Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00138 ATGGACTTCCATCTCCATTTCCTGAGAACCGAGCTTTCAAGACTTTATCATTCTCTCTCGAGAACGCAACTCTTACACGCTTTAATCATAAAGATCCATCTCGCTCCAGACCCATTTTATGCAACTAGACTCGTCAGATTTTACGCCTTAACTGGTAATCTTCGCTCTGCTCGCAAGTTGTTCAATACTACTTCCATTCGAACCGTTTACCTATGGAATTCCATCATTCGAGCTCATGCTCAATGCTACGAATATGACGAGGCGTTGTCTCTCTTCTCAAAAATGCTTAACACTGAGATAAGAGCAGATAACTTCACTTACGCTTGTGTAATTCGTGTATGTTCTGAAAATTTTGATGTAGAAAGACTCAAACTCGTACATAAACATGCAATGGTTTGTGGGTTAGCGTTTGATTCTATTTGTTGCAGTGCTCTTGTGTCTGCTTACTCGAAATCTGGCCTTCTCGATGAGGCGTGCAAGGTGTTTGATAAAATGTCCCACCCAGATTTGGTAATGTGGAATTCCATTATTTCGGGTTTTGGGTATTTCGGTTTTTGGGAGAAAGGGCTCCATTTTTTCTCAAGGATGAGACAATTAGGAAAGAAAGCAGATGGATATACGATAGTTGGTTTAGCATCGTGCTTATCTGATTCAAACTTGGTGAAAGTCGGCCAAGGAATTCACTCATTTTGTTTGAAAAGTAATCTCGATTCTGACCAACATGTCGGTAGCGTACTTGTGAGCATGTACTCTCGATTTAATCGCATGGATTCTGCTCATTTAGTTTTTCGTGATATGCTGGAGCCTGATCTGATCACCTGGTCGGCTTTGATAGCCGGATATTCTCAATATGGAGATCACGAGAAAGCGATCTTCTTGTTTAAGAAACTAATGGCAGATAAGAAAGCAGATTCCATATTGATAGCCACCATTTTAGCTGCTGCTTCACAATTATCAAACATAAGATATGGTGTTGAAATCCACAACTATGTTTTTAGACACGGAATTGAATTTGATATTAAGGTCTCGTCTTCTCTCCTTGACATGTATTTCAAGTGCGGGTATGTGAGCTCTGGACTTGCTGTCTTCGGCATTATGCAAGACAAGAATATCGTTTGTTACAATACCGTGATTTGGGGTCTTGGTCTTCACGGATTTTCCTCCCACGCATTTGAAGTTTTTGAGGAATTGCAAAAACAAGAGTTAGTACCTGATAGATCAACATTCTGTGCTCTCCTCTCTACATGTTGCCATTCTGGTCTTGTGACAGAAGGCAGGGAGATTTTCAGGGGAATGGAAAGCAACTTCTGCATTCAACCCGAGGTTGAACACTATGTTTACATAGTGAAGCTTCTAGGAATGGCAGGAGAATTGGAAGAGGCTTTTAACCTTATCCTTTCGTTGCCACAGCCTGTGGACTGTGGGATCTGGGGTGCCCTCTTGTCTTGCTGTGAAGCCAGTGGTAATCGTGAGCTTGCAGAAACTGTCTATAAGAAACTTTCATCCACTAGTCCCGAAAAGAGCGCGAACAAGGTAATGCTCTCTAATGCATACGCTGGAGACGGACGGTGGGAGGATGCTAGGAAATTAAGGGATGATATGATAGAAGGAAAGCAGAGGAAATGGCCAGGAGTAAGCTGGATTGCAGAAAGTTGTTAG 1659 42.01 MDFHLHFLRTELSRLYHSLSRTQLLHALIIKIHLAPDPFYATRLVRFYALTGNLRSARKLFNTTSIRTVYLWNSIIRAHAQCYEYDEALSLFSKMLNTEIRADNFTYACVIRVCSENFDVERLKLVHKHAMVCGLAFDSICCSALVSAYSKSGLLDEACKVFDKMSHPDLVMWNSIISGFGYFGFWEKGLHFFSRMRQLGKKADGYTIVGLASCLSDSNLVKVGQGIHSFCLKSNLDSDQHVGSVLVSMYSRFNRMDSAHLVFRDMLEPDLITWSALIAGYSQYGDHEKAIFLFKKLMADKKADSILIATILAAASQLSNIRYGVEIHNYVFRHGIEFDIKVSSSLLDMYFKCGYVSSGLAVFGIMQDKNIVCYNTVIWGLGLHGFSSHAFEVFEELQKQELVPDRSTFCALLSTCCHSGLVTEGREIFRGMESNFCIQPEVEHYVYIVKLLGMAGELEEAFNLILSLPQPVDCGIWGALLSCCEASGNRELAETVYKKLSSTSPEKSANKVMLSNAYAGDGRWEDARKLRDDMIEGKQRKWPGVSWIAESC 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4389605 4391263 + BLOR05419 Blo13g00138 68533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00138 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Blo13g00138 552 TIGRFAM PPR: pentatricopeptide repeat domain 372 405 IPR002885 -
