Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00165 ATGGCGGGAAAGCAAGCCGTAGGCGAATTGCTGCCGGCTAATCTTGCTGGTATGTCCAAGAACCAGCTCTATGACATCGTGTCGCAGATGAAAATGCTGATTGAACAGAACCAGCAGCAGGCGAGACAGATCCTCATCCAGAACCCTATGCTAACCAAAGCTCTTTTTCAGGCACAGATTATGCTTGGAATGGTGCAGCCTCCTAAACAGATACCAAACATTCAGGCTCCTACACCTCAGAATCCTCAGCAATCAGTATTGATGAACCAACAGTCAAATACACAGAGTACACGCATACCACCAGTCCCAATTGCTGTGCAGGACCAAACCAGTTCATCTAAACTCCTCACTTCAGAACGAAAGCAACAACAGAACCAACAGGCGTCACCCATTTCATCTAGTGCTGTTCCTTCCGTGAGTGCTCAGGCTCAACCTGCCAGTAGCGTTCAGTCTCAACCTCCTTTGGTTCCTCTGCAGGCATCACAACAGTCAAAGGTTTATCAGATTCCTCAAACGAACAATGTGTCGCTTCCGCAATCCTCTCAACCTCCAACCATGGCTCCAATTCCTATGCATTCTTCTGCTCCTCTACATCAAACCCAGATACCCAATGCTTCCATTCAGTTGCAACAGTCTTTACACTCAAGTGGAAATCCTCATATGTCACTGCAACCACCAATGCTACCACAATCTAGACCACATTCAGCACCTAATTTCCATCATCATTATCCTCCAGGGCCTCCACAAATGGGTTACCAATCTGCCAGTGCTCCCCAGCATGTTTCACAGCCCATGTTTCATTCGGTGGTTAAACCTCCTGCTGGTGTTGGACCTTCATTTCCCCAGGGACAGCCATCACTTTCTAGTCAACCACCACCTCAATCACTATATCAGGCAGGAGGTCAACAATTAGGTTCAGAGTTCAACAATCAAATTGGAAATCCTGTCCAAGGAGATGGAAGACAATCTTGGAGGTCTGGTATGCATGAGATGACGACTATGGCGCAGGTTTCAGGGCCACCACCAGTAGCTCCTACACAAATGGGTTCTAACAATCAGCCGTCTCACCCCGCACCTTTAACCCCGGAAATGGAGAAGGCTTTACTTCAACAAGTGATGAGCCTCACACCCGATCAAATTAATCTTCTCCCTCCAGAGCAGAGGAATCAAGTTTTTCAGCTGCAGCAAATGCTACGCCAATAA 1203 47.55 MAGKQAVGELLPANLAGMSKNQLYDIVSQMKMLIEQNQQQARQILIQNPMLTKALFQAQIMLGMVQPPKQIPNIQAPTPQNPQQSVLMNQQSNTQSTRIPPVPIAVQDQTSSSKLLTSERKQQQNQQASPISSSAVPSVSAQAQPASSVQSQPPLVPLQASQQSKVYQIPQTNNVSLPQSSQPPTMAPIPMHSSAPLHQTQIPNASIQLQQSLHSSGNPHMSLQPPMLPQSRPHSAPNFHHHYPPGPPQMGYQSASAPQHVSQPMFHSVVKPPAGVGPSFPQGQPSLSSQPPPQSLYQAGGQQLGSEFNNQIGNPVQGDGRQSWRSGMHEMTTMAQVSGPPPVAPTQMGSNNQPSHPAPLTPEMEKALLQQVMSLTPDQINLLPPEQRNQVFQLQQMLRQ 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5851079 5854099 + BLOR05446 Blo13g00165 68560

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00165 400 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 1 400 - -
Blo13g00165 400 MobiDBLite consensus disorder prediction 174 196 - -
Blo13g00165 400 MobiDBLite consensus disorder prediction 334 358 - -
Blo13g00165 400 MobiDBLite consensus disorder prediction 210 229 - -
Blo13g00165 400 MobiDBLite consensus disorder prediction 210 300 - -
Blo13g00165 400 Pfam Transcription termination and cleavage factor C-terminal 366 400 IPR026896 GO:0031124
Blo13g00165 400 Pfam Hinge domain of cleavage stimulation factor subunit 2 13 67 IPR025742 -
Blo13g00165 400 Gene3D - 359 400 IPR038192 -
Blo13g00165 400 MobiDBLite consensus disorder prediction 76 154 - -
Blo13g00165 400 MobiDBLite consensus disorder prediction 334 360 - -
Blo13g00165 400 MobiDBLite consensus disorder prediction 71 154 - -
Blo13g00165 400 MobiDBLite consensus disorder prediction 281 300 - -
Blo13g00165 400 MobiDBLite consensus disorder prediction 305 324 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00165 - - - mdm:103455502 416.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00165 Blo-Chr13:5851079 Blo18g00157 Blo-Chr18:1473519 5.54E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g319 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo13g00165 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005289 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g00165 Blo_Chr13 FPKM 11.15847 10.718034 5.733539 7.820089 9.057779 9.87953 8.740749 71.938438 76.735588 74.707527