Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00126 ATGCTGTGCGGCGGGTTGCGGAGCTCGAGGTTGGCTTGTGGAACTCGGGTTCGTGAAACAGAACCCGTAGGACAAATTGAATCTCCCGCGAAGCTGAGAATTCTAGTGCCAAGCCGAGGGGCAAAGTCTTGGAAGGACTTCGTGGGAGCGGCTGGCGTCGAGTTAGCATTGGACCGGTCCCGCTGGTCACGGGCTCAGAGACTCAGAGAAGCAAAAACAAAAGGGAAGCACTCCGGCGACGGAAAACGGAAGGGAACTAAAGAGGCGAGGTCGCCCTCGAAGCTGTTGTGGATGAGAAGAAGTAGGGTGCTGAGAAGATTACTGCACAAGTATAGAGAGACGGAGAAGATGGACAGGCACATTCATCATGAACTCTACTTGAAAGTAAAGGGTAATGTTTTCAAGAATAAAAGACTGCTGATGGAGAGCATTCACAAGGTTACGGTTGAAAAGACAAGAGAAAGAGTGCTTTCTGATCAGCTTGAGGCTAAGAGAGCTAGAGGAATTAAGAAGTTAAGATCTATTATGAATTCAAGGTTTAATACCCCTTTTGGCTGGATGGAAGTTCAGTTTTGGAAAAATAGAAAGAAGACTTGTGTTTTTGAAAGAGAAGCTCCGCACGGCCTCCCTCCTCTCGGCCTTCCTCTCTTCAAAGCCGAACTTGCTGATCTTGTAGCATTTCTTGAGCAAGTTGGAAGGGTTACTATCTCTTCCAAGCATCACTCTAGTGGCGTAACTATAGTGTGGAGCATTGCTGGTTCAGAAAATTACAGTTTTCAGAACAGATTTCTATTTTGTGCTCTTAATCATTCTTGGATCTTATCAGGTGATCATTATGATTCTGGTGACATGCAAGCTAAGGATAAGGCATTGCAGGACGATCCCTTGGATTATCAGCCGGGTTCAACCTGA 912 46.38 MLCGGLRSSRLACGTRVRETEPVGQIESPAKLRILVPSRGAKSWKDFVGAAGVELALDRSRWSRAQRLREAKTKGKHSGDGKRKGTKEARSPSKLLWMRRSRVLRRLLHKYRETEKMDRHIHHELYLKVKGNVFKNKRLLMESIHKVTVEKTRERVLSDQLEAKRARGIKKLRSIMNSRFNTPFGWMEVQFWKNRKKTCVFEREAPHGLPPLGLPLFKAELADLVAFLEQVGRVTISSKHHSSGVTIVWSIAGSENYSFQNRFLFCALNHSWILSGDHYDSGDMQAKDKALQDDPLDYQPGST 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3605281 3619962 - BLOR05407 Blo13g00126 68521

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00126 303 MobiDBLite consensus disorder prediction 66 92 - -
Blo13g00126 303 SMART Ribosomal_L19e_2 5 148 IPR000196 GO:0003735|GO:0005840|GO:0006412
Blo13g00126 303 PANTHER 60S RIBOSOMAL PROTEIN L19 63 169 IPR039547 GO:0003723|GO:0003735|GO:0022625
Blo13g00126 303 PANTHER 60S RIBOSOMAL PROTEIN L19-2 63 169 - -
Blo13g00126 303 Pfam Ribosomal protein L19e 63 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Blo13g00126 303 Gene3D - 60 183 - -
Blo13g00126 303 SUPERFAMILY Ribosomal protein L19 (L19e) 63 146 IPR035970 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00126 K02885 RP-L19e, RPL19; large subunit ribosomal protein L19e - gmx:100818880 164.081
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00275 Blo-Chr5:2996584 Blo13g00126 Blo-Chr13:3605281 6.67E-37 dispersed
Blo06g00521 Blo-Chr6:27366315 Blo13g00126 Blo-Chr13:3605281 3.46E-37 dispersed
Blo08g00563 Blo-Chr8:18865585 Blo13g00126 Blo-Chr13:3605281 6.04E-07 dispersed
Blo13g00126 Blo-Chr13:3605281 Blo17g00496 Blo-Chr17:7370267 1.93E-39 dispersed
Blo13g00126 Blo-Chr13:3605281 Blo10g00072 Blo-Chr10:700257 1.94E-37 transposed
Blo13g00126 Blo-Chr13:3605281 Blo07g00578 Blo-Chr7:16705956 5.18E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g181 . . . . Bpe12g00652 . . . . . Cma10g00333 . Car10g00315 . Sed08g0409 . . Bhi02g00153 Tan09g1808 Cmetu02g0610 . Hepe09g0399 . . Cla06g01413 Cam06g1566 Cec06g1626 Cco06g1618 Clacu06g1528 Cmu06g1482 Cre06g2291 . . . . . . . . Blo13g00126 . . . . . . . . Cmo10g00359 . . . . . . . . . . . . . . . . . . . . . Lsi06g01273 Csa01g00443 Chy02g02303 Cme02g01674
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000470 0 0 76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00126 Blo_Chr13 FPKM 6.070086 5.237576 6.10548 5.128545 7.479522 6.833764 9.63821 15.980819 15.850086 15.84921