Blo13g00138 552 TIGRFAM PPR: pentatricopeptide repeat domain 70 103 IPR002885 -
Blo13g00138 552 TIGRFAM PPR: pentatricopeptide repeat domain 140 166 IPR002885 -
Blo13g00138 552 TIGRFAM PPR: pentatricopeptide repeat domain 272 300 IPR002885 -
Blo13g00138 552 TIGRFAM PPR: pentatricopeptide repeat domain 171 202 IPR002885 -
Blo13g00138 552 TIGRFAM PPR: pentatricopeptide repeat domain 408 437 IPR002885 -
Blo13g00138 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 305 IPR002885 -
Blo13g00138 552 Pfam PPR repeat family 369 418 IPR002885 -
Blo13g00138 552 Pfam PPR repeat family 68 114 IPR002885 -
Blo13g00138 552 Gene3D Tetratricopeptide repeat domain 383 551 IPR011990 GO:0005515
Blo13g00138 552 PANTHER OS01G0545900 PROTEIN 6 548 - -
Blo13g00138 552 Gene3D Tetratricopeptide repeat domain 124 228 IPR011990 GO:0005515
Blo13g00138 552 Gene3D Tetratricopeptide repeat domain 4 123 IPR011990 GO:0005515
Blo13g00138 552 Gene3D Tetratricopeptide repeat domain 229 322 IPR011990 GO:0005515
Blo13g00138 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Blo13g00138 552 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 548 - -
Blo13g00138 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Blo13g00138 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 172 IPR002885 -
Blo13g00138 552 Pfam E motif 489 548 IPR046848 -
Blo13g00138 552 Pfam PPR repeat 272 298 IPR002885 -
Blo13g00138 552 Pfam PPR repeat 171 200 IPR002885 -
Blo13g00138 552 Pfam PPR repeat 141 165 IPR002885 -
Blo13g00138 552 Pfam PPR repeat 245 268 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00138 - - - jre:108981450 688.723
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00138 Blo-Chr13:4389605 Blo01g00570 Blo-Chr1:6271617 1.59E-97 dispersed
Blo13g00138 Blo-Chr13:4389605 Blo11g00249 Blo-Chr11:1997357 7.95E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g803 . . . . . . . . . . Cma10g00102 . Car10g00091 . . . . Bhi02g00502 . . . Hepe09g0226 . . . . . . . . . . . Cone13ag0161 . . . . . Blo13g00138 . . . . . . . . Cmo10g00106 . . . . . . . . . . . . . . . . . . . . . . Csa01g00120 Chy02g02607 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014459 0 1 1 0 0 1 1 0 0 1 1 1 0 0 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00138 Blo_Chr13 FPKM 53.732735 54.370556 76.992218 77.834854 152.016342 166.456131 153.129608 163.197998 159.093735 150.172852