Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00115 ATGCTTCTTGAAGAAGAAAAAGAGGTGAGAGAATTTAGAGAGAGAAAATGGAGTACGGCGGTGGAGGCGCTGGCTCCGGCGGAGAAAACGATTCATTTTCCGACCAACAGAAGAGGAAGAAACGCTACCACCGTCACACTGCTCATCAGATTCAGAAGCTCGAAGCGTAAAACTTCCTCTCTTCATTTCTCAAATGAATTTTTATGGGGTTTTTTCCTTGCTTTTCTCAATCCGACTTCTCTCTCTCTTAGAATGTTCACCGAGTGTCCTCACCCAGATGAAAAACAGAGATTGCAGCTGAGCAGAGAACTGGGTTTGGCTCCTCGTCAAATCAAATTCTGGTTCCAAAACAGAAGAACCCAGATGAAGGCCCAACACGAGAGAGCAGACAACTGTGCTCTTCGCGCAGAGAACGACAAGATCAGATGTGAAAACATTGCAATCAGAGAAGCGCTCAAAAATGTGATTTGTCCATCTTGTGGTGGACCTCCCAATACCGAAGATTCCTATTTCGACGAGCAGAAACTTCGTATGGAAAATTCCCAGTTGAAACAAGAGCTTGACAGAGTATCCAGTATTGCAGCCAAATACATAGGCAGGCCAATTTCCCAACTCCCTTCTGTTCATCCTATTCACATTTCTTCTCTTGAGCTATCAATGGGTAATTTTGGAGTTCCTCCCCCTTCTCTGGATCTTGATCTTCTTCCAGGAATCTCACCCACAGGCCAATCTTTACCATTTCAATCGATGGGTTTATCAGAAATGGACAAGTCCCAAATGACTGATATGGCTGCAAATTCAATGGAAGAACTAATCAGGCTTCTACAATCAAACGAACCATTGTGGATGAAATCCTCCACAAATGGCAAAGACATTCTTAATCTTGAAAATTACAGCCGGGTTTTTCCAAAGCCGAACGCTCATTTGAAAAATCCCCGTCTTCGAGTTGAGGCGTCAAGAGATTCTGGTGTTGTCGTGATAAATGCTTTGACATTGATCGACATGCTTATCGACCCTAACAAGTTAATTGAGCTATTTCCCAGCATTATTTCATCTGCTAGAACGATTGAAGTGATATCCACCGGAATGTTGGGTAGCCATAGTGGAACTCTACTTCTGATCCATCAAGAATTACAAGTGCTTTCTCCATTAGTGCCTACTCGAGAATTCTACTGCCTGAAATATTGCCGGCAAATTGAGCAGGGGCTGTGGGCAATATGCGACGTTTCGTACGAATTCCCAGGGGAAAACCAATTTGCTTCTTCCCAGTTTCGGTCTCGTCGGCTTCCATCCGGCTGCCTCATTCAAGACATGCCTAATGGTTATTCTAAGGTTATTTGGGTTGAACATGTGGAGATTGAAGATGAAACCCCTCCTCATCGGCTCTATCGAGACCTATTTTATAGTGGCTCGGCATTTGGTGCCGAACGATGGGTTGCCACTCTTCAAAGAATGTGCGAAAGATATGCTTCTCTGATGGTCTCTGCCAATTCGACCTGCGACCTTGAAGGAGTTCCTTCGCCGGAGGGGAAGAGGAGCCTGATGAAACTAACCCAGCGAATGGTCAACGTCTTTTACGCAAGTATCGGTACATCATACGGTCACCGATGGACGACGCTTTCAGGACAGAACGAGGTTGGAGTTCAAGTCACCGTCCATAAAAGCACCGATCCTAGTCAACCAAATGGTGTGGTTCTTAGTGCTGCCACTACAGTTTGGCTCCCCATTTCGCCTCAAAATGTCTTCAATTTTTTCAAAGACGATAGGACTCGATCCCAGTTTGTGCTGATCGTCATAATTTGGGATGTTCTTTCTGATGGTAATTTGATCCAAGAGATTGCTCATATATCAACCGGATCACATCCTGGAAACTGCATATCCATTCTTCGAGCCTTCAACACCAGCCAAAACAACATGTTGATTCTCCAAGAAAGCTGCACAGATTCATCCGGGTCATTGGTAGTCTACTGCCCGGTCGATCTTCCAGCCATTAACATTGCGATGAGCGGAGAAGATCCTTCGTATATTCCATTGCTGCCATCTGGGTTTGTTATTTCGCCTGACGGTCGAGCTGAACAAATGGACACGGGTCCGTCGACCAGCTCCGGCCAACCACCCGGATCGCTAATTACAGTAGCATTTCAGATACTGATGAGCAGCCTGCCATCAGGTAAGCTTAACTTAGAGACAACCGATGCAAAGCAACGATACGAAGTTGATGCTAAACACCGTTCAATTATTGTTTATAGAATAGTAGACTTTGAGTCATTGGTTGAGTTGGAAATTGAAGAATTATTTGAGGAGATTGGTTTAGGCGGTTTGTGTCGAATGGGTGGAAGTTACTTTGTACGGCCTCCACTCCTCTCATTGGCTCAGCCTCCAGCCCCCTTGGAGGAACAGCCTCTAGCATCGCCTCTGCAGCACATGGAGGATGATGAGCCCCAGCCGATGACTTTGCCCTCTCCTCAGACATCTCATTTTACTTCGATGATTAAGGAGATGTCTGGCTGGATGAGCATGATGGAGGACCGACTTATCTGGATGGAGGAGCTCCATCAAATGGGGCTGCTCTAA 