Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00156 GTGTCGGTTACCTCAACAGGAACTAACGTGGCATCAGCGTATGGTTTCCGCTACTGTACGCCCCCTTTGAAGCACTTCTTATTCTTCACCTCTTCCTCTGTCCTCCATATTCGTCGTCCATTTTCTCTTATCGCTTCTGTTCACTCAGTCAGACCCACCTCCGCACCCTCATCTACGGAAACTTTCTTCTTCTCTTCACCTCGAGTTCCTATCTCCAATTTCCTCACGGGTAACTGTCCCCTCTTAAGAATGGAGAGATTCTGGAGTGGAAGTAATATCAGTAAGAACAAAGCAATGGTGGAAAATTTGTTTAACTATGGAGTGCTTAAATCGAAAAAAGTGGCTGAAGTAATGGAGAGTGTAGACAGGGCTTTGTTTGTATCAGGAGGTAATCCACCTTACATCGACAGCCCCATGCCTATTGGTTATAATGCCACTATTTCTGCGCCTCATATGCATGCAACTTGCCTTCAGCTGTTGGAGCAGAATCTGCAGCCTGGGATGCATGCTTTGGATGTTGGCTCAGGGACAGGATACTTGACTGCATGTTTTGCTCTGATGGTTGGACCCGAAGGTCGTGCCGTTGGAGTGGAACATATTCCTGAGTTGGTGTCTTCATCCATCTTAAATATTCAAAAAAGTGCAGCCTCTCTTTTGTTGAAAGAGGGTTCTCTTGTTGTCCATGTCGGAGATGGAAGGCAAGGGTGGCCAGAATTTGCACCCTATGATGCCATTCACGTGGGGGCTGCAGCTCCGGAAATTCCGAAAGCTCTTATCGATCAGTTGAAGCCTGGTGGTAGAATGGTAATTCCTGTGGGTAACATTTTTCAGGATTTAAAGGTTGTGGACAAGAATTTGGACGGCTCTGTCACCGTTTACAGCGAGACTTCTGTTCGGTACGTTCCACTTACTAGCCGAGATGCACAGTTGAGAGGT 936 46.58 VSVTSTGTNVASAYGFRYCTPPLKHFLFFTSSSVLHIRRPFSLIASVHSVRPTSAPSSTETFFFSSPRVPISNFLTGNCPLLRMERFWSGSNISKNKAMVENLFNYGVLKSKKVAEVMESVDRALFVSGGNPPYIDSPMPIGYNATISAPHMHATCLQLLEQNLQPGMHALDVGSGTGYLTACFALMVGPEGRAVGVEHIPELVSSSILNIQKSAASLLLKEGSLVVHVGDGRQGWPEFAPYDAIHVGAAAPEIPKALIDQLKPGGRMVIPVGNIFQDLKVVDKNLDGSVTVYSETSVRYVPLTSRDAQLRG 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5238320 5240781 - BLOR05437 Blo13g00156 68551

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00156 312 PANTHER PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE 66 312 IPR000682 GO:0004719|GO:0036211
Blo13g00156 312 ProSitePatterns Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 230 245 IPR000682 GO:0004719|GO:0036211
Blo13g00156 312 PANTHER PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE 66 312 - -
Blo13g00156 312 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 96 283 IPR029063 -
Blo13g00156 312 Pfam Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 95 307 - -
Blo13g00156 312 Gene3D Vaccinia Virus protein VP39 88 312 IPR029063 -
Blo13g00156 312 CDD AdoMet_MTases 171 272 - -
Blo13g00156 312 TIGRFAM pimt: protein-L-isoaspartate O-methyltransferase 94 309 IPR000682 GO:0004719|GO:0036211
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00156 K00573 E2.1.1.77, pcm; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] - mnt:21401903 439.113
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo13g00156 Blo15g00243 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00243 Blo-Chr15:2543254 Blo13g00156 Blo-Chr13:5238320 2.27E-49 transposed
Blo13g00156 Blo-Chr13:5238320 Blo15g00242 Blo-Chr15:2531290 5.17E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g867 . . Bda06g00625 Bda15g00531 Bpe12g00677 . . . . . Cma10g00082 Cma11g00061 Car10g00074 Car11g00055 Sed08g0070 . Cpe04g01591 Bhi02g00585 Tan09g2322 Cmetu02g0735 . . . . Cla06g01710 Cam06g1899 Cec06g1948 Cco06g1952 Clacu06g1855 Cmu06g1796 Cre06g2611 Cone2ag0941 Cone16ag0061 . . . . . . Blo13g00156 Blo15g00243 . . . . . Bma08g00074 . Cmo10g00084 Cmo11g00063 . . . . . . . . . . . . . . . . . . . . Lsi06g01604 Csa01g00093 Chy02g02628 Cme02g02027
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003446 2 3 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 4 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00156 Blo_Chr01 FPKM 128.012512 121.535843 162.510544 153.221481 139.121735 154.541153 154.119781 130.468262 141.032593 144.070419
Blo13g00156 Blo_Chr13 FPKM 165.188065 163.192001 173.632156 167.083481 163.733231 186.243195 178.406326 184.968246 199.505127 202.137024