Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00122 ATGATACCCAGTAGCTCTTGCCCTTCTCTACCTTCTTGTGAACCATTTTCGTGCTTAGAAAATGGAACGAGTAACAAGAGGAAACGACGACCCGCCGGAACACCAGATCCAGATGCAGATGTAGTATCTCTTTCGCCCAAAACATTGCTGGAGTCGGATCGATATGTGTGTGAGATCTGCAACCAAGGATTTCAGAGAGATCAGAATCTGCAAATGCATCGTCGGAGACACAAAGTGCCGTGGAAACTGTTGAAGAGGGAGTCGCCGGCGGTGAGGAAGAGAGTGTTTGTTTGTCCGGAGCCGAGCTGTTTGCACCACGACCCATGCCACGCCCTCGGAGATCTCGTTGGAATAAAGAAGCATTTCCGGCGAAAGCACAGTAATCACAAGCAATGGGTCTGTGAAAAATGTTCGAAAGGATATGCAGTTCAATCAGATTACAAAGCTCATCTCAAAACCTGTGGAACAAGAGGCCATTCTTGCGACTGTGGCCGAGTTTTCTCAAGGGTGGAAAGTTTCATAGAACATCAAGATGCTTGCAACATGGGTCGATTTCTGCCGGAATTACATACTCCTCAGCCGGCATGCTTATCTCGGACAGCTTCGAGTCTCAGCCCAACGAGCGATACCAACTTTGCAAATGCTCAAATTTGGCCATCAATGGCTACTCAAAAGAGAAAAGACGCCATTTTCTTCCCCAACTCAAAAGAAAACAACCCCCAAGAAAATGTCCACACTTACTATCACAATCTTGATCTTCAGCTCTCTACCAATTCATCAAATCCAACAGATATTCATTCCGTTTTTCCAAAGAAAGACGATAAGCAATCGAACCTTTTGCAGCTCTCGATTGCTTCGTCTGATTTCATCAAGAAAATCGAATCGAATTCAGTGAAGGACGAGAAATCTAGGTTTGTTTCAGTTTCGAGGAATATCAAAGAAGAAGAACATCTGAGAATAGCCATGGCGGAAAAAGCTTGTGCGGAAGAAGCGAGAAAACAAGCGAAGAGACAAATTGAATTAGCAGAAGAAGAATTTGCAAATGCGAAGAGAGTTAGACAGCAGGCCCAGAATGAGCTAGAAAAAGCTCAAGCTTTTAAAGAACATGCAATCAAAAAGATGAACTCCACAGTTCTGCAAATCACGTGCCAAGCTTGTCAAAGAAGATTTCAAGCAAGAAAAACTGTTTTACCATCTCCAGAAAATGAAAATTCACTGGCTTTGAGTTATATTTCATCAGTAATCACAACAGAAGCCGATCAAGTAGAAAAACACAATCGACTTAATCCATGA 1293 43.23 MIPSSSCPSLPSCEPFSCLENGTSNKRKRRPAGTPDPDADVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESPAVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRFLPELHTPQPACLSRTASSLSPTSDTNFANAQIWPSMATQKRKDAIFFPNSKENNPQENVHTYYHNLDLQLSTNSSNPTDIHSVFPKKDDKQSNLLQLSIASSDFIKKIESNSVKDEKSRFVSVSRNIKEEEHLRIAMAEKACAEEARKQAKRQIELAEEEFANAKRVRQQAQNELEKAQAFKEHAIKKMNSTVLQITCQACQRRFQARKTVLPSPENENSLALSYISSVITTEADQVEKHNRLNP 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2984275 2986537 + BLOR05403 Blo13g00122 68517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00122 430 Pfam Zinc finger, C2H2 type 55 77 IPR013087 -
Blo13g00122 430 Gene3D Classic Zinc Finger 32 97 - -
Blo13g00122 430 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 10 418 - -
Blo13g00122 430 Coils Coil 318 373 - -
Blo13g00122 430 MobiDBLite consensus disorder prediction 1 42 - -
Blo13g00122 430 SUPERFAMILY beta-beta-alpha zinc fingers 54 152 IPR036236 -
Blo13g00122 430 Gene3D Classic Zinc Finger 117 188 - -
Blo13g00122 430 MobiDBLite consensus disorder prediction 1 22 - -
Blo13g00122 430 SMART c2h2final6 132 159 IPR013087 -
Blo13g00122 430 SMART c2h2final6 55 77 IPR013087 -
Blo13g00122 430 SMART c2h2final6 96 126 IPR013087 -
Blo13g00122 430 PANTHER OS03G0310200 PROTEIN 10 418 IPR039288 GO:0009630
Blo13g00122 430 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 77 IPR013087 -
Blo13g00122 430 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo13g00122 Blo15g00028 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00122 Blo-Chr13:2984275 Blo06g00128 Blo-Chr6:5176019 1.31E-74 dispersed
Blo01g00789 Blo-Chr1:11529792 Blo13g00122 Blo-Chr13:2984275 5.50E-172 transposed
Blo15g00029 Blo-Chr15:235530 Blo13g00122 Blo-Chr13:2984275 1.25E-124 transposed
Blo15g00207 Blo-Chr15:2133134 Blo13g00122 Blo-Chr13:2984275 1.22E-17 transposed
Blo13g00122 Blo-Chr13:2984275 Blo15g00028 Blo-Chr15:234270 1.60E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13116 PF00096 zf-C2H2 0.004 CL0361 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00122 K25871 - tcc:18589540 592.423