2574 45.69 MLLEEEKEVREFRERKWSTAVEALAPAEKTIHFPTNRRGRNATTVTLLIRFRSSKRKTSSLHFSNEFLWGFFLAFLNPTSLSLRMFTECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRAENDKIRCENIAIREALKNVICPSCGGPPNTEDSYFDEQKLRMENSQLKQELDRVSSIAAKYIGRPISQLPSVHPIHISSLELSMGNFGVPPPSLDLDLLPGISPTGQSLPFQSMGLSEMDKSQMTDMAANSMEELIRLLQSNEPLWMKSSTNGKDILNLENYSRVFPKPNAHLKNPRLRVEASRDSGVVVINALTLIDMLIDPNKLIELFPSIISSARTIEVISTGMLGSHSGTLLLIHQELQVLSPLVPTREFYCLKYCRQIEQGLWAICDVSYEFPGENQFASSQFRSRRLPSGCLIQDMPNGYSKVIWVEHVEIEDETPPHRLYRDLFYSGSAFGAERWVATLQRMCERYASLMVSANSTCDLEGVPSPEGKRSLMKLTQRMVNVFYASIGTSYGHRWTTLSGQNEVGVQVTVHKSTDPSQPNGVVLSAATTVWLPISPQNVFNFFKDDRTRSQFVLIVIIWDVLSDGNLIQEIAHISTGSHPGNCISILRAFNTSQNNMLILQESCTDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFVISPDGRAEQMDTGPSTSSGQPPGSLITVAFQILMSSLPSGKLNLETTDAKQRYEVDAKHRSIIVYRIVDFESLVELEIEELFEEIGLGGLCRMGGSYFVRPPLLSLAQPPAPLEEQPLASPLQHMEDDEPQPMTLPSPQTSHFTSMIKEMSGWMSMMEDRLIWMEELHQMGLL 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2231621 2239095 - BLOR05396 Blo13g00115 68510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00115 857 Pfam START domain 265 488 IPR002913 GO:0008289
Blo13g00115 857 SUPERFAMILY Bet v1-like 254 490 - -
Blo13g00115 857 CDD START_ArGLABRA2_like 257 487 - -
Blo13g00115 857 Pfam Homeodomain 84 123 IPR001356 GO:0003677
Blo13g00115 857 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 85 725 - -
Blo13g00115 857 SMART HOX_1 77 129 IPR001356 GO:0003677
Blo13g00115 857 SMART START_1 262 488 IPR002913 GO:0008289
Blo13g00115 857 ProSitePatterns 'Homeobox' domain signature. 100 123 IPR017970 GO:0000981|GO:0006355
Blo13g00115 857 CDD homeodomain 84 126 IPR001356 GO:0003677
Blo13g00115 857 ProSiteProfiles 'Homeobox' domain profile. 84 125 IPR001356 GO:0003677
Blo13g00115 857 Gene3D - 49 139 - -
Blo13g00115 857 Gene3D - 260 467 IPR023393 -
Blo13g00115 857 SUPERFAMILY Homeodomain-like 84 128 IPR009057 -
Blo13g00115 857 ProSiteProfiles START domain profile. 253 491 IPR002913 GO:0008289
Blo13g00115 857 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 85 725 IPR042160 -
Blo13g00115 857 Coils Coil 173 193 - -
Blo13g00115 857 SUPERFAMILY Bet v1-like 508 727 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00115 Blo-Chr13:2231621 Blo15g00501 Blo-Chr15:8462599 0 dispersed
Blo13g00115 Blo-Chr13:2231621 Blo15g00036 Blo-Chr15:291196 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13115 PF01852 START 4.30E-43 CL0209 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00115 K09338 - fve:101292999 1005.74