503 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00095 - - - qlo:115962713 488.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00095 Blo-Chr13:1666316 Blo13g00668 Blo-Chr13:29413717 6.36E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g979 . . . . Bpe12g00626 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo13g00095 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo04g00468 . 447 753 Sulfurtransferasese/Rhodanese AT1G79230 77.9 3.8e-146 514.6
Blo04g00468 . 435 699 Sulfurtransferasese/Rhodanese AT1G16460 73.6 4.6e-113 404.4
Blo04g00810 . 34 307 Sulfurtransferasese/Rhodanese AT5G23060 61.2 1.6e-85 313.2
Blo16g00465 . 1 443 Sulfurtransferasese/Rhodanese AT4G01050 52.5 9.6e-120 427.6
Blo18g00643 . 9 613 Sulfurtransferasese/Rhodanese AT1G09280 63.2 2.1e-219 758.8
Blo13g00668 . 91 460 Sulfurtransferasese/Rhodanese AT2G40760 73.3 6.6e-155 544.3
Blo13g00095 . 87 432 Sulfurtransferasese/Rhodanese AT1G17850 65.4 1.9e-135 479.6
Blo12g00602 . 108 241 Sulfurtransferasese/Rhodanese AT2G42220 76.1 3.1e-57 218.8
Blo09g00271 . 40 221 Sulfurtransferasese/Rhodanese AT3G08920 61.0 1.4e-64 243.0
Blo15g00245 BCT 93 303 Sulfurtransferasese/Rhodanese AT4G24750 73.0 9.9e-93 337.0
Blo08g00130 . 401 616 Sulfurtransferasese/Rhodanese AT5G19370 65.1 2.6e-80 295.8
Blo10g00844 . 117 468 Sulfurtransferasese/Rhodanese AT5G55130 73.9 6.5e-155 543.9
Blo15g00078 . 28 190 Sulfurtransferasese/Rhodanese AT4G27700 81.0 1.2e-74 276.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014038 0 2 1 0 1 0 0 0 0 1 0 0 1 1 1 1 0 1 1 0 1 1 1 1 2 0 1 1 4 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00095 Blo_Chr13 FPKM 3.556263 5.368431 7.893646 9.302093 1.805556 2.022018 1.389456 15.540007 18.17765 14.36489