Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00117 ATGGGCCATGGGGGCGCGACGCACGCGCAAGCCGACAGAGGGTCAGATGGGACGAAGCCAGGAGGCGCTAAACCTTCTAGGGTGCGCAATTCAAAAATACAGGGTGGCCAAGCAGGATCTGCACACTCAGCACCGCGGAGGTCAGTAGAGTCCGAGGAAAAAAAGATGAGATTTGTGGGAGAGTTCACGAGGGACCAGATGCTACACAAATTCACACCTCAATTTTGGAAGGAAGTGGGTTCGAAAAGACTGCACAAGGAGCTCCTTCAAAGTCATGGACTGATGATCGCCAGGGTGGAGTCAACAGGAGAAAGATTTCACCTTTCCAAGCAGCTAGCCTTATATCCTACATCATCTATCTTGTGGGAAAATAGAGACAAAGCTATTTGGAAGAAAAAATTAAGCCAAATAAGAGTTGGGATGATAGCCTACCAGATTTGTTTTGTAGCGATACTCATGGAGGCAGCAGCGTCGGCCAGTGCAGTTGTTCGATCTCCCTTTGGATACTCCAGACGATCTGATTTTGTTTGTAGATCGGTATCTTTGGCAGCCAATGGACTTAATTTTGTATCATTTGGGAACAAACTACGATTCTCTATTCATCATTGTAATTCATTTTCTCCATCAAAACTATGGAGTAGAAGAATTGGTTTTGGTAGTGGGAGAAACCCCTCCATTAAAGCGTCATTGTCTCCAGGATCAGCTTCGTCAATTGCTCCACTTCGGCTGGAGTCTCCAATCGGGCAGTTTTTATCTCAGATTTTGGTGAGTCACCCACATCTTGTCCCTGCTGCAGTTGAGCAGCAGCTTGAGCAACTCCAAACTGACCGTGATGCTGAGGAAAAGAAAGAAGACCTGCCTGCAACTGGTACCGATCTAGTTTTGCATAGGTTGAGAATTGCTGAGATCAAGGCAAGTGAGAGAAAGAAGGCTTTGGAAGAGATCTTATATGCATTGGTTGTACAGAAATTCATGGATGCTAATGTTTCTTTAGTACCTGCCATATCACCATCACCTTCGGACTCCTCAGGCCGTGTTGATTCATGGCCAAGTCAAGATGAGAAGCTGGAACAGCTTCACACTCCTGAAGCATATGAAATGATTCAAAACCACCTTGCTTTGATTTTAGGGAAACAGTTAGGCGAATCAAGCTCCGTGGCAAAGATAAGTAAACTTCGCGTTGGGCAGGTATATGCAGCTTCTGTGATGTATGGATACTTCCTCAAGCGGGTTGACCAGCGGTTTCAGCTAGAGAAGTCAATGAAAATTCTTCCAGGTGCTTCAAACGAAGAGGAGAGTGATATTCAGCAAGCTCTAATTGACAACACAAGACCCAATTTTTGGCAGTCCTCATTTCCAACTCAACCTGCCAATCCTGAAGTCTCTTCTGGGTCTGGTGGGATGAAATCCTCTCGATTACGAACCTATGTTCTGTCGTTTGATGTGGATACGCTTCAAAGATATGCAATGATAAGATCCAAAGAAGCCGTTACCATAATCGAAAAGCATACGGAGGCATTGTTTGGAAGGCCTGAGGTGGTCATAACTCCTGAAGGAACTGTTGATTCTTCTAAAGAGGACCTCATTAAGATTAGCTTCAGTGGATTGAAGCGGCTGGTTTTGGAAGCTGTTACATTCGGTTCATTTCTGTGGGATGTGGAGAGCTACGTGGATTCCAGGTATCATTTTGTCATGAGCTAA 1701 45.21 MGHGGATHAQADRGSDGTKPGGAKPSRVRNSKIQGGQAGSAHSAPRRSVESEEKKMRFVGEFTRDQMLHKFTPQFWKEVGSKRLHKELLQSHGLMIARVESTGERFHLSKQLALYPTSSILWENRDKAIWKKKLSQIRVGMIAYQICFVAILMEAAASASAVVRSPFGYSRRSDFVCRSVSLAANGLNFVSFGNKLRFSIHHCNSFSPSKLWSRRIGFGSGRNPSIKASLSPGSASSIAPLRLESPIGQFLSQILVSHPHLVPAAVEQQLEQLQTDRDAEEKKEDLPATGTDLVLHRLRIAEIKASERKKALEEILYALVVQKFMDANVSLVPAISPSPSDSSGRVDSWPSQDEKLEQLHTPEAYEMIQNHLALILGKQLGESSSVAKISKLRVGQVYAASVMYGYFLKRVDQRFQLEKSMKILPGASNEEESDIQQALIDNTRPNFWQSSFPTQPANPEVSSGSGGMKSSRLRTYVLSFDVDTLQRYAMIRSKEAVTIIEKHTEALFGRPEVVITPEGTVDSSKEDLIKISFSGLKRLVLEAVTFGSFLWDVESYVDSRYHFVMS 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2350847 2360691 - BLOR05398 Blo13g00117 68512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00117 566 Pfam Protein of unknown function (DUF760) 312 421 IPR008479 -
Blo13g00117 566 PANTHER EXPRESSED PROTEIN 153 565 - -
Blo13g00117 566 PANTHER EXPRESSED PROTEIN 153 565 IPR038925 -
Blo13g00117 566 MobiDBLite consensus disorder prediction 1 53 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00117 - - - qsu:111999852 548.895
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00382 Blo-Chr6:22399722 Blo13g00117 Blo-Chr13:2350847 2.12E-50 dispersed
Blo13g00117 Blo-Chr13:2350847 Blo19g00257 Blo-Chr19:14861944 2.35E-105 dispersed
Blo13g00117 Blo-Chr13:2350847 Blo11g00588 Blo-Chr11:5757300 7.93E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g925 . . . . . . . . Cmo13g01210 . . . . . . Cpe20g00053 . . . . . . . . . . . . . . . . . . . Lsi02g00012 . . . Blo13g00117 . . . Bpe07g01083 . . . . . . . . Car13g00982 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002957 1 3 1 0 1 2 3 2 2 1 2 2 3 1 1 2 2 1 3 2 1 2 2 1 1 2 2 3 3 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00117 Blo_Chr13 FPKM 6.484826 6.927113 21.33873 22.040188 16.692791 12.911759 16.031548 3.709387 3.692451 4.073108