Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00102 ATGGTGATGAAAATTGAACTAGTGAAATCGAGAGGAGGGGTGAGCCACCGGAAGATGTTTAGAAAATTGAAAATGTGGAAATTGTTTTTGACTACGAGAAAACTATATTGGAGCTTCCCAGGGAGGAGACAAATTTCTGAGAGGGTTTGCAGGGAGATGCTCTCAGCTTTTTTGTTCAATATTTATGGGTTTTTTGTATTATTTTTTCACTCTGCCGGAGTTGGCCCCCAGCTTTTCTTCTGCTACGAGTGTAACCAAACGGTTTCCATTTCCCTATCCTCCTCCTCTGATCCCCTCTGCCCCAATTGCAACGGTGGCTTTATCGAAGAATTGGAAACCCCTGACCCTATTCCTAACCCCCTTCCCTTCCCTTTCTCCTTTAACACCGATTCCTTCCCGAATTTTGGCTCCGGAGGCCGTGGTTCTGATGATTTTCCTTTAGTCTTCTCTACTACTGCCTCCTCCGGCGGCGATGACACCGCTATAAACGATCTTTCTGAGCTCTTTGGTGCTGGTCCTACTCGTTTGCAGGATCCCGATGCCTTCAACCCAATGCTATTTCTTCAGAACTATCTTCAAAATGCTCATGTCCAATTAGTGATCCAGAATGTCTCAGGGGAGGTTATGAACCCCCATGCGAATCTAAATCTTGGAGACTACTTCTTTGGCCCTGGCCTTGAGCAATTAATTCAGCAACTGGCTGACAACGATCCCAACAGGTACGGGACACCTCCGGCATCAAAATCAGCCGTGGAGGCGCTTCCTGATGTTATTATTTCAAAAGAAATATTGACATCAGATTCATCACAGTGCGCTGTTTGTATGGATACGTTTGAGCTTGGCGAGGAGGTGAAACAGATGCCCTGCAAACATATATACCATTCAAATTGTATCCTGCCTTGGTTGGAATTGCATAATTCTTGCCCCGTATGTCGATATGAATTACCCACTGATGATCCTGATTACGAGCAAAAGATCCATGGGAATTCTACTCCTGCTACGGAAAGTGGAAGTCGAAATATTTCTATCGGTGGGAGCACTGCTGGTGGAACTTTGGGAAGTGAGGCAGCTTTGGGAGATAATTCTGAGTCACAACCTCAACTCGGAGATGATCGTTTGTTTAGGAGAATTTCTTTACCTTGGCCGTTCAGAGTATTTGGCTCTCCTGCTGAGACTAGTAATAGCGAGACTGGTAATAGCGAGACTGGAAACAATAATGAACCAAATTCGGCCAACAGGGAAAATCAAAACACTCAATCAGAGTCTGGGCAGGAAGACCGCGATTGA 1287 45.3 MVMKIELVKSRGGVSHRKMFRKLKMWKLFLTTRKLYWSFPGRRQISERVCREMLSAFLFNIYGFFVLFFHSAGVGPQLFFCYECNQTVSISLSSSSDPLCPNCNGGFIEELETPDPIPNPLPFPFSFNTDSFPNFGSGGRGSDDFPLVFSTTASSGGDDTAINDLSELFGAGPTRLQDPDAFNPMLFLQNYLQNAHVQLVIQNVSGEVMNPHANLNLGDYFFGPGLEQLIQQLADNDPNRYGTPPASKSAVEALPDVIISKEILTSDSSQCAVCMDTFELGEEVKQMPCKHIYHSNCILPWLELHNSCPVCRYELPTDDPDYEQKIHGNSTPATESGSRNISIGGSTAGGTLGSEAALGDNSESQPQLGDDRLFRRISLPWPFRVFGSPAETSNSETGNSETGNNNEPNSANRENQNTQSESGQEDRD 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1820125 1821890 + BLOR05383 Blo13g00102 68497

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00102 428 Pfam Ring finger domain 270 312 IPR001841 -
Blo13g00102 428 SUPERFAMILY RING/U-box 255 319 - -
Blo13g00102 428 MobiDBLite consensus disorder prediction 322 368 - -
Blo13g00102 428 MobiDBLite consensus disorder prediction 327 349 - -
Blo13g00102 428 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 69 390 - -
Blo13g00102 428 SMART ring_2 271 311 IPR001841 -
Blo13g00102 428 MobiDBLite consensus disorder prediction 385 428 - -
Blo13g00102 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 233 318 IPR013083 -
Blo13g00102 428 CDD RING-H2_RNF126_like 270 312 - -
Blo13g00102 428 MobiDBLite consensus disorder prediction 388 419 - -
Blo13g00102 428 ProSiteProfiles Zinc finger RING-type profile. 271 312 IPR001841 -
Blo13g00102 428 Pfam zinc-ribbon 77 111 IPR039525 GO:0061630
Blo13g00102 428 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 69 390 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00102 K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] - csv:101205252 418.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo09g00314 Blo-Chr9:13310484 Blo13g00102 Blo-Chr13:1820125 1.39E-32 dispersed
Blo13g00102 Blo-Chr13:1820125 Blo15g00039 Blo-Chr15:335308 0 dispersed
Blo18g00251 Blo-Chr18:2648051 Blo13g00102 Blo-Chr13:1820125 2.01E-22 dispersed
Blo18g00610 Blo-Chr18:9798525 Blo13g00102 Blo-Chr13:1820125 1.47E-11 dispersed
Blo13g00101 Blo-Chr13:1815980 Blo13g00102 Blo-Chr13:1820125 1.52E-141 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g964 . . . . Bpe12g00632 . . Bma12g01260 Cmo13g00999 . . . . . . Cpe20g00175 . . . . . . . . . . . . . . . . . . . . Csa01g00747 Chy12g01365 Cme12g01797 Blo13g00102 . . . Bpe07g01067 . . . . . . Cma13g00964 . . Car18g00086 Cpe09g01094 . Bhi08g01341 Tan05g2147 . Lac10g0321 . . . Cla01g01465 Cam01g1533 Cec01g1573 Cco01g1620 Clacu01g1557 Cmu01g1447 Cre01g1369 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004117 1 3 3 1 3 1 1 1 1 1 1 1 1 1 1 1 1 4 2 1 1 1 1 1 1 0 1 5 3 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00102 Blo_Chr13 FPKM 9.319445 10.072632 14.258411 9.48484 12.209937 11.214027 12.643363 19.164434 17.102354 17.